| ASAP3 | Q8TDY4 | AL359851.1-201 | ENST00000569460 | 4997 nt | BASIC | 2.03 | □□□□□ -2.08 | | |
| ASAP3 | Q8TDY4 | C9orf84-205 | ENST00000394779 | 5060 nt | APPRIS ALT2 TSL 2 BASIC | 2.02 | □□□□□ -2.09 | | |
| ASAP3 | Q8TDY4 | Y_RNA.119-201 | ENST00000363301 | 96 nt | BASIC | 2.02 | □□□□□ -2.09 | | |
| ASAP3 | Q8TDY4 | SNORD115-27-201 | ENST00000364430 | 82 nt | BASIC | 2.02 | □□□□□ -2.09 | | |
| ASAP3 | Q8TDY4 | AC079140.2-201 | ENST00000506193 | 142 nt | BASIC | 2.02 | □□□□□ -2.09 | | |
| ASAP3 | Q8TDY4 | RNU6-165P-201 | ENST00000517170 | 99 nt | BASIC | 2.02 | □□□□□ -2.09 | | |
| ASAP3 | Q8TDY4 | MIR4500-201 | ENST00000579472 | 76 nt | BASIC | 2.02 | □□□□□ -2.09 | | |
| ASAP3 | Q8TDY4 | DYNC2H1-203 | ENST00000398093 | 12945 nt | APPRIS P3 TSL 5 BASIC | 2.02 | □□□□□ -2.09 | | |
| ASAP3 | Q8TDY4 | SNORD33-201 | ENST00000362761 | 85 nt | BASIC | 2.01 | □□□□□ -2.09 | | |
| ASAP3 | Q8TDY4 | RNU6-571P-201 | ENST00000384128 | 107 nt | BASIC | 2.01 | □□□□□ -2.09 | | |
| ASAP3 | Q8TDY4 | RNA5SP489-201 | ENST00000410986 | 109 nt | BASIC | 2.01 | □□□□□ -2.09 | | |
| ASAP3 | Q8TDY4 | RNU6-850P-201 | ENST00000516934 | 103 nt | BASIC | 2.01 | □□□□□ -2.09 | | |
| ASAP3 | Q8TDY4 | SNORA44.1-201 | ENST00000517031 | 108 nt | BASIC | 2.01 | □□□□□ -2.09 | | |
| ASAP3 | Q8TDY4 | AC019176.1-201 | ENST00000518519 | 225 nt | BASIC | 2.01 | □□□□□ -2.09 | | |
| ASAP3 | Q8TDY4 | AC015712.3-201 | ENST00000559380 | 164 nt | BASIC | 2.01 | □□□□□ -2.09 | | |
| ASAP3 | Q8TDY4 | MIR3664-201 | ENST00000579074 | 99 nt | BASIC | 2.01 | □□□□□ -2.09 | | |
| ASAP3 | Q8TDY4 | RNA5SP95-201 | ENST00000410319 | 137 nt | BASIC | 2 | □□□□□ -2.09 | | |
| ASAP3 | Q8TDY4 | RNA5SP233-201 | ENST00000459153 | 113 nt | BASIC | 2 | □□□□□ -2.09 | | |
| ASAP3 | Q8TDY4 | MIR4524B-201 | ENST00000581569 | 115 nt | BASIC | 2 | □□□□□ -2.09 | | |
| ASAP3 | Q8TDY4 | AL627230.6-201 | ENST00000611129 | 280 nt | BASIC | 2 | □□□□□ -2.09 | | |
| ASAP3 | Q8TDY4 | MIR8066-201 | ENST00000617280 | 78 nt | BASIC | 2 | □□□□□ -2.09 | | |
| ASAP3 | Q8TDY4 | AC084768.2-201 | ENST00000622736 | 221 nt | BASIC | 2 | □□□□□ -2.09 | | |
| ASAP3 | Q8TDY4 | SYT14-201 | ENST00000367015 | 5094 nt | APPRIS ALT2 TSL 1 (best) BASIC | 2 | □□□□□ -2.09 | | |
| ASAP3 | Q8TDY4 | Y_RNA.313-201 | ENST00000365095 | 103 nt | BASIC | 1.99 | □□□□□ -2.09 | | |
| ASAP3 | Q8TDY4 | Y_RNA.437-201 | ENST00000384113 | 113 nt | BASIC | 1.99 | □□□□□ -2.09 | | |
| ASAP3 | Q8TDY4 | RNU6ATAC3P-201 | ENST00000387974 | 126 nt | BASIC | 1.99 | □□□□□ -2.09 | | |
| ASAP3 | Q8TDY4 | RNU6-279P-201 | ENST00000391297 | 101 nt | BASIC | 1.99 | □□□□□ -2.09 | | |
| ASAP3 | Q8TDY4 | AC087499.7-201 | ENST00000441958 | 109 nt | BASIC | 1.99 | □□□□□ -2.09 | | |
| ASAP3 | Q8TDY4 | ZNRD1-AS1_1.6-201 | ENST00000610339 | 68 nt | BASIC | 1.99 | □□□□□ -2.09 | | |
| ASAP3 | Q8TDY4 | MIR8081-201 | ENST00000611533 | 95 nt | BASIC | 1.99 | □□□□□ -2.09 | | |
| ASAP3 | Q8TDY4 | CYP19A1-220 | ENST00000613097 | 123 nt | TSL 5 BASIC | 1.99 | □□□□□ -2.09 | | |
| ASAP3 | Q8TDY4 | KIAA1107-201 | ENST00000370378 | 4622 nt | TSL 5 BASIC | 1.98 | □□□□□ -2.09 | | |
| ASAP3 | Q8TDY4 | FSIP2-202 | ENST00000424728 | 20788 nt | APPRIS P2 TSL 5 BASIC | 1.98 | □□□□□ -2.09 | | |
| ASAP3 | Q8TDY4 | Y_RNA.57-201 | ENST00000362806 | 113 nt | BASIC | 1.98 | □□□□□ -2.09 | | |
| ASAP3 | Q8TDY4 | SNORA16.1-201 | ENST00000364597 | 132 nt | BASIC | 1.98 | □□□□□ -2.09 | | |
| ASAP3 | Q8TDY4 | Y_RNA.607-201 | ENST00000410597 | 98 nt | BASIC | 1.98 | □□□□□ -2.09 | | |
| ASAP3 | Q8TDY4 | BX276092.1-201 | ENST00000427368 | 251 nt | BASIC | 1.98 | □□□□□ -2.09 | | |
| ASAP3 | Q8TDY4 | MIR18B-201 | ENST00000454574 | 71 nt | BASIC | 1.98 | □□□□□ -2.09 | | |
| ASAP3 | Q8TDY4 | AC108210.2-201 | ENST00000503681 | 201 nt | BASIC | 1.98 | □□□□□ -2.09 | | |
| ASAP3 | Q8TDY4 | AC036222.2-201 | ENST00000579033 | 333 nt | TSL 3 BASIC | 1.98 | □□□□□ -2.09 | | |
| ASAP3 | Q8TDY4 | AP001109.1-201 | ENST00000587114 | 279 nt | TSL 3 BASIC | 1.98 | □□□□□ -2.09 | | |
| ASAP3 | Q8TDY4 | HFM1-201 | ENST00000370425 | 4931 nt | APPRIS P1 TSL 1 (best) BASIC | 1.98 | □□□□□ -2.09 | | |
| ASAP3 | Q8TDY4 | AC131280.1-202 | ENST00000624067 | 4211 nt | BASIC | 1.98 | □□□□□ -2.09 | | |
| ASAP3 | Q8TDY4 | PI15-201 | ENST00000260113 | 6732 nt | APPRIS P1 TSL 1 (best) BASIC | 1.98 | □□□□□ -2.09 | | |
| ASAP3 | Q8TDY4 | RNA5SP99-201 | ENST00000364020 | 114 nt | BASIC | 1.97 | □□□□□ -2.09 | | |
| ASAP3 | Q8TDY4 | RNU6-1065P-201 | ENST00000384513 | 106 nt | BASIC | 1.97 | □□□□□ -2.09 | | |
| ASAP3 | Q8TDY4 | Y_RNA.588-201 | ENST00000391254 | 102 nt | BASIC | 1.97 | □□□□□ -2.09 | | |
| ASAP3 | Q8TDY4 | 5S_rRNA.2-201 | ENST00000391293 | 112 nt | BASIC | 1.97 | □□□□□ -2.09 | | |
| ASAP3 | Q8TDY4 | AC024382.1-201 | ENST00000520224 | 292 nt | TSL 3 BASIC | 1.97 | □□□□□ -2.09 | | |
| ASAP3 | Q8TDY4 | AL512310.8-201 | ENST00000550183 | 120 nt | BASIC | 1.97 | □□□□□ -2.09 | | |
| ASAP3 | Q8TDY4 | HMGN2P19-201 | ENST00000425149 | 265 nt | BASIC | 1.96 | □□□□□ -2.1 | | |
| ASAP3 | Q8TDY4 | RNU6-548P-201 | ENST00000517083 | 115 nt | BASIC | 1.96 | □□□□□ -2.1 | | |
| ASAP3 | Q8TDY4 | MIR3937-201 | ENST00000580135 | 106 nt | BASIC | 1.96 | □□□□□ -2.1 | | |
| ASAP3 | Q8TDY4 | MIR4491-201 | ENST00000581087 | 68 nt | BASIC | 1.96 | □□□□□ -2.1 | | |
| ASAP3 | Q8TDY4 | RNA5SP432-201 | ENST00000362480 | 116 nt | BASIC | 1.95 | □□□□□ -2.1 | | |
| ASAP3 | Q8TDY4 | RNU6-524P-201 | ENST00000384270 | 107 nt | BASIC | 1.95 | □□□□□ -2.1 | | |
| ASAP3 | Q8TDY4 | MIR519C-201 | ENST00000385053 | 87 nt | BASIC | 1.95 | □□□□□ -2.1 | | |
| ASAP3 | Q8TDY4 | RNU6-519P-201 | ENST00000410590 | 108 nt | BASIC | 1.95 | □□□□□ -2.1 | | |
| ASAP3 | Q8TDY4 | RNU6-1054P-201 | ENST00000411293 | 104 nt | BASIC | 1.95 | □□□□□ -2.1 | | |
| ASAP3 | Q8TDY4 | SNORD4B-201 | ENST00000459083 | 72 nt | BASIC | 1.95 | □□□□□ -2.1 | | |
| ASAP3 | Q8TDY4 | MIR3198-2-201 | ENST00000577868 | 80 nt | BASIC | 1.95 | □□□□□ -2.1 | | |
| ASAP3 | Q8TDY4 | MIR4769-201 | ENST00000584126 | 77 nt | BASIC | 1.95 | □□□□□ -2.1 | | |
| ASAP3 | Q8TDY4 | AL096840.1-201 | ENST00000603287 | 93 nt | BASIC | 1.95 | □□□□□ -2.1 | | |
| ASAP3 | Q8TDY4 | MIR4419B-201 | ENST00000577260 | 68 nt | BASIC | 1.94 | □□□□□ -2.1 | | |
| ASAP3 | Q8TDY4 | AL512598.1-201 | ENST00000610158 | 273 nt | BASIC | 1.94 | □□□□□ -2.1 | | |
| ASAP3 | Q8TDY4 | RNU1-36P-201 | ENST00000365130 | 165 nt | BASIC | 1.93 | □□□□□ -2.1 | | |
| ASAP3 | Q8TDY4 | TRAJ61-201 | ENST00000390479 | 60 nt | APPRIS P1 BASIC | 1.93 | □□□□□ -2.1 | | |
| ASAP3 | Q8TDY4 | TRAJ47-201 | ENST00000390490 | 57 nt | APPRIS P1 BASIC | 1.93 | □□□□□ -2.1 | | |
| ASAP3 | Q8TDY4 | TRAJ11-201 | ENST00000390526 | 60 nt | APPRIS P1 BASIC | 1.93 | □□□□□ -2.1 | | |
| ASAP3 | Q8TDY4 | RNU6-857P-201 | ENST00000515893 | 110 nt | BASIC | 1.93 | □□□□□ -2.1 | | |
| ASAP3 | Q8TDY4 | HS1BP3-208 | ENST00000631166 | 78 nt | TSL 5 BASIC | 1.93 | □□□□□ -2.1 | | |
| ASAP3 | Q8TDY4 | RNU1-17P-201 | ENST00000363022 | 152 nt | BASIC | 1.92 | □□□□□ -2.1 | | |
| ASAP3 | Q8TDY4 | RPS27P16-201 | ENST00000425758 | 201 nt | BASIC | 1.92 | □□□□□ -2.1 | | |
| ASAP3 | Q8TDY4 | RNU7-85P-201 | ENST00000458851 | 63 nt | BASIC | 1.92 | □□□□□ -2.1 | | |
| ASAP3 | Q8TDY4 | Y_RNA.648-201 | ENST00000459455 | 110 nt | BASIC | 1.92 | □□□□□ -2.1 | | |
| ASAP3 | Q8TDY4 | AC093729.1-201 | ENST00000513074 | 128 nt | BASIC | 1.92 | □□□□□ -2.1 | | |
| ASAP3 | Q8TDY4 | RNU6-531P-201 | ENST00000516694 | 104 nt | BASIC | 1.92 | □□□□□ -2.1 | | |
| ASAP3 | Q8TDY4 | SNORA25.16-201 | ENST00000516741 | 121 nt | BASIC | 1.92 | □□□□□ -2.1 | | |
| ASAP3 | Q8TDY4 | MIR3122-201 | ENST00000577243 | 73 nt | BASIC | 1.92 | □□□□□ -2.1 | | |
| ASAP3 | Q8TDY4 | UBE3A-225 | ENST00000636667 | 5726 nt | TSL 5 BASIC | 1.92 | □□□□□ -2.1 | | |
| ASAP3 | Q8TDY4 | MBNL3-212 | ENST00000538204 | 11294 nt | TSL 1 (best) BASIC | 1.91 | □□□□□ -2.1 | | |
| ASAP3 | Q8TDY4 | SNORD36A-201 | ENST00000362874 | 73 nt | BASIC | 1.91 | □□□□□ -2.1 | | |
| ASAP3 | Q8TDY4 | RNU4-58P-201 | ENST00000363192 | 141 nt | BASIC | 1.91 | □□□□□ -2.1 | | |
| ASAP3 | Q8TDY4 | Y_RNA.316-201 | ENST00000365118 | 111 nt | BASIC | 1.91 | □□□□□ -2.1 | | |
| ASAP3 | Q8TDY4 | RNU6-652P-201 | ENST00000365488 | 107 nt | BASIC | 1.91 | □□□□□ -2.1 | | |
| ASAP3 | Q8TDY4 | SNORD93-201 | ENST00000408813 | 74 nt | BASIC | 1.91 | □□□□□ -2.1 | | |
| ASAP3 | Q8TDY4 | snoU13.21-201 | ENST00000459368 | 105 nt | BASIC | 1.91 | □□□□□ -2.1 | | |
| ASAP3 | Q8TDY4 | AC007450.1-201 | ENST00000536492 | 188 nt | TSL 3 BASIC | 1.91 | □□□□□ -2.1 | | |
| ASAP3 | Q8TDY4 | 5S_rRNA.15-201 | ENST00000611169 | 127 nt | BASIC | 1.91 | □□□□□ -2.1 | | |
| ASAP3 | Q8TDY4 | RNU1-78P-201 | ENST00000391248 | 165 nt | BASIC | 1.9 | □□□□□ -2.11 | | |
| ASAP3 | Q8TDY4 | AL353795.2-201 | ENST00000431804 | 425 nt | TSL 2 BASIC | 1.9 | □□□□□ -2.11 | | |
| ASAP3 | Q8TDY4 | AC048334.1-201 | ENST00000477975 | 159 nt | BASIC | 1.9 | □□□□□ -2.11 | | |
| ASAP3 | Q8TDY4 | SNORA25.15-201 | ENST00000516487 | 89 nt | BASIC | 1.9 | □□□□□ -2.11 | | |
| ASAP3 | Q8TDY4 | AC007991.3-201 | ENST00000517623 | 502 nt | TSL 4 BASIC | 1.9 | □□□□□ -2.11 | | |
| ASAP3 | Q8TDY4 | AL078612.1-201 | ENST00000533009 | 150 nt | TSL 5 BASIC | 1.9 | □□□□□ -2.11 | | |
| ASAP3 | Q8TDY4 | ZNF654-201 | ENST00000309495 | 4957 nt | APPRIS P2 TSL 1 (best) BASIC | 1.9 | □□□□□ -2.11 | | |
| ASAP3 | Q8TDY4 | CALCRL-201 | ENST00000392370 | 5155 nt | APPRIS P1 TSL 1 (best) BASIC | 1.89 | □□□□□ -2.11 | | |
| ASAP3 | Q8TDY4 | Y_RNA.244-201 | ENST00000364484 | 109 nt | BASIC | 1.89 | □□□□□ -2.11 | | |
| ASAP3 | Q8TDY4 | RNA5SP190-201 | ENST00000365222 | 118 nt | BASIC | 1.89 | □□□□□ -2.11 | | |
| ASAP3 | Q8TDY4 | RNU6-53P-201 | ENST00000365367 | 106 nt | BASIC | 1.89 | □□□□□ -2.11 | | |