Protein–RNA interactions for Protein: Q68DE3

USF3, Basic helix-loop-helix domain-containing protein USF3, humanhuman

Predictions only

Length 2,245 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF3Q68DE3 AL356475.1-201ENST00000440321 341 ntTSL 5 BASIC-1.55□□□□□ -2.66
USF3Q68DE3 MIR3129-201ENST00000581095 76 ntBASIC-1.55□□□□□ -2.66
USF3Q68DE3 AC007485.1-201ENST00000616755 206 ntBASIC-1.55□□□□□ -2.66
USF3Q68DE3 TPTEP1-208ENST00000636884 213 ntBASIC-1.55□□□□□ -2.66
USF3Q68DE3 RNU6-957P-201ENST00000363652 99 ntBASIC-1.55□□□□□ -2.66
USF3Q68DE3 RNU4-10P-201ENST00000364383 140 ntBASIC-1.55□□□□□ -2.66
USF3Q68DE3 Y_RNA.400-201ENST00000383963 111 ntBASIC-1.55□□□□□ -2.66
USF3Q68DE3 Y_RNA.560-201ENST00000384689 102 ntBASIC-1.55□□□□□ -2.66
USF3Q68DE3 RNU6-763P-201ENST00000390865 106 ntBASIC-1.55□□□□□ -2.66
USF3Q68DE3 AL035461.1-201ENST00000421490 332 ntBASIC-1.55□□□□□ -2.66
USF3Q68DE3 Y_RNA.691-201ENST00000516611 103 ntBASIC-1.55□□□□□ -2.66
USF3Q68DE3 AC060788.1-201ENST00000521318 469 ntBASIC-1.55□□□□□ -2.66
USF3Q68DE3 RNU6-1214P-201ENST00000363650 109 ntBASIC-1.56□□□□□ -2.66
USF3Q68DE3 AF228730.3-201ENST00000436691 102 ntBASIC-1.56□□□□□ -2.66
USF3Q68DE3 AC069023.1-201ENST00000442231 221 ntTSL 3 BASIC-1.56□□□□□ -2.66
USF3Q68DE3 RNU6-850P-201ENST00000516934 103 ntBASIC-1.56□□□□□ -2.66
USF3Q68DE3 AC021443.1-201ENST00000604478 211 ntBASIC-1.56□□□□□ -2.66
USF3Q68DE3 ZNRD1-AS1_1.6-201ENST00000610339 68 ntBASIC-1.56□□□□□ -2.66
USF3Q68DE3 RNU6-1290P-201ENST00000362957 109 ntBASIC-1.56□□□□□ -2.66
USF3Q68DE3 Y_RNA.162-201ENST00000363683 102 ntBASIC-1.56□□□□□ -2.66
USF3Q68DE3 RNU6-1090P-201ENST00000364065 94 ntBASIC-1.56□□□□□ -2.66
USF3Q68DE3 SNORD116-11-201ENST00000383882 92 ntBASIC-1.56□□□□□ -2.66
USF3Q68DE3 MT-TH-201ENST00000387441 69 ntBASIC-1.56□□□□□ -2.66
USF3Q68DE3 RNU6-1248P-201ENST00000391096 64 ntBASIC-1.56□□□□□ -2.66
USF3Q68DE3 FGF7P6-202ENST00000451282 293 ntBASIC-1.56□□□□□ -2.66
USF3Q68DE3 AC097639.2-201ENST00000603159 172 ntBASIC-1.56□□□□□ -2.66
USF3Q68DE3 AC009779.6-201ENST00000603972 165 ntBASIC-1.56□□□□□ -2.66
USF3Q68DE3 MIR6888-201ENST00000621977 67 ntBASIC-1.56□□□□□ -2.66
USF3Q68DE3 MIR6863-201ENST00000636112 90 ntBASIC-1.56□□□□□ -2.66
USF3Q68DE3 MIR3662-201ENST00000637030 95 ntBASIC-1.56□□□□□ -2.66
USF3Q68DE3 Y_RNA.448-201ENST00000384185 108 ntBASIC-1.57□□□□□ -2.66
USF3Q68DE3 AC040904.1-201ENST00000590850 223 ntBASIC-1.57□□□□□ -2.66
USF3Q68DE3 RNU6-924P-201ENST00000362926 108 ntBASIC-1.58□□□□□ -2.66
USF3Q68DE3 Y_RNA.296-201ENST00000364930 108 ntBASIC-1.58□□□□□ -2.66
USF3Q68DE3 RNU6-472P-201ENST00000384299 107 ntBASIC-1.58□□□□□ -2.66
USF3Q68DE3 RNU6-1050P-201ENST00000410388 107 ntBASIC-1.58□□□□□ -2.66
USF3Q68DE3 RNU6-248P-201ENST00000410720 107 ntBASIC-1.58□□□□□ -2.66
USF3Q68DE3 PMCHL1-202ENST00000423102 261 ntBASIC-1.58□□□□□ -2.66
USF3Q68DE3 RNU6-168P-201ENST00000516189 101 ntBASIC-1.58□□□□□ -2.66
USF3Q68DE3 AC027544.2-201ENST00000539313 630 ntTSL 5 BASIC-1.58□□□□□ -2.66
USF3Q68DE3 MTND3P12-201ENST00000559068 328 ntBASIC-1.58□□□□□ -2.66
USF3Q68DE3 MIR548AE2-201ENST00000583456 67 ntBASIC-1.58□□□□□ -2.66
USF3Q68DE3 MIR548AM-201ENST00000584298 74 ntBASIC-1.58□□□□□ -2.66
USF3Q68DE3 AC084782.3-201ENST00000612282 578 ntBASIC-1.58□□□□□ -2.66
USF3Q68DE3 Y_RNA.10-201ENST00000362371 110 ntBASIC-1.58□□□□□ -2.66
USF3Q68DE3 SNORA32-201ENST00000384072 121 ntBASIC-1.58□□□□□ -2.66
USF3Q68DE3 SNORD38.2-201ENST00000384470 69 ntBASIC-1.58□□□□□ -2.66
USF3Q68DE3 RNY3P10-201ENST00000384764 102 ntBASIC-1.58□□□□□ -2.66
USF3Q68DE3 MT-TM-201ENST00000387377 68 ntBASIC-1.58□□□□□ -2.66
USF3Q68DE3 RNU7-106P-201ENST00000459514 67 ntBASIC-1.58□□□□□ -2.66
USF3Q68DE3 SEPT14P4-201ENST00000513445 186 ntBASIC-1.58□□□□□ -2.66
USF3Q68DE3 MTCO2P24-201ENST00000515611 426 ntBASIC-1.58□□□□□ -2.66
USF3Q68DE3 RNU6-1016P-201ENST00000516689 94 ntBASIC-1.58□□□□□ -2.66
USF3Q68DE3 CR383656.11-201ENST00000552261 498 ntTSL 3 BASIC-1.58□□□□□ -2.66
USF3Q68DE3 MIR3123-201ENST00000583417 75 ntBASIC-1.58□□□□□ -2.66
USF3Q68DE3 MIR376B-201ENST00000614515 100 ntBASIC-1.58□□□□□ -2.66
USF3Q68DE3 RNU6-1094P-201ENST00000362416 104 ntBASIC-1.59□□□□□ -2.66
USF3Q68DE3 Y_RNA.53-201ENST00000362765 102 ntBASIC-1.59□□□□□ -2.66
USF3Q68DE3 Y_RNA.103-201ENST00000363171 102 ntBASIC-1.59□□□□□ -2.66
USF3Q68DE3 Y_RNA.373-201ENST00000365600 103 ntBASIC-1.59□□□□□ -2.66
USF3Q68DE3 RNU6-841P-201ENST00000383872 107 ntBASIC-1.59□□□□□ -2.66
USF3Q68DE3 Y_RNA.404-201ENST00000383978 102 ntBASIC-1.59□□□□□ -2.66
USF3Q68DE3 Y_RNA.530-201ENST00000384587 101 ntBASIC-1.59□□□□□ -2.66
USF3Q68DE3 RNU6-864P-201ENST00000516256 108 ntBASIC-1.59□□□□□ -2.66
USF3Q68DE3 MIR3915-201ENST00000578518 97 ntBASIC-1.59□□□□□ -2.66
USF3Q68DE3 MIR4659A-201ENST00000580269 81 ntBASIC-1.59□□□□□ -2.66
USF3Q68DE3 MIR466-201ENST00000580653 84 ntBASIC-1.59□□□□□ -2.66
USF3Q68DE3 MIR548O2-201ENST00000616090 70 ntBASIC-1.59□□□□□ -2.66
USF3Q68DE3 U6.92-201ENST00000636464 89 ntBASIC-1.59□□□□□ -2.66
USF3Q68DE3 RNU6-194P-201ENST00000363862 105 ntBASIC-1.59□□□□□ -2.66
USF3Q68DE3 Y_RNA.424-201ENST00000384063 103 ntBASIC-1.59□□□□□ -2.66
USF3Q68DE3 RNY1P6-201ENST00000384193 109 ntBASIC-1.59□□□□□ -2.66
USF3Q68DE3 RNU6ATAC41P-201ENST00000408600 126 ntBASIC-1.59□□□□□ -2.66
USF3Q68DE3 RNU6-935P-201ENST00000410371 100 ntBASIC-1.59□□□□□ -2.66
USF3Q68DE3 AC090616.4-201ENST00000448026 115 ntBASIC-1.59□□□□□ -2.66
USF3Q68DE3 AC013248.1-201ENST00000455092 232 ntTSL 3 BASIC-1.59□□□□□ -2.66
USF3Q68DE3 RNU7-125P-201ENST00000458760 62 ntBASIC-1.59□□□□□ -2.66
USF3Q68DE3 MIR5688-201ENST00000580619 83 ntBASIC-1.59□□□□□ -2.66
USF3Q68DE3 SNORA63.6-201ENST00000364921 119 ntBASIC-1.6□□□□□ -2.67
USF3Q68DE3 Y_RNA.396-201ENST00000383949 103 ntBASIC-1.6□□□□□ -2.67
USF3Q68DE3 AC005899.2-201ENST00000584353 90 ntBASIC-1.6□□□□□ -2.67
USF3Q68DE3 AP000720.1-201ENST00000625091 483 ntBASIC-1.6□□□□□ -2.67
USF3Q68DE3 Y_RNA.71-201ENST00000362892 104 ntBASIC-1.6□□□□□ -2.67
USF3Q68DE3 SNORD101-201ENST00000384027 73 ntBASIC-1.6□□□□□ -2.67
USF3Q68DE3 Y_RNA.525-201ENST00000384570 113 ntBASIC-1.6□□□□□ -2.67
USF3Q68DE3 MIR513B-201ENST00000385136 84 ntBASIC-1.6□□□□□ -2.67
USF3Q68DE3 AC019235.1-201ENST00000503847 207 ntBASIC-1.6□□□□□ -2.67
USF3Q68DE3 AL162413.1-201ENST00000603198 110 ntBASIC-1.6□□□□□ -2.67
USF3Q68DE3 AC087741.2-201ENST00000619415 172 ntBASIC-1.6□□□□□ -2.67
USF3Q68DE3 RNU6-774P-201ENST00000363238 107 ntBASIC-1.61□□□□□ -2.67
USF3Q68DE3 RNU6-593P-201ENST00000364716 112 ntBASIC-1.61□□□□□ -2.67
USF3Q68DE3 RNU6-728P-201ENST00000365375 104 ntBASIC-1.61□□□□□ -2.67
USF3Q68DE3 AL161932.1-201ENST00000437408 146 ntBASIC-1.61□□□□□ -2.67
USF3Q68DE3 RNU6-1088P-201ENST00000516850 104 ntBASIC-1.61□□□□□ -2.67
USF3Q68DE3 AP001362.1-201ENST00000625165 124 ntBASIC-1.61□□□□□ -2.67
USF3Q68DE3 RNU4-24P-201ENST00000364565 139 ntBASIC-1.62□□□□□ -2.67
USF3Q68DE3 RNU6-80P-201ENST00000384195 107 ntBASIC-1.62□□□□□ -2.67
USF3Q68DE3 RNU6-306P-201ENST00000384617 107 ntBASIC-1.62□□□□□ -2.67
USF3Q68DE3 RNU6-21P-201ENST00000384710 107 ntBASIC-1.62□□□□□ -2.67
USF3Q68DE3 RNU6-273P-201ENST00000516937 96 ntBASIC-1.62□□□□□ -2.67
Retrieved 100 of 98,524 protein–RNA pairs in 106 ms