Protein–RNA interactions for Protein: Q53GD3

SLC44A4, Choline transporter-like protein 4, humanhuman

Predictions only

Length 710 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC44A4Q53GD3 RNA5SP95-201ENST00000410319 137 ntBASIC1.4□□□□□ -2.19
SLC44A4Q53GD3 Y_RNA.601-201ENST00000410500 113 ntBASIC1.4□□□□□ -2.19
SLC44A4Q53GD3 RPS29P23-201ENST00000458635 123 ntBASIC1.4□□□□□ -2.19
SLC44A4Q53GD3 AC024382.1-201ENST00000520224 292 ntTSL 3 BASIC1.4□□□□□ -2.19
SLC44A4Q53GD3 MIR6516-201ENST00000630554 81 ntBASIC1.4□□□□□ -2.19
SLC44A4Q53GD3 PPP1R3A-201ENST00000284601 4384 ntAPPRIS P1 TSL 1 (best) BASIC1.39□□□□□ -2.19
SLC44A4Q53GD3 Y_RNA.247-201ENST00000364500 92 ntBASIC1.39□□□□□ -2.19
SLC44A4Q53GD3 RNY1P13-201ENST00000365030 105 ntBASIC1.39□□□□□ -2.19
SLC44A4Q53GD3 Y_RNA.330-201ENST00000365230 109 ntBASIC1.39□□□□□ -2.19
SLC44A4Q53GD3 SNORD26-201ENST00000384147 75 ntBASIC1.39□□□□□ -2.19
SLC44A4Q53GD3 RNU6-1201P-201ENST00000384227 107 ntBASIC1.39□□□□□ -2.19
SLC44A4Q53GD3 Y_RNA.540-201ENST00000384638 111 ntBASIC1.39□□□□□ -2.19
SLC44A4Q53GD3 AC019288.1-201ENST00000557918 224 ntBASIC1.39□□□□□ -2.19
SLC44A4Q53GD3 PNRC2-204ENST00000579103 171 ntTSL 2 BASIC1.39□□□□□ -2.19
SLC44A4Q53GD3 AL442128.1-201ENST00000615151 90 ntBASIC1.39□□□□□ -2.19
SLC44A4Q53GD3 MALAT1.1-201ENST00000618249 95 ntBASIC1.39□□□□□ -2.19
SLC44A4Q53GD3 CEP290-201ENST00000309041 7616 ntAPPRIS ALT1 TSL 5 BASIC1.38□□□□□ -2.19
SLC44A4Q53GD3 FAM135A-203ENST00000370479 5930 ntTSL 1 (best) BASIC1.38□□□□□ -2.19
SLC44A4Q53GD3 MIR26B-201ENST00000362251 77 ntBASIC1.38□□□□□ -2.19
SLC44A4Q53GD3 Y_RNA.93-201ENST00000363066 109 ntBASIC1.38□□□□□ -2.19
SLC44A4Q53GD3 RNU6-396P-201ENST00000365369 105 ntBASIC1.38□□□□□ -2.19
SLC44A4Q53GD3 Y_RNA.448-201ENST00000384185 108 ntBASIC1.38□□□□□ -2.19
SLC44A4Q53GD3 MIR222-201ENST00000384992 110 ntBASIC1.38□□□□□ -2.19
SLC44A4Q53GD3 RNU6-205P-201ENST00000390858 107 ntBASIC1.38□□□□□ -2.19
SLC44A4Q53GD3 RNU6-1321P-201ENST00000390905 107 ntBASIC1.38□□□□□ -2.19
SLC44A4Q53GD3 SNORA26.2-201ENST00000390922 122 ntBASIC1.38□□□□□ -2.19
SLC44A4Q53GD3 RNA5SP237-201ENST00000410414 113 ntBASIC1.38□□□□□ -2.19
SLC44A4Q53GD3 RNU6ATAC17P-201ENST00000516074 71 ntBASIC1.38□□□□□ -2.19
SLC44A4Q53GD3 RNU6-1018P-201ENST00000516577 106 ntBASIC1.38□□□□□ -2.19
SLC44A4Q53GD3 RNU7-137P-201ENST00000516788 62 ntBASIC1.38□□□□□ -2.19
SLC44A4Q53GD3 SNORA70.22-201ENST00000517160 124 ntBASIC1.38□□□□□ -2.19
SLC44A4Q53GD3 AC141846.1-201ENST00000568348 142 ntBASIC1.38□□□□□ -2.19
SLC44A4Q53GD3 ABCA5-201ENST00000392676 8220 ntAPPRIS P1 TSL 1 (best) BASIC1.38□□□□□ -2.19
SLC44A4Q53GD3 RNU6-1313P-201ENST00000362622 102 ntBASIC1.37□□□□□ -2.19
SLC44A4Q53GD3 RNU6-170P-201ENST00000362832 104 ntBASIC1.37□□□□□ -2.19
SLC44A4Q53GD3 Y_RNA.290-201ENST00000364879 114 ntBASIC1.37□□□□□ -2.19
SLC44A4Q53GD3 MIR34C-201ENST00000384831 77 ntBASIC1.37□□□□□ -2.19
SLC44A4Q53GD3 MIR588-201ENST00000384900 83 ntBASIC1.37□□□□□ -2.19
SLC44A4Q53GD3 RNU6-644P-201ENST00000391155 98 ntBASIC1.37□□□□□ -2.19
SLC44A4Q53GD3 Y_RNA.593-201ENST00000410292 98 ntBASIC1.37□□□□□ -2.19
SLC44A4Q53GD3 snoU13.2-201ENST00000459201 104 ntBASIC1.37□□□□□ -2.19
SLC44A4Q53GD3 RNU7-61P-201ENST00000515897 61 ntBASIC1.37□□□□□ -2.19
SLC44A4Q53GD3 RNU4ATAC11P-201ENST00000515939 126 ntBASIC1.37□□□□□ -2.19
SLC44A4Q53GD3 Y_RNA.659-201ENST00000515994 113 ntBASIC1.37□□□□□ -2.19
SLC44A4Q53GD3 SNORD79.1-201ENST00000516069 84 ntBASIC1.37□□□□□ -2.19
SLC44A4Q53GD3 AL662814.1-201ENST00000617364 121 ntBASIC1.37□□□□□ -2.19
SLC44A4Q53GD3 MIR6740-201ENST00000618268 113 ntBASIC1.37□□□□□ -2.19
SLC44A4Q53GD3 NFIA-AS1-206ENST00000630199 220 ntTSL 5 BASIC1.37□□□□□ -2.19
SLC44A4Q53GD3 MIR1245B-201ENST00000636115 69 ntBASIC1.37□□□□□ -2.19
SLC44A4Q53GD3 Y_RNA.10-201ENST00000362371 110 ntBASIC1.36□□□□□ -2.19
SLC44A4Q53GD3 RNU1-93P-201ENST00000364704 169 ntBASIC1.36□□□□□ -2.19
SLC44A4Q53GD3 RNU6-1275P-201ENST00000391087 107 ntBASIC1.36□□□□□ -2.19
SLC44A4Q53GD3 RNU6ATAC42P-201ENST00000408637 95 ntBASIC1.36□□□□□ -2.19
SLC44A4Q53GD3 RNU6-162P-201ENST00000516228 103 ntBASIC1.36□□□□□ -2.19
SLC44A4Q53GD3 MIR4777-201ENST00000583710 86 ntBASIC1.36□□□□□ -2.19
SLC44A4Q53GD3 FAM13A-AS1_1.1-201ENST00000612555 119 ntBASIC1.36□□□□□ -2.19
SLC44A4Q53GD3 uc_338.6-201ENST00000613544 171 ntBASIC1.36□□□□□ -2.19
SLC44A4Q53GD3 MIR376B-201ENST00000614515 100 ntBASIC1.36□□□□□ -2.19
SLC44A4Q53GD3 UBE3A-225ENST00000636667 5726 ntTSL 5 BASIC1.36□□□□□ -2.19
SLC44A4Q53GD3 EYS-205ENST00000393380 5450 ntTSL 1 (best) BASIC1.36□□□□□ -2.19
SLC44A4Q53GD3 SNORD114-10-201ENST00000363409 72 ntBASIC1.35□□□□□ -2.19
SLC44A4Q53GD3 Y_RNA.467-201ENST00000384297 102 ntBASIC1.35□□□□□ -2.19
SLC44A4Q53GD3 SNORA25-201ENST00000384384 134 ntBASIC1.35□□□□□ -2.19
SLC44A4Q53GD3 Y_RNA.558-201ENST00000384685 113 ntBASIC1.35□□□□□ -2.19
SLC44A4Q53GD3 SNORA40.6-201ENST00000391153 128 ntBASIC1.35□□□□□ -2.19
SLC44A4Q53GD3 MRPL35P3-201ENST00000421557 364 ntBASIC1.35□□□□□ -2.19
SLC44A4Q53GD3 RNU6-158P-201ENST00000517104 100 ntBASIC1.35□□□□□ -2.19
SLC44A4Q53GD3 MIR3660-201ENST00000584845 100 ntBASIC1.35□□□□□ -2.19
SLC44A4Q53GD3 AC022709.1-201ENST00000615967 87 ntBASIC1.35□□□□□ -2.19
SLC44A4Q53GD3 SEPT14P17-201ENST00000617978 177 ntBASIC1.35□□□□□ -2.19
SLC44A4Q53GD3 MIR2052-201ENST00000636055 55 ntBASIC1.35□□□□□ -2.19
SLC44A4Q53GD3 ANGPTL3-201ENST00000371129 2805 ntAPPRIS P1 TSL 1 (best) BASIC1.34□□□□□ -2.19
SLC44A4Q53GD3 AC008163.1-202ENST00000636004 2889 ntBASIC1.34□□□□□ -2.19
SLC44A4Q53GD3 MIR494-201ENST00000349529 81 ntBASIC1.34□□□□□ -2.19
SLC44A4Q53GD3 Y_RNA.377-201ENST00000365644 108 ntBASIC1.34□□□□□ -2.19
SLC44A4Q53GD3 MIR520E-201ENST00000384867 87 ntBASIC1.34□□□□□ -2.19
SLC44A4Q53GD3 AL591704.2-201ENST00000421658 181 ntBASIC1.34□□□□□ -2.19
SLC44A4Q53GD3 AC109327.2-201ENST00000448339 378 ntBASIC1.34□□□□□ -2.19
SLC44A4Q53GD3 RNU7-21P-201ENST00000459430 62 ntBASIC1.34□□□□□ -2.19
SLC44A4Q53GD3 AC004223.1-201ENST00000479840 271 ntBASIC1.34□□□□□ -2.19
SLC44A4Q53GD3 RN7SKP12-201ENST00000516275 143 ntBASIC1.34□□□□□ -2.19
SLC44A4Q53GD3 MIR2115-201ENST00000516657 100 ntBASIC1.34□□□□□ -2.19
SLC44A4Q53GD3 RNA5SP480-201ENST00000516840 109 ntBASIC1.34□□□□□ -2.19
SLC44A4Q53GD3 RNU6-1006P-201ENST00000516998 103 ntBASIC1.34□□□□□ -2.19
SLC44A4Q53GD3 AC026421.1-201ENST00000519101 163 ntBASIC1.34□□□□□ -2.19
SLC44A4Q53GD3 AC023827.1-201ENST00000569247 97 ntBASIC1.34□□□□□ -2.19
SLC44A4Q53GD3 Y_RNA.95-201ENST00000363079 95 ntBASIC1.33□□□□□ -2.2
SLC44A4Q53GD3 SNORD45B-201ENST00000364617 72 ntBASIC1.33□□□□□ -2.2
SLC44A4Q53GD3 RNU6-865P-201ENST00000364772 107 ntBASIC1.33□□□□□ -2.2
SLC44A4Q53GD3 SNORA80D-201ENST00000384488 135 ntBASIC1.33□□□□□ -2.2
SLC44A4Q53GD3 RNU6-1152P-201ENST00000384576 107 ntBASIC1.33□□□□□ -2.2
SLC44A4Q53GD3 AC004941.2-201ENST00000427009 228 ntBASIC1.33□□□□□ -2.2
SLC44A4Q53GD3 RPS29P28-201ENST00000446439 141 ntBASIC1.33□□□□□ -2.2
SLC44A4Q53GD3 RNU7-62P-201ENST00000458856 62 ntBASIC1.33□□□□□ -2.2
SLC44A4Q53GD3 RNU7-48P-201ENST00000458875 63 ntBASIC1.33□□□□□ -2.2
SLC44A4Q53GD3 AC087277.2-201ENST00000533203 151 ntTSL 5 BASIC1.33□□□□□ -2.2
SLC44A4Q53GD3 AP000753.3-201ENST00000604083 169 ntBASIC1.33□□□□□ -2.2
SLC44A4Q53GD3 MIR6515-201ENST00000619843 57 ntBASIC1.33□□□□□ -2.2
SLC44A4Q53GD3 LRRIQ1-202ENST00000393217 5394 ntAPPRIS P1 TSL 1 (best) BASIC1.32□□□□□ -2.2
SLC44A4Q53GD3 Y_RNA.73-201ENST00000362910 113 ntBASIC1.32□□□□□ -2.2
Retrieved 100 of 98,524 protein–RNA pairs in 174.1 ms