Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 FAM13A-AS1_1.1-201ENST00000612555 119 ntBASIC1.11□□□□□ -2.23
CCDC144BQ3MJ40 FAM19A1-204ENST00000617084 159 ntTSL 5 BASIC1.11□□□□□ -2.23
CCDC144BQ3MJ40 Y_RNA.42-201ENST00000362660 108 ntBASIC1.1□□□□□ -2.23
CCDC144BQ3MJ40 RNU4-58P-201ENST00000363192 141 ntBASIC1.1□□□□□ -2.23
CCDC144BQ3MJ40 RNU6-110P-201ENST00000384508 104 ntBASIC1.1□□□□□ -2.23
CCDC144BQ3MJ40 MIR532-201ENST00000385025 91 ntBASIC1.1□□□□□ -2.23
CCDC144BQ3MJ40 AC096949.1-201ENST00000412047 152 ntBASIC1.1□□□□□ -2.23
CCDC144BQ3MJ40 RNU7-2P-201ENST00000516096 62 ntBASIC1.1□□□□□ -2.23
CCDC144BQ3MJ40 Y_RNA.712-201ENST00000517011 92 ntBASIC1.1□□□□□ -2.23
CCDC144BQ3MJ40 DEFB131E-201ENST00000532329 154 ntBASIC1.1□□□□□ -2.23
CCDC144BQ3MJ40 AL359881.1-201ENST00000602916 267 ntBASIC1.1□□□□□ -2.23
CCDC144BQ3MJ40 AC087741.2-201ENST00000619415 172 ntBASIC1.1□□□□□ -2.23
CCDC144BQ3MJ40 Y_RNA.13-201ENST00000362403 112 ntBASIC1.09□□□□□ -2.23
CCDC144BQ3MJ40 Y_RNA.98-201ENST00000363109 102 ntBASIC1.09□□□□□ -2.23
CCDC144BQ3MJ40 SNORD114-26-201ENST00000363543 72 ntBASIC1.09□□□□□ -2.23
CCDC144BQ3MJ40 RNY1P2-201ENST00000364820 117 ntBASIC1.09□□□□□ -2.23
CCDC144BQ3MJ40 RNU6-959P-201ENST00000384671 107 ntBASIC1.09□□□□□ -2.23
CCDC144BQ3MJ40 MIR5000-201ENST00000577717 103 ntBASIC1.09□□□□□ -2.23
CCDC144BQ3MJ40 MIR6857-201ENST00000613267 93 ntBASIC1.09□□□□□ -2.23
CCDC144BQ3MJ40 SNORD116-14-201ENST00000383894 92 ntBASIC1.08□□□□□ -2.24
CCDC144BQ3MJ40 SNORD116-17-201ENST00000383929 92 ntBASIC1.08□□□□□ -2.24
CCDC144BQ3MJ40 RNU6-616P-201ENST00000384353 107 ntBASIC1.08□□□□□ -2.24
CCDC144BQ3MJ40 SNORD116-15-201ENST00000384445 92 ntBASIC1.08□□□□□ -2.24
CCDC144BQ3MJ40 SNORD116-19-201ENST00000384729 92 ntBASIC1.08□□□□□ -2.24
CCDC144BQ3MJ40 MIR206-201ENST00000384872 86 ntBASIC1.08□□□□□ -2.24
CCDC144BQ3MJ40 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC1.08□□□□□ -2.24
CCDC144BQ3MJ40 AC244098.3-201ENST00000424803 96 ntBASIC1.08□□□□□ -2.24
CCDC144BQ3MJ40 RNU6-1234P-201ENST00000516877 103 ntBASIC1.08□□□□□ -2.24
CCDC144BQ3MJ40 CYP3A137P-201ENST00000562436 69 ntBASIC1.08□□□□□ -2.24
CCDC144BQ3MJ40 U6.95-201ENST00000636931 70 ntBASIC1.08□□□□□ -2.24
CCDC144BQ3MJ40 RNA5SP133-201ENST00000363368 119 ntBASIC1.07□□□□□ -2.24
CCDC144BQ3MJ40 SNORD115-35-201ENST00000365122 82 ntBASIC1.07□□□□□ -2.24
CCDC144BQ3MJ40 MIR548D2-201ENST00000384955 97 ntBASIC1.07□□□□□ -2.24
CCDC144BQ3MJ40 SNORD100-201ENST00000408573 76 ntBASIC1.07□□□□□ -2.24
CCDC144BQ3MJ40 AL138808.1-201ENST00000441428 371 ntTSL 2 BASIC1.07□□□□□ -2.24
CCDC144BQ3MJ40 RNU7-107P-201ENST00000459121 61 ntBASIC1.07□□□□□ -2.24
CCDC144BQ3MJ40 RNU6-659P-201ENST00000516454 104 ntBASIC1.07□□□□□ -2.24
CCDC144BQ3MJ40 AC008608.1-201ENST00000603910 127 ntBASIC1.07□□□□□ -2.24
CCDC144BQ3MJ40 AC105081.1-201ENST00000617727 106 ntBASIC1.07□□□□□ -2.24
CCDC144BQ3MJ40 MIR3914-2-201ENST00000637339 95 ntBASIC1.07□□□□□ -2.24
CCDC144BQ3MJ40 ZNF654-201ENST00000309495 4957 ntAPPRIS P2 TSL 1 (best) BASIC1.07□□□□□ -2.24
CCDC144BQ3MJ40 Y_RNA.218-201ENST00000364218 104 ntBASIC1.06□□□□□ -2.24
CCDC144BQ3MJ40 RNU6-1187P-201ENST00000364771 110 ntBASIC1.06□□□□□ -2.24
CCDC144BQ3MJ40 RNA5SP117-201ENST00000365294 118 ntBASIC1.06□□□□□ -2.24
CCDC144BQ3MJ40 MT-TI-201ENST00000387365 69 ntBASIC1.06□□□□□ -2.24
CCDC144BQ3MJ40 RNU6ATAC41P-201ENST00000408600 126 ntBASIC1.06□□□□□ -2.24
CCDC144BQ3MJ40 RNU7-48P-201ENST00000458875 63 ntBASIC1.06□□□□□ -2.24
CCDC144BQ3MJ40 PSMC1P5-201ENST00000512850 177 ntBASIC1.06□□□□□ -2.24
CCDC144BQ3MJ40 U6.109-201ENST00000636749 87 ntBASIC1.06□□□□□ -2.24
CCDC144BQ3MJ40 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC1.05□□□□□ -2.24
CCDC144BQ3MJ40 RNU6-865P-201ENST00000364772 107 ntBASIC1.05□□□□□ -2.24
CCDC144BQ3MJ40 AC008267.6-201ENST00000441664 139 ntBASIC1.05□□□□□ -2.24
CCDC144BQ3MJ40 AC138749.4-201ENST00000563970 127 ntBASIC1.05□□□□□ -2.24
CCDC144BQ3MJ40 MIR4698-201ENST00000577795 80 ntBASIC1.05□□□□□ -2.24
CCDC144BQ3MJ40 AC132825.6-201ENST00000638861 357 ntBASIC1.05□□□□□ -2.24
CCDC144BQ3MJ40 Y_RNA.127-201ENST00000363386 109 ntBASIC1.04□□□□□ -2.24
CCDC144BQ3MJ40 Y_RNA.448-201ENST00000384185 108 ntBASIC1.04□□□□□ -2.24
CCDC144BQ3MJ40 TRAJ22-201ENST00000390515 63 ntAPPRIS P1 BASIC1.04□□□□□ -2.24
CCDC144BQ3MJ40 RNU6-1321P-201ENST00000390905 107 ntBASIC1.04□□□□□ -2.24
CCDC144BQ3MJ40 RPL39P28-201ENST00000465655 155 ntBASIC1.04□□□□□ -2.24
CCDC144BQ3MJ40 AC002350.1-201ENST00000490759 375 ntBASIC1.04□□□□□ -2.24
CCDC144BQ3MJ40 SNORA25.16-201ENST00000516741 121 ntBASIC1.04□□□□□ -2.24
CCDC144BQ3MJ40 MIR3612-201ENST00000579753 87 ntBASIC1.04□□□□□ -2.24
CCDC144BQ3MJ40 MIR4653-201ENST00000585107 83 ntBASIC1.04□□□□□ -2.24
CCDC144BQ3MJ40 Y_RNA.36-201ENST00000362602 112 ntBASIC1.03□□□□□ -2.24
CCDC144BQ3MJ40 Y_RNA.119-201ENST00000363301 96 ntBASIC1.03□□□□□ -2.24
CCDC144BQ3MJ40 RNU6-429P-201ENST00000384582 108 ntBASIC1.03□□□□□ -2.24
CCDC144BQ3MJ40 TRAJ1-201ENST00000390536 62 ntAPPRIS P1 BASIC1.03□□□□□ -2.24
CCDC144BQ3MJ40 MIR3910-1-201ENST00000580936 111 ntBASIC1.03□□□□□ -2.24
CCDC144BQ3MJ40 MIR6779-201ENST00000617283 64 ntBASIC1.03□□□□□ -2.24
CCDC144BQ3MJ40 AP001362.1-201ENST00000625165 124 ntBASIC1.03□□□□□ -2.24
CCDC144BQ3MJ40 IST1-227ENST00000626438 126 ntTSL 5 BASIC1.03□□□□□ -2.24
CCDC144BQ3MJ40 HECTD2-202ENST00000371667 4354 ntTSL 1 (best) BASIC1.02□□□□□ -2.25
CCDC144BQ3MJ40 Y_RNA.174-201ENST00000363781 105 ntBASIC1.02□□□□□ -2.25
CCDC144BQ3MJ40 Y_RNA.328-201ENST00000365208 113 ntBASIC1.02□□□□□ -2.25
CCDC144BQ3MJ40 MIR605-201ENST00000385078 83 ntBASIC1.02□□□□□ -2.25
CCDC144BQ3MJ40 RNA5SP222-201ENST00000411039 105 ntBASIC1.02□□□□□ -2.25
CCDC144BQ3MJ40 Y_RNA.630-201ENST00000411370 108 ntBASIC1.02□□□□□ -2.25
CCDC144BQ3MJ40 Y_RNA.697-201ENST00000516776 113 ntBASIC1.02□□□□□ -2.25
CCDC144BQ3MJ40 MIR101-2-201ENST00000362195 79 ntBASIC1.01□□□□□ -2.25
CCDC144BQ3MJ40 AC004941.2-201ENST00000427009 228 ntBASIC1.01□□□□□ -2.25
CCDC144BQ3MJ40 RNU6-62P-201ENST00000516526 102 ntBASIC1.01□□□□□ -2.25
CCDC144BQ3MJ40 RNU6-531P-201ENST00000516694 104 ntBASIC1.01□□□□□ -2.25
CCDC144BQ3MJ40 Y_RNA.507-201ENST00000384500 99 ntBASIC1□□□□□ -2.25
CCDC144BQ3MJ40 RNU6-1117P-201ENST00000384525 104 ntBASIC1□□□□□ -2.25
CCDC144BQ3MJ40 Y_RNA.649-201ENST00000459077 103 ntBASIC1□□□□□ -2.25
CCDC144BQ3MJ40 RNU6-1333P-201ENST00000516162 93 ntBASIC1□□□□□ -2.25
CCDC144BQ3MJ40 RNU6-789P-201ENST00000517105 102 ntBASIC1□□□□□ -2.25
CCDC144BQ3MJ40 Y_RNA.536-201ENST00000384621 113 ntBASIC0.99□□□□□ -2.25
CCDC144BQ3MJ40 RNU6-735P-201ENST00000410612 107 ntBASIC0.99□□□□□ -2.25
CCDC144BQ3MJ40 RNU6-521P-201ENST00000516663 105 ntBASIC0.99□□□□□ -2.25
CCDC144BQ3MJ40 RNU6-135P-201ENST00000516769 101 ntBASIC0.99□□□□□ -2.25
CCDC144BQ3MJ40 MIR4679-2-201ENST00000578358 77 ntBASIC0.99□□□□□ -2.25
CCDC144BQ3MJ40 AC013244.2-201ENST00000603396 103 ntBASIC0.99□□□□□ -2.25
CCDC144BQ3MJ40 Y_RNA.773-201ENST00000607168 90 ntBASIC0.99□□□□□ -2.25
CCDC144BQ3MJ40 MIR18A-201ENST00000362310 71 ntBASIC0.98□□□□□ -2.25
CCDC144BQ3MJ40 MIR548A3-201ENST00000385297 97 ntBASIC0.98□□□□□ -2.25
CCDC144BQ3MJ40 RPL39P34-201ENST00000477141 156 ntBASIC0.98□□□□□ -2.25
CCDC144BQ3MJ40 RNU6-469P-201ENST00000516253 101 ntBASIC0.98□□□□□ -2.25
CCDC144BQ3MJ40 RNU7-10P-201ENST00000607194 63 ntBASIC0.98□□□□□ -2.25
Retrieved 100 of 98,524 protein–RNA pairs in 105.6 ms