Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 AL606490.4-201ENST00000423117 127 ntBASIC2.28□□□□□ -2.04
COL8A1P27658 TRAJ51-201ENST00000504127 63 ntBASIC2.28□□□□□ -2.04
COL8A1P27658 SNORA25.16-201ENST00000516741 121 ntBASIC2.28□□□□□ -2.04
COL8A1P27658 AP000942.3-201ENST00000603702 160 ntBASIC2.28□□□□□ -2.04
COL8A1P27658 MTRNR2L2-201ENST00000604882 87 ntBASIC2.28□□□□□ -2.04
COL8A1P27658 AC046143.2-201ENST00000609789 160 ntBASIC2.28□□□□□ -2.04
COL8A1P27658 SLC6A15-202ENST00000309283 3108 ntTSL 5 BASIC2.28□□□□□ -2.04
COL8A1P27658 ZBBX-204ENST00000392767 3071 ntAPPRIS ALT2 TSL 5 BASIC2.28□□□□□ -2.05
COL8A1P27658 PIK3CA-201ENST00000263967 9093 ntAPPRIS P1 TSL 2 BASIC2.28□□□□□ -2.05
COL8A1P27658 DYNC2H1-202ENST00000375735 13678 ntAPPRIS ALT1 TSL 1 (best) BASIC2.28□□□□□ -2.05
COL8A1P27658 TAB3-205ENST00000378933 6671 ntAPPRIS P1 TSL 1 (best) BASIC2.27□□□□□ -2.05
COL8A1P27658 AKAP9-202ENST00000358100 10309 ntTSL 1 (best) BASIC2.27□□□□□ -2.05
COL8A1P27658 RNU1-148P-201ENST00000384472 162 ntBASIC2.27□□□□□ -2.05
COL8A1P27658 Y_RNA.536-201ENST00000384621 113 ntBASIC2.27□□□□□ -2.05
COL8A1P27658 RNU6ATAC33P-201ENST00000408647 126 ntBASIC2.27□□□□□ -2.05
COL8A1P27658 MIR1302-7-201ENST00000408841 72 ntBASIC2.27□□□□□ -2.05
COL8A1P27658 AL691482.2-201ENST00000457453 84 ntBASIC2.27□□□□□ -2.05
COL8A1P27658 Y_RNA.809-201ENST00000516058 95 ntBASIC2.27□□□□□ -2.05
COL8A1P27658 RNU6-752P-201ENST00000516376 102 ntBASIC2.27□□□□□ -2.05
COL8A1P27658 SNORD111.1-201ENST00000516421 86 ntBASIC2.27□□□□□ -2.05
COL8A1P27658 MIR548H5-201ENST00000580314 60 ntBASIC2.27□□□□□ -2.05
COL8A1P27658 DLEU2_3.2-201ENST00000612883 73 ntBASIC2.27□□□□□ -2.05
COL8A1P27658 MIR6733-201ENST00000635723 61 ntBASIC2.27□□□□□ -2.05
COL8A1P27658 ARHGAP5-202ENST00000345122 9604 ntAPPRIS P3 TSL 5 BASIC2.26□□□□□ -2.05
COL8A1P27658 MT-TN-201ENST00000387400 73 ntBASIC2.26□□□□□ -2.05
COL8A1P27658 Y_RNA.588-201ENST00000391254 102 ntBASIC2.26□□□□□ -2.05
COL8A1P27658 GHRL-208ENST00000439975 326 ntTSL 1 (best) BASIC2.26□□□□□ -2.05
COL8A1P27658 RNU7-62P-201ENST00000458856 62 ntBASIC2.26□□□□□ -2.05
COL8A1P27658 AC034238.1-213ENST00000611148 150 ntTSL 5 BASIC2.26□□□□□ -2.05
COL8A1P27658 AL109933.3-201ENST00000619095 188 ntBASIC2.26□□□□□ -2.05
COL8A1P27658 U6.100-201ENST00000636230 99 ntBASIC2.26□□□□□ -2.05
COL8A1P27658 PCM1-222ENST00000524226 5955 ntTSL 1 (best) BASIC2.26□□□□□ -2.05
COL8A1P27658 AP006437.1-201ENST00000641440 3685 ntBASIC2.26□□□□□ -2.05
COL8A1P27658 OR51A4-202ENST00000641898 4393 ntAPPRIS P1 BASIC2.26□□□□□ -2.05
COL8A1P27658 BRCA1-202ENST00000354071 4497 ntTSL 1 (best) BASIC2.26□□□□□ -2.05
COL8A1P27658 SIRT1-202ENST00000403579 3333 ntTSL 1 (best) BASIC2.25□□□□□ -2.05
COL8A1P27658 SLITRK6-201ENST00000400286 4318 ntAPPRIS P1 TSL 1 (best) BASIC2.25□□□□□ -2.05
COL8A1P27658 DNAH7-201ENST00000312428 12394 ntAPPRIS P1 TSL 1 (best) BASIC2.25□□□□□ -2.05
COL8A1P27658 IL6ST-201ENST00000336909 8776 ntAPPRIS P1 TSL 2 BASIC2.25□□□□□ -2.05
COL8A1P27658 MIR518A2-201ENST00000384966 87 ntBASIC2.25□□□□□ -2.05
COL8A1P27658 U8.13-201ENST00000390842 128 ntBASIC2.25□□□□□ -2.05
COL8A1P27658 RNU6-935P-201ENST00000410371 100 ntBASIC2.25□□□□□ -2.05
COL8A1P27658 RNA5SP501-201ENST00000410990 112 ntBASIC2.25□□□□□ -2.05
COL8A1P27658 Y_RNA.722-201ENST00000517279 114 ntBASIC2.25□□□□□ -2.05
COL8A1P27658 AC022596.1-201ENST00000582895 302 ntTSL 5 BASIC2.25□□□□□ -2.05
COL8A1P27658 IST1-227ENST00000626438 126 ntTSL 5 BASIC2.25□□□□□ -2.05
COL8A1P27658 ZNF470-202ENST00000391709 6601 ntAPPRIS P1 TSL 5 BASIC2.25□□□□□ -2.05
COL8A1P27658 MIR101-2-201ENST00000362195 79 ntBASIC2.24□□□□□ -2.05
COL8A1P27658 RPL30P7-201ENST00000479312 323 ntBASIC2.24□□□□□ -2.05
COL8A1P27658 VTRNA2-2P-201ENST00000516091 103 ntBASIC2.24□□□□□ -2.05
COL8A1P27658 SIRT1-203ENST00000406900 3295 ntTSL 2 BASIC2.23□□□□□ -2.05
COL8A1P27658 STX7-202ENST00000367941 15791 ntAPPRIS P1 TSL 1 (best) BASIC2.23□□□□□ -2.05
COL8A1P27658 SLC4A7-201ENST00000295736 7757 ntAPPRIS P3 TSL 1 (best) BASIC2.23□□□□□ -2.05
COL8A1P27658 BRDT-206ENST00000402388 3125 ntAPPRIS P3 TSL 1 (best) BASIC2.23□□□□□ -2.05
COL8A1P27658 RNU6-360P-201ENST00000390944 104 ntBASIC2.23□□□□□ -2.05
COL8A1P27658 AL355388.1-201ENST00000415726 401 ntTSL 2 BASIC2.23□□□□□ -2.05
COL8A1P27658 AC003982.1-202ENST00000469928 248 ntBASIC2.23□□□□□ -2.05
COL8A1P27658 AC032019.2-201ENST00000584916 403 ntTSL 5 BASIC2.23□□□□□ -2.05
COL8A1P27658 MIR4781-201ENST00000585250 76 ntBASIC2.23□□□□□ -2.05
COL8A1P27658 CACNB4-228ENST00000636598 7808 ntTSL 5 BASIC2.23□□□□□ -2.05
COL8A1P27658 ASPM-202ENST00000367408 3747 ntTSL 1 (best) BASIC2.23□□□□□ -2.05
COL8A1P27658 SACS-201ENST00000382292 15324 ntAPPRIS P1 TSL 5 BASIC2.23□□□□□ -2.05
COL8A1P27658 RNU6-1079P-201ENST00000362861 110 ntBASIC2.22□□□□□ -2.05
COL8A1P27658 SNORA25.3-201ENST00000363205 127 ntBASIC2.22□□□□□ -2.05
COL8A1P27658 MIR627-201ENST00000384979 97 ntBASIC2.22□□□□□ -2.05
COL8A1P27658 RNU6-808P-201ENST00000391233 108 ntBASIC2.22□□□□□ -2.05
COL8A1P27658 SNORD93-201ENST00000408813 74 ntBASIC2.22□□□□□ -2.05
COL8A1P27658 AL356320.1-201ENST00000429616 163 ntBASIC2.22□□□□□ -2.05
COL8A1P27658 RNU6-274P-201ENST00000459566 107 ntBASIC2.22□□□□□ -2.05
COL8A1P27658 RNU6-542P-201ENST00000516405 103 ntBASIC2.22□□□□□ -2.05
COL8A1P27658 MIR2115-201ENST00000516657 100 ntBASIC2.22□□□□□ -2.05
COL8A1P27658 MIR1273D-201ENST00000577266 86 ntBASIC2.22□□□□□ -2.05
COL8A1P27658 ZBBX-205ENST00000455345 3185 ntAPPRIS ALT2 TSL 1 (best) BASIC2.22□□□□□ -2.05
COL8A1P27658 Y_RNA.56-201ENST00000362798 112 ntBASIC2.21□□□□□ -2.06
COL8A1P27658 RNU6-654P-201ENST00000364373 107 ntBASIC2.21□□□□□ -2.06
COL8A1P27658 MIR451A-201ENST00000385059 72 ntBASIC2.21□□□□□ -2.06
COL8A1P27658 RPS29P6-201ENST00000438196 145 ntBASIC2.21□□□□□ -2.06
COL8A1P27658 MIR514B-201ENST00000516774 80 ntBASIC2.21□□□□□ -2.06
COL8A1P27658 MIR4635-201ENST00000583759 79 ntBASIC2.21□□□□□ -2.06
COL8A1P27658 MIR3192-201ENST00000584920 77 ntBASIC2.21□□□□□ -2.06
COL8A1P27658 uc_338.6-201ENST00000613544 171 ntBASIC2.21□□□□□ -2.06
COL8A1P27658 RNF219-AS1-214ENST00000607862 6001 ntTSL 1 (best) BASIC2.21□□□□□ -2.06
COL8A1P27658 MIR377-201ENST00000362145 69 ntBASIC2.2□□□□□ -2.06
COL8A1P27658 SNORA16B-201ENST00000364674 135 ntBASIC2.2□□□□□ -2.06
COL8A1P27658 RNU6-1177P-201ENST00000391058 104 ntBASIC2.2□□□□□ -2.06
COL8A1P27658 RNU6-1052P-201ENST00000411398 104 ntBASIC2.2□□□□□ -2.06
COL8A1P27658 RNU6-1053P-201ENST00000515930 101 ntBASIC2.2□□□□□ -2.06
COL8A1P27658 RNA5SP282-201ENST00000516355 108 ntBASIC2.2□□□□□ -2.06
COL8A1P27658 RNU6-719P-201ENST00000516671 104 ntBASIC2.2□□□□□ -2.06
COL8A1P27658 AC092634.7-201ENST00000621022 103 ntBASIC2.2□□□□□ -2.06
COL8A1P27658 MIR4773-1-201ENST00000637203 78 ntBASIC2.2□□□□□ -2.06
COL8A1P27658 RNU6-403P-201ENST00000363163 104 ntBASIC2.19□□□□□ -2.06
COL8A1P27658 RNU6-940P-201ENST00000363433 104 ntBASIC2.19□□□□□ -2.06
COL8A1P27658 RNU1-36P-201ENST00000365130 165 ntBASIC2.19□□□□□ -2.06
COL8A1P27658 RNU1-51P-201ENST00000365345 176 ntBASIC2.19□□□□□ -2.06
COL8A1P27658 Y_RNA.355-201ENST00000365462 98 ntBASIC2.19□□□□□ -2.06
COL8A1P27658 RNU6-203P-201ENST00000384038 104 ntBASIC2.19□□□□□ -2.06
COL8A1P27658 MIR194-1-201ENST00000384892 85 ntBASIC2.19□□□□□ -2.06
COL8A1P27658 AC004965.1-201ENST00000413033 213 ntBASIC2.19□□□□□ -2.06
COL8A1P27658 AC244098.3-201ENST00000424803 96 ntBASIC2.19□□□□□ -2.06
Retrieved 100 of 98,524 protein–RNA pairs in 3406.7 ms