Protein–RNA interactions for Protein: P16070

CD44, CD44 antigen, humanhuman

Known RBP Predictions only

Length 742 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CD44P16070 SLC39A10-201ENST00000359634 5322 ntAPPRIS P1 TSL 1 (best) BASIC3.22□□□□□ -1.89
CD44P16070 MIPOL1-203ENST00000537471 5954 ntAPPRIS P1 TSL 5 BASIC3.22□□□□□ -1.89
CD44P16070 RNA5SP374-201ENST00000362939 125 ntBASIC3.22□□□□□ -1.89
CD44P16070 Y_RNA.250-201ENST00000364542 110 ntBASIC3.22□□□□□ -1.89
CD44P16070 SNORD116.2-201ENST00000391251 93 ntBASIC3.22□□□□□ -1.89
CD44P16070 AC018659.1-201ENST00000551083 169 ntBASIC3.22□□□□□ -1.89
CD44P16070 FGF7-201ENST00000267843 5467 ntAPPRIS P1 TSL 1 (best) BASIC3.22□□□□□ -1.89
CD44P16070 PRKD3-202ENST00000379066 6111 ntAPPRIS P1 TSL 5 BASIC3.22□□□□□ -1.89
CD44P16070 ROS1-202ENST00000368508 7435 ntAPPRIS P2 TSL 1 (best) BASIC3.22□□□□□ -1.89
CD44P16070 NEB-204ENST00000409198 20637 ntAPPRIS P3 TSL 5 BASIC3.22□□□□□ -1.89
CD44P16070 ATP11C-202ENST00000361648 6010 ntAPPRIS ALT2 TSL 1 (best) BASIC3.21□□□□□ -1.9
CD44P16070 CHD9-218ENST00000566029 13110 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.9
CD44P16070 ZNF658B-202ENST00000615961 3375 ntBASIC3.21□□□□□ -1.9
CD44P16070 PHF3-202ENST00000393387 6947 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.9
CD44P16070 MIR103A2-201ENST00000362154 78 ntBASIC3.21□□□□□ -1.9
CD44P16070 MIR617-201ENST00000385030 97 ntBASIC3.21□□□□□ -1.9
CD44P16070 MIR513A1-201ENST00000385138 129 ntBASIC3.21□□□□□ -1.9
CD44P16070 AC067940.1-201ENST00000458411 300 ntBASIC3.21□□□□□ -1.9
CD44P16070 ASPM-202ENST00000367408 3747 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
CD44P16070 RNU6V-201ENST00000384105 107 ntBASIC3.2□□□□□ -1.9
CD44P16070 MIR7-3-201ENST00000384898 110 ntBASIC3.2□□□□□ -1.9
CD44P16070 RNA5SP171-201ENST00000391071 115 ntBASIC3.2□□□□□ -1.9
CD44P16070 RNU6ATAC29P-201ENST00000408088 125 ntBASIC3.2□□□□□ -1.9
CD44P16070 RNU6ATAC6P-201ENST00000408132 126 ntBASIC3.2□□□□□ -1.9
CD44P16070 RNF219-AS1-214ENST00000607862 6001 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
CD44P16070 CENPE-201ENST00000265148 8612 ntAPPRIS P1 TSL 2 BASIC3.19□□□□□ -1.9
CD44P16070 SNORA71.1-201ENST00000364523 117 ntBASIC3.19□□□□□ -1.9
CD44P16070 MIR125B2-201ENST00000385128 89 ntBASIC3.19□□□□□ -1.9
CD44P16070 SNORD83.1-201ENST00000411362 77 ntBASIC3.19□□□□□ -1.9
CD44P16070 UBBP3-201ENST00000445497 241 ntBASIC3.19□□□□□ -1.9
CD44P16070 AL133373.1-201ENST00000497098 94 ntBASIC3.19□□□□□ -1.9
CD44P16070 NPPA-AS1_3.1-201ENST00000617059 108 ntBASIC3.19□□□□□ -1.9
CD44P16070 MIR6075-201ENST00000620782 95 ntBASIC3.19□□□□□ -1.9
CD44P16070 U6.98-201ENST00000637157 84 ntBASIC3.19□□□□□ -1.9
CD44P16070 PPIP5K2-203ENST00000414217 5842 ntAPPRIS P3 TSL 1 (best) BASIC3.18□□□□□ -1.9
CD44P16070 KIAA1841-211ENST00000612149 4202 ntTSL 5 BASIC3.18□□□□□ -1.9
CD44P16070 HDX-201ENST00000297977 6200 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
CD44P16070 MIR1289-1-201ENST00000408836 144 ntBASIC3.18□□□□□ -1.9
CD44P16070 ADARB1-213ENST00000611195 159 ntTSL 5 BASIC3.18□□□□□ -1.9
CD44P16070 SLC6A15-202ENST00000309283 3108 ntTSL 5 BASIC3.18□□□□□ -1.9
CD44P16070 KTN1-206ENST00000413890 4473 ntAPPRIS ALT2 TSL 5 BASIC3.17□□□□□ -1.9
CD44P16070 RASSF8-210ENST00000541490 5505 ntAPPRIS P1 TSL 5 BASIC3.17□□□□□ -1.9
CD44P16070 RGPD6-201ENST00000329516 7165 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
CD44P16070 RNA5SP264-201ENST00000363115 107 ntBASIC3.17□□□□□ -1.9
CD44P16070 MIR591-201ENST00000385290 95 ntBASIC3.17□□□□□ -1.9
CD44P16070 GHRLOS.1-201ENST00000610995 70 ntBASIC3.17□□□□□ -1.9
CD44P16070 EVI5-201ENST00000370331 7403 ntAPPRIS P3 TSL 1 (best) BASIC3.16□□□□□ -1.9
CD44P16070 RNU1-51P-201ENST00000365345 176 ntBASIC3.16□□□□□ -1.9
CD44P16070 MIR512-1-201ENST00000384913 84 ntBASIC3.16□□□□□ -1.9
CD44P16070 MIR519E-201ENST00000385075 84 ntBASIC3.16□□□□□ -1.9
CD44P16070 AL161935.2-201ENST00000414627 60 ntBASIC3.16□□□□□ -1.9
CD44P16070 RNU6-250P-201ENST00000516958 103 ntBASIC3.16□□□□□ -1.9
CD44P16070 U1.36-201ENST00000620684 176 ntBASIC3.16□□□□□ -1.9
CD44P16070 KIAA1107-201ENST00000370378 4622 ntTSL 5 BASIC3.16□□□□□ -1.9
CD44P16070 GCNT4-201ENST00000322348 5554 ntAPPRIS P1 BASIC3.16□□□□□ -1.9
CD44P16070 C5orf51-201ENST00000381647 5241 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
CD44P16070 CCDC168-201ENST00000322527 21466 ntAPPRIS P1 TSL 3 BASIC3.15□□□□□ -1.9
CD44P16070 KIAA1107-202ENST00000636278 4065 ntAPPRIS P1 TSL 5 BASIC3.15□□□□□ -1.91
CD44P16070 RNU6-247P-201ENST00000362636 107 ntBASIC3.15□□□□□ -1.91
CD44P16070 RNA5SP403-201ENST00000363598 108 ntBASIC3.15□□□□□ -1.91
CD44P16070 SNORA9.2-201ENST00000365361 133 ntBASIC3.15□□□□□ -1.91
CD44P16070 MIR34B-201ENST00000385076 84 ntBASIC3.15□□□□□ -1.91
CD44P16070 RNU6-947P-201ENST00000516264 106 ntBASIC3.15□□□□□ -1.91
CD44P16070 MIR1254-2-201ENST00000579553 63 ntBASIC3.15□□□□□ -1.91
CD44P16070 MIR6733-201ENST00000635723 61 ntBASIC3.15□□□□□ -1.91
CD44P16070 EYS-204ENST00000370621 10485 ntAPPRIS ALT2 TSL 1 (best) BASIC3.15□□□□□ -1.91
CD44P16070 SNORA9-201ENST00000384215 133 ntBASIC3.14□□□□□ -1.91
CD44P16070 SNORA48.7-201ENST00000391302 135 ntBASIC3.14□□□□□ -1.91
CD44P16070 RN7SKP123-201ENST00000410732 291 ntBASIC3.14□□□□□ -1.91
CD44P16070 MIR3651-201ENST00000630427 90 ntBASIC3.14□□□□□ -1.91
CD44P16070 USP45-208ENST00000500704 5826 ntAPPRIS P1 TSL 5 BASIC3.13□□□□□ -1.91
CD44P16070 AL021368.2-201ENST00000606125 5352 ntBASIC3.13□□□□□ -1.91
CD44P16070 UBE3A-225ENST00000636667 5726 ntTSL 5 BASIC3.13□□□□□ -1.91
CD44P16070 SNORA38.1-201ENST00000364172 131 ntBASIC3.13□□□□□ -1.91
CD44P16070 MIR7110-201ENST00000612638 86 ntBASIC3.13□□□□□ -1.91
CD44P16070 LINC00393-201ENST00000443621 282 ntTSL 3 BASIC3.12□□□□□ -1.91
CD44P16070 MIR4506-201ENST00000584693 77 ntBASIC3.12□□□□□ -1.91
CD44P16070 LINC00643-201ENST00000334389 3247 ntTSL 2 BASIC3.12□□□□□ -1.91
CD44P16070 CLOCK-201ENST00000309964 10304 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
CD44P16070 MIR422A-201ENST00000362286 90 ntBASIC3.11□□□□□ -1.91
CD44P16070 RNU6-934P-201ENST00000365154 107 ntBASIC3.11□□□□□ -1.91
CD44P16070 Y_RNA.325-201ENST00000365171 122 ntBASIC3.11□□□□□ -1.91
CD44P16070 SNORA40B-201ENST00000385573 128 ntBASIC3.11□□□□□ -1.91
CD44P16070 RNA5SP385-201ENST00000515947 110 ntBASIC3.11□□□□□ -1.91
CD44P16070 MIR8057-201ENST00000620957 69 ntBASIC3.11□□□□□ -1.91
CD44P16070 SNORA50A-202ENST00000629536 136 ntBASIC3.11□□□□□ -1.91
CD44P16070 Y_RNA.246-201ENST00000364495 108 ntBASIC3.1□□□□□ -1.91
CD44P16070 SNORD88.1-201ENST00000408684 91 ntBASIC3.1□□□□□ -1.91
CD44P16070 RNU1-41P-201ENST00000516161 162 ntBASIC3.1□□□□□ -1.91
CD44P16070 RNU1-48P-201ENST00000516400 162 ntBASIC3.1□□□□□ -1.91
CD44P16070 MIR6798-201ENST00000612887 67 ntBASIC3.1□□□□□ -1.91
CD44P16070 GABRG2-215ENST00000639213 9960 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
CD44P16070 FOXP2-211ENST00000408937 6443 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
CD44P16070 TRAJ31-201ENST00000390506 57 ntAPPRIS P1 BASIC3.09□□□□□ -1.91
CD44P16070 RNU6-696P-201ENST00000390834 107 ntBASIC3.09□□□□□ -1.91
CD44P16070 snoU13.13-201ENST00000458842 104 ntBASIC3.09□□□□□ -1.91
CD44P16070 SNORA74D-201ENST00000516404 141 ntBASIC3.09□□□□□ -1.91
CD44P16070 RNU7-161P-201ENST00000517289 62 ntBASIC3.09□□□□□ -1.91
CD44P16070 MIR4771-2-201ENST00000577758 74 ntBASIC3.09□□□□□ -1.91
CD44P16070 MIR4771-1-201ENST00000582617 74 ntBASIC3.09□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 107.9 ms