Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 AC032019.2-201ENST00000584916 403 ntTSL 5 BASIC2.92□□□□□ -1.94
VPS9D1Q9Y2B5 MCF2-208ENST00000519895 3346 ntAPPRIS ALT2 TSL 2 BASIC2.92□□□□□ -1.94
VPS9D1Q9Y2B5 HECTD2-202ENST00000371667 4354 ntTSL 1 (best) BASIC2.91□□□□□ -1.94
VPS9D1Q9Y2B5 FOXP2-211ENST00000408937 6443 ntTSL 1 (best) BASIC2.91□□□□□ -1.94
VPS9D1Q9Y2B5 Y_RNA.56-201ENST00000362798 112 ntBASIC2.91□□□□□ -1.94
VPS9D1Q9Y2B5 RNU6-403P-201ENST00000363163 104 ntBASIC2.91□□□□□ -1.94
VPS9D1Q9Y2B5 SNORA16B-201ENST00000364674 135 ntBASIC2.91□□□□□ -1.94
VPS9D1Q9Y2B5 MIR634-201ENST00000385208 97 ntBASIC2.91□□□□□ -1.94
VPS9D1Q9Y2B5 RNU6-1177P-201ENST00000391058 104 ntBASIC2.91□□□□□ -1.94
VPS9D1Q9Y2B5 AC022018.1-201ENST00000430685 241 ntBASIC2.91□□□□□ -1.94
VPS9D1Q9Y2B5 MTND4LP1-201ENST00000446263 157 ntBASIC2.91□□□□□ -1.94
VPS9D1Q9Y2B5 RNA5SP341-201ENST00000516261 117 ntBASIC2.91□□□□□ -1.94
VPS9D1Q9Y2B5 MIR3192-201ENST00000584920 77 ntBASIC2.91□□□□□ -1.94
VPS9D1Q9Y2B5 uc_338.6-201ENST00000613544 171 ntBASIC2.91□□□□□ -1.94
VPS9D1Q9Y2B5 SCN1A-219ENST00000641575 12874 ntAPPRIS ALT1 BASIC2.91□□□□□ -1.94
VPS9D1Q9Y2B5 MAP3K2-203ENST00000409947 10992 ntAPPRIS P1 TSL 1 (best) BASIC2.9□□□□□ -1.94
VPS9D1Q9Y2B5 OR51A4-202ENST00000641898 4393 ntAPPRIS P1 BASIC2.9□□□□□ -1.94
VPS9D1Q9Y2B5 FOXP2-210ENST00000403559 6415 ntTSL 2 BASIC2.9□□□□□ -1.94
VPS9D1Q9Y2B5 RNU6-940P-201ENST00000363433 104 ntBASIC2.9□□□□□ -1.95
VPS9D1Q9Y2B5 RNU6-360P-201ENST00000390944 104 ntBASIC2.9□□□□□ -1.95
VPS9D1Q9Y2B5 ATP6V0E1P3-201ENST00000420036 246 ntBASIC2.9□□□□□ -1.95
VPS9D1Q9Y2B5 AC244098.3-201ENST00000424803 96 ntBASIC2.9□□□□□ -1.95
VPS9D1Q9Y2B5 RNU6-982P-201ENST00000516216 102 ntBASIC2.9□□□□□ -1.95
VPS9D1Q9Y2B5 AC013244.2-201ENST00000603396 103 ntBASIC2.9□□□□□ -1.95
VPS9D1Q9Y2B5 AL137790.1-201ENST00000634283 177 ntBASIC2.9□□□□□ -1.95
VPS9D1Q9Y2B5 MIR422A-201ENST00000362286 90 ntBASIC2.89□□□□□ -1.95
VPS9D1Q9Y2B5 RNU6-668P-201ENST00000364180 107 ntBASIC2.89□□□□□ -1.95
VPS9D1Q9Y2B5 RNU1-36P-201ENST00000365130 165 ntBASIC2.89□□□□□ -1.95
VPS9D1Q9Y2B5 Y_RNA.510-201ENST00000384511 114 ntBASIC2.89□□□□□ -1.95
VPS9D1Q9Y2B5 MIR512-1-201ENST00000384913 84 ntBASIC2.89□□□□□ -1.95
VPS9D1Q9Y2B5 RNA5SP344-201ENST00000411081 104 ntBASIC2.89□□□□□ -1.95
VPS9D1Q9Y2B5 RNU6-1054P-201ENST00000411293 104 ntBASIC2.89□□□□□ -1.95
VPS9D1Q9Y2B5 LINC00393-201ENST00000443621 282 ntTSL 3 BASIC2.89□□□□□ -1.95
VPS9D1Q9Y2B5 MIR514B-201ENST00000516774 80 ntBASIC2.89□□□□□ -1.95
VPS9D1Q9Y2B5 AL033523.1-201ENST00000605153 153 ntBASIC2.89□□□□□ -1.95
VPS9D1Q9Y2B5 AL162274.2-201ENST00000614406 332 ntBASIC2.89□□□□□ -1.95
VPS9D1Q9Y2B5 NPPA-AS1_3.1-201ENST00000617059 108 ntBASIC2.89□□□□□ -1.95
VPS9D1Q9Y2B5 AC006386.2-201ENST00000624491 75 ntBASIC2.89□□□□□ -1.95
VPS9D1Q9Y2B5 AC012005.1-201ENST00000624575 75 ntBASIC2.89□□□□□ -1.95
VPS9D1Q9Y2B5 CHD9-203ENST00000447540 11509 ntTSL 5 BASIC2.89□□□□□ -1.95
VPS9D1Q9Y2B5 DYNC2H1-202ENST00000375735 13678 ntAPPRIS ALT1 TSL 1 (best) BASIC2.89□□□□□ -1.95
VPS9D1Q9Y2B5 OR4K2-204ENST00000641885 8681 ntAPPRIS P1 BASIC2.89□□□□□ -1.95
VPS9D1Q9Y2B5 KIAA0825-203ENST00000513200 4942 ntTSL 5 BASIC2.88□□□□□ -1.95
VPS9D1Q9Y2B5 GCNT4-201ENST00000322348 5554 ntAPPRIS P1 BASIC2.88□□□□□ -1.95
VPS9D1Q9Y2B5 SNORA25.5-201ENST00000363782 126 ntBASIC2.88□□□□□ -1.95
VPS9D1Q9Y2B5 RNU6-382P-201ENST00000365181 106 ntBASIC2.88□□□□□ -1.95
VPS9D1Q9Y2B5 RNU6-203P-201ENST00000384038 104 ntBASIC2.88□□□□□ -1.95
VPS9D1Q9Y2B5 MIR627-201ENST00000384979 97 ntBASIC2.88□□□□□ -1.95
VPS9D1Q9Y2B5 AC009487.2-201ENST00000420969 6821 ntBASIC2.88□□□□□ -1.95
VPS9D1Q9Y2B5 RNU6-1335P-201ENST00000365426 107 ntBASIC2.87□□□□□ -1.95
VPS9D1Q9Y2B5 AC003982.1-202ENST00000469928 248 ntBASIC2.87□□□□□ -1.95
VPS9D1Q9Y2B5 WDR3-201ENST00000349139 9974 ntAPPRIS P1 TSL 1 (best) BASIC2.87□□□□□ -1.95
VPS9D1Q9Y2B5 ATP11C-202ENST00000361648 6010 ntAPPRIS ALT2 TSL 1 (best) BASIC2.87□□□□□ -1.95
VPS9D1Q9Y2B5 TDRD15-201ENST00000405799 6135 ntAPPRIS P1 TSL 2 BASIC2.87□□□□□ -1.95
VPS9D1Q9Y2B5 FPGT-TNNI3K-202ENST00000370895 7566 ntTSL 2 BASIC2.86□□□□□ -1.95
VPS9D1Q9Y2B5 RNA5SP192-201ENST00000364404 120 ntBASIC2.86□□□□□ -1.95
VPS9D1Q9Y2B5 RNA5SP117-201ENST00000365294 118 ntBASIC2.86□□□□□ -1.95
VPS9D1Q9Y2B5 RNU1-51P-201ENST00000365345 176 ntBASIC2.86□□□□□ -1.95
VPS9D1Q9Y2B5 Y_RNA.375-201ENST00000365625 101 ntBASIC2.86□□□□□ -1.95
VPS9D1Q9Y2B5 RNU6-936P-201ENST00000384005 107 ntBASIC2.86□□□□□ -1.95
VPS9D1Q9Y2B5 AC004965.1-201ENST00000413033 213 ntBASIC2.86□□□□□ -1.95
VPS9D1Q9Y2B5 AC097635.1-201ENST00000450678 155 ntBASIC2.86□□□□□ -1.95
VPS9D1Q9Y2B5 MIR18B-201ENST00000454574 71 ntBASIC2.86□□□□□ -1.95
VPS9D1Q9Y2B5 S100A11P2-201ENST00000467589 312 ntBASIC2.86□□□□□ -1.95
VPS9D1Q9Y2B5 RN7SL274P-201ENST00000492268 272 ntBASIC2.86□□□□□ -1.95
VPS9D1Q9Y2B5 Y_RNA.697-201ENST00000516776 113 ntBASIC2.86□□□□□ -1.95
VPS9D1Q9Y2B5 U1.36-201ENST00000620684 176 ntBASIC2.86□□□□□ -1.95
VPS9D1Q9Y2B5 MIR6852-201ENST00000621699 66 ntBASIC2.86□□□□□ -1.95
VPS9D1Q9Y2B5 ZMYM1-210ENST00000611874 4466 ntAPPRIS P1 TSL 2 BASIC2.85□□□□□ -1.95
VPS9D1Q9Y2B5 FTX-214ENST00000638437 12267 ntTSL 5 BASIC2.85□□□□□ -1.95
VPS9D1Q9Y2B5 MIR26A1-201ENST00000362205 77 ntBASIC2.85□□□□□ -1.95
VPS9D1Q9Y2B5 SNORD88.1-201ENST00000408684 91 ntBASIC2.85□□□□□ -1.95
VPS9D1Q9Y2B5 MIR3605-201ENST00000583214 100 ntBASIC2.85□□□□□ -1.95
VPS9D1Q9Y2B5 FAM46D-201ENST00000308293 3011 ntAPPRIS P1 TSL 1 (best) BASIC2.85□□□□□ -1.95
VPS9D1Q9Y2B5 FGF7-206ENST00000614567 3936 ntAPPRIS P1 TSL 1 (best) BASIC2.85□□□□□ -1.95
VPS9D1Q9Y2B5 RNU6-446P-201ENST00000362827 106 ntBASIC2.84□□□□□ -1.95
VPS9D1Q9Y2B5 SNORD41-201ENST00000386967 70 ntBASIC2.84□□□□□ -1.95
VPS9D1Q9Y2B5 U3.27-201ENST00000391237 200 ntBASIC2.84□□□□□ -1.95
VPS9D1Q9Y2B5 RNA5SP100-201ENST00000410903 110 ntBASIC2.84□□□□□ -1.95
VPS9D1Q9Y2B5 RNA5SP59-201ENST00000410922 110 ntBASIC2.84□□□□□ -1.95
VPS9D1Q9Y2B5 5S_rRNA.3-201ENST00000517021 110 ntBASIC2.84□□□□□ -1.95
VPS9D1Q9Y2B5 RNU6-1057P-201ENST00000517162 102 ntBASIC2.84□□□□□ -1.95
VPS9D1Q9Y2B5 5S_rRNA.19-201ENST00000612131 110 ntBASIC2.84□□□□□ -1.95
VPS9D1Q9Y2B5 5S_rRNA.18-201ENST00000621941 110 ntBASIC2.84□□□□□ -1.95
VPS9D1Q9Y2B5 MACC1-202ENST00000400331 9159 ntAPPRIS P1 TSL 2 BASIC2.84□□□□□ -1.96
VPS9D1Q9Y2B5 CFH-202ENST00000367429 4127 ntAPPRIS P1 TSL 1 (best) BASIC2.83□□□□□ -1.96
VPS9D1Q9Y2B5 PCDH11Y-203ENST00000362095 4220 ntAPPRIS ALT2 TSL 1 (best) BASIC2.83□□□□□ -1.96
VPS9D1Q9Y2B5 MIR377-201ENST00000362145 69 ntBASIC2.83□□□□□ -1.96
VPS9D1Q9Y2B5 RNU6-369P-201ENST00000362515 102 ntBASIC2.83□□□□□ -1.96
VPS9D1Q9Y2B5 Y_RNA.258-201ENST00000364613 105 ntBASIC2.83□□□□□ -1.96
VPS9D1Q9Y2B5 SNORA44-201ENST00000384584 132 ntBASIC2.83□□□□□ -1.96
VPS9D1Q9Y2B5 RNU6-1184P-201ENST00000384588 108 ntBASIC2.83□□□□□ -1.96
VPS9D1Q9Y2B5 MIR194-1-201ENST00000384892 85 ntBASIC2.83□□□□□ -1.96
VPS9D1Q9Y2B5 RNA5SP492-201ENST00000411330 114 ntBASIC2.83□□□□□ -1.96
VPS9D1Q9Y2B5 AL355388.1-201ENST00000415726 401 ntTSL 2 BASIC2.83□□□□□ -1.96
VPS9D1Q9Y2B5 AC092427.1-202ENST00000430569 476 ntBASIC2.83□□□□□ -1.96
VPS9D1Q9Y2B5 MIR3920-201ENST00000581751 86 ntBASIC2.83□□□□□ -1.96
VPS9D1Q9Y2B5 KCNIP4-IT1-201ENST00000627566 9848 ntBASIC2.83□□□□□ -1.96
VPS9D1Q9Y2B5 FGF14-201ENST00000376131 12882 ntTSL 1 (best) BASIC2.83□□□□□ -1.96
VPS9D1Q9Y2B5 SNORA80A-201ENST00000363922 136 ntBASIC2.82□□□□□ -1.96
Retrieved 100 of 98,524 protein–RNA pairs in 313.5 ms