Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 RNU6-535P-201ENST00000384722 107 ntBASIC0.26□□□□□ -2.37
VPS28Q9UK41 RNA5SP236-201ENST00000516169 116 ntBASIC0.26□□□□□ -2.37
VPS28Q9UK41 RNA5SP268-201ENST00000516828 124 ntBASIC0.26□□□□□ -2.37
VPS28Q9UK41 MIR4503-201ENST00000582187 83 ntBASIC0.26□□□□□ -2.37
VPS28Q9UK41 CLRN1-AS1.1-201ENST00000615643 79 ntBASIC0.26□□□□□ -2.37
VPS28Q9UK41 SNORD115-2-201ENST00000362842 82 ntBASIC0.25□□□□□ -2.37
VPS28Q9UK41 RNU6-818P-201ENST00000364837 108 ntBASIC0.25□□□□□ -2.37
VPS28Q9UK41 SNORD115-20-201ENST00000365099 82 ntBASIC0.25□□□□□ -2.37
VPS28Q9UK41 RNU6-690P-201ENST00000365242 106 ntBASIC0.25□□□□□ -2.37
VPS28Q9UK41 Y_RNA.470-201ENST00000384307 117 ntBASIC0.25□□□□□ -2.37
VPS28Q9UK41 SNORA75.5-201ENST00000391291 81 ntBASIC0.25□□□□□ -2.37
VPS28Q9UK41 RNU6-1194P-201ENST00000516208 104 ntBASIC0.25□□□□□ -2.37
VPS28Q9UK41 RNA5SP33-201ENST00000516687 98 ntBASIC0.25□□□□□ -2.37
VPS28Q9UK41 DEFB131E-201ENST00000532329 154 ntBASIC0.25□□□□□ -2.37
VPS28Q9UK41 AC011603.4-201ENST00000611325 277 ntBASIC0.25□□□□□ -2.37
VPS28Q9UK41 AC078938.1-201ENST00000620993 318 ntBASIC0.25□□□□□ -2.37
VPS28Q9UK41 MTATP6P21-201ENST00000440681 189 ntBASIC0.24□□□□□ -2.37
VPS28Q9UK41 MTND5P34-201ENST00000568888 325 ntBASIC0.24□□□□□ -2.37
VPS28Q9UK41 MIR3149-201ENST00000584629 83 ntBASIC0.24□□□□□ -2.37
VPS28Q9UK41 RNU4-58P-201ENST00000363192 141 ntBASIC0.23□□□□□ -2.37
VPS28Q9UK41 RNU6-1082P-201ENST00000364574 107 ntBASIC0.23□□□□□ -2.37
VPS28Q9UK41 RNU6-47P-201ENST00000383866 107 ntBASIC0.23□□□□□ -2.37
VPS28Q9UK41 RNU2-59P-201ENST00000410482 191 ntBASIC0.23□□□□□ -2.37
VPS28Q9UK41 SCARNA16.5-201ENST00000517114 183 ntBASIC0.23□□□□□ -2.37
VPS28Q9UK41 MIR1273G-201ENST00000577677 100 ntBASIC0.23□□□□□ -2.37
VPS28Q9UK41 MIR5093-201ENST00000583199 100 ntBASIC0.23□□□□□ -2.37
VPS28Q9UK41 Y_RNA.120-201ENST00000363304 110 ntBASIC0.22□□□□□ -2.37
VPS28Q9UK41 Y_RNA.466-201ENST00000384294 113 ntBASIC0.22□□□□□ -2.37
VPS28Q9UK41 AC073261.1-201ENST00000429409 121 ntBASIC0.22□□□□□ -2.37
VPS28Q9UK41 MIR4639-201ENST00000584938 69 ntBASIC0.22□□□□□ -2.37
VPS28Q9UK41 AC009779.6-201ENST00000603972 165 ntBASIC0.22□□□□□ -2.37
VPS28Q9UK41 MIR6828-201ENST00000636181 60 ntBASIC0.22□□□□□ -2.37
VPS28Q9UK41 MIR924-201ENST00000638017 53 ntBASIC0.22□□□□□ -2.37
VPS28Q9UK41 RNA5SP133-201ENST00000363368 119 ntBASIC0.21□□□□□ -2.38
VPS28Q9UK41 Y_RNA.233-201ENST00000364407 101 ntBASIC0.21□□□□□ -2.38
VPS28Q9UK41 SNORA32-201ENST00000384072 121 ntBASIC0.21□□□□□ -2.38
VPS28Q9UK41 MIRLET7F2-201ENST00000385277 83 ntBASIC0.21□□□□□ -2.38
VPS28Q9UK41 RNA5SP227-201ENST00000516184 113 ntBASIC0.21□□□□□ -2.38
VPS28Q9UK41 MIR4514-201ENST00000581410 57 ntBASIC0.21□□□□□ -2.38
VPS28Q9UK41 MIR4305-201ENST00000583252 102 ntBASIC0.21□□□□□ -2.38
VPS28Q9UK41 SUMO1P3-201ENST00000439961 304 ntBASIC0.2□□□□□ -2.38
VPS28Q9UK41 RNU6-531P-201ENST00000516694 104 ntBASIC0.2□□□□□ -2.38
VPS28Q9UK41 RNA5SP47-201ENST00000517230 109 ntBASIC0.2□□□□□ -2.38
VPS28Q9UK41 AC112693.2-201ENST00000556538 232 ntBASIC0.2□□□□□ -2.38
VPS28Q9UK41 MIR3646-201ENST00000578301 84 ntBASIC0.2□□□□□ -2.38
VPS28Q9UK41 HOTAIR_3.1-201ENST00000611352 97 ntBASIC0.2□□□□□ -2.38
VPS28Q9UK41 MIR7107-201ENST00000611489 80 ntBASIC0.2□□□□□ -2.38
VPS28Q9UK41 U6.109-201ENST00000636749 87 ntBASIC0.2□□□□□ -2.38
VPS28Q9UK41 MIR6844-201ENST00000637122 62 ntBASIC0.2□□□□□ -2.38
VPS28Q9UK41 AC091304.10-201ENST00000641554 121 ntBASIC0.2□□□□□ -2.38
VPS28Q9UK41 Y_RNA.205-201ENST00000364128 113 ntBASIC0.19□□□□□ -2.38
VPS28Q9UK41 Y_RNA.357-201ENST00000365487 109 ntBASIC0.19□□□□□ -2.38
VPS28Q9UK41 Y_RNA.531-201ENST00000384589 121 ntBASIC0.19□□□□□ -2.38
VPS28Q9UK41 SNORD28-201ENST00000384706 75 ntBASIC0.19□□□□□ -2.38
VPS28Q9UK41 RNU6-1219P-201ENST00000516143 112 ntBASIC0.19□□□□□ -2.38
VPS28Q9UK41 AC069113.3-201ENST00000521019 150 ntBASIC0.19□□□□□ -2.38
VPS28Q9UK41 MIR548AE2-201ENST00000583456 67 ntBASIC0.19□□□□□ -2.38
VPS28Q9UK41 AC098479.1-201ENST00000609225 154 ntBASIC0.19□□□□□ -2.38
VPS28Q9UK41 MIR4315-1-201ENST00000636800 73 ntBASIC0.19□□□□□ -2.38
VPS28Q9UK41 MIR4315-2-201ENST00000640925 73 ntBASIC0.19□□□□□ -2.38
VPS28Q9UK41 Y_RNA.489-201ENST00000384410 101 ntBASIC0.18□□□□□ -2.38
VPS28Q9UK41 TRAJ1-201ENST00000390536 62 ntAPPRIS P1 BASIC0.18□□□□□ -2.38
VPS28Q9UK41 RNU7-137P-201ENST00000516788 62 ntBASIC0.18□□□□□ -2.38
VPS28Q9UK41 AC138907.4-201ENST00000570107 226 ntBASIC0.18□□□□□ -2.38
VPS28Q9UK41 MIR6779-201ENST00000617283 64 ntBASIC0.18□□□□□ -2.38
VPS28Q9UK41 MIR101-2-201ENST00000362195 79 ntBASIC0.17□□□□□ -2.38
VPS28Q9UK41 RNU6-815P-201ENST00000384080 113 ntBASIC0.17□□□□□ -2.38
VPS28Q9UK41 RNU6-574P-201ENST00000384265 107 ntBASIC0.17□□□□□ -2.38
VPS28Q9UK41 RNU6-463P-201ENST00000384340 107 ntBASIC0.17□□□□□ -2.38
VPS28Q9UK41 Y_RNA.497-201ENST00000384447 98 ntBASIC0.17□□□□□ -2.38
VPS28Q9UK41 RNU6ATAC4P-201ENST00000387446 126 ntBASIC0.17□□□□□ -2.38
VPS28Q9UK41 Y_RNA.793-201ENST00000411222 111 ntBASIC0.17□□□□□ -2.38
VPS28Q9UK41 RNU6-240P-201ENST00000516098 97 ntBASIC0.17□□□□□ -2.38
VPS28Q9UK41 SNORA62.5-201ENST00000516634 120 ntBASIC0.17□□□□□ -2.38
VPS28Q9UK41 AC130289.1-201ENST00000577321 73 ntBASIC0.17□□□□□ -2.38
VPS28Q9UK41 AC021443.1-201ENST00000604478 211 ntBASIC0.17□□□□□ -2.38
VPS28Q9UK41 FAM13A-AS1_1.1-201ENST00000612555 119 ntBASIC0.17□□□□□ -2.38
VPS28Q9UK41 SNORD114-10-201ENST00000363409 72 ntBASIC0.16□□□□□ -2.38
VPS28Q9UK41 RNU6-239P-201ENST00000390990 99 ntBASIC0.16□□□□□ -2.38
VPS28Q9UK41 RNU2-35P-201ENST00000516446 142 ntBASIC0.16□□□□□ -2.38
VPS28Q9UK41 SNORD67.1-201ENST00000516618 108 ntBASIC0.16□□□□□ -2.38
VPS28Q9UK41 IGHVII-40-1-201ENST00000517316 58 ntBASIC0.16□□□□□ -2.38
VPS28Q9UK41 AC072026.1-201ENST00000605023 201 ntBASIC0.16□□□□□ -2.38
VPS28Q9UK41 AC244669.1-204ENST00000621564 178 ntBASIC0.16□□□□□ -2.38
VPS28Q9UK41 MIR330-201ENST00000362196 94 ntBASIC0.15□□□□□ -2.39
VPS28Q9UK41 MIR7-2-201ENST00000384970 110 ntBASIC0.15□□□□□ -2.39
VPS28Q9UK41 AC069271.1-201ENST00000445577 156 ntBASIC0.15□□□□□ -2.39
VPS28Q9UK41 AC040936.1-201ENST00000534543 172 ntTSL 5 BASIC0.15□□□□□ -2.39
VPS28Q9UK41 AC138749.4-201ENST00000563970 127 ntBASIC0.15□□□□□ -2.39
VPS28Q9UK41 AC023932.2-201ENST00000603176 175 ntBASIC0.15□□□□□ -2.39
VPS28Q9UK41 MIR8087-201ENST00000612745 78 ntBASIC0.15□□□□□ -2.39
VPS28Q9UK41 Y_RNA.144-201ENST00000363521 113 ntBASIC0.14□□□□□ -2.39
VPS28Q9UK41 RNU4-67P-201ENST00000364569 141 ntBASIC0.14□□□□□ -2.39
VPS28Q9UK41 SNORD18B-201ENST00000365659 72 ntBASIC0.14□□□□□ -2.39
VPS28Q9UK41 RNU6-588P-201ENST00000410281 105 ntBASIC0.14□□□□□ -2.39
VPS28Q9UK41 RNU7-164P-201ENST00000459221 62 ntBASIC0.14□□□□□ -2.39
VPS28Q9UK41 Y_RNA.274-201ENST00000364714 101 ntBASIC0.13□□□□□ -2.39
VPS28Q9UK41 Y_RNA.299-201ENST00000364973 94 ntBASIC0.13□□□□□ -2.39
VPS28Q9UK41 Y_RNA.366-201ENST00000365540 102 ntBASIC0.13□□□□□ -2.39
VPS28Q9UK41 RNU6-1126P-201ENST00000384002 107 ntBASIC0.13□□□□□ -2.39
Retrieved 100 of 98,524 protein–RNA pairs in 172.7 ms