Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 RNU6-768P-201ENST00000384683 107 ntBASIC0.19□□□□□ -2.38
LHX3Q9UBR4 RNU6-291P-201ENST00000384720 107 ntBASIC0.19□□□□□ -2.38
LHX3Q9UBR4 RNU6-918P-201ENST00000391219 106 ntBASIC0.19□□□□□ -2.38
LHX3Q9UBR4 AC073261.1-201ENST00000429409 121 ntBASIC0.19□□□□□ -2.38
LHX3Q9UBR4 SUMO1P3-201ENST00000439961 304 ntBASIC0.19□□□□□ -2.38
LHX3Q9UBR4 RNU6-863P-201ENST00000515989 104 ntBASIC0.19□□□□□ -2.38
LHX3Q9UBR4 RNA5SP268-201ENST00000516828 124 ntBASIC0.19□□□□□ -2.38
LHX3Q9UBR4 DEFB131E-201ENST00000532329 154 ntBASIC0.19□□□□□ -2.38
LHX3Q9UBR4 U4.1-201ENST00000620349 87 ntBASIC0.19□□□□□ -2.38
LHX3Q9UBR4 AC078938.1-201ENST00000620993 318 ntBASIC0.19□□□□□ -2.38
LHX3Q9UBR4 RNU6-1082P-201ENST00000364574 107 ntBASIC0.18□□□□□ -2.38
LHX3Q9UBR4 SNORA32-201ENST00000384072 121 ntBASIC0.18□□□□□ -2.38
LHX3Q9UBR4 RNU6ATAC4P-201ENST00000387446 126 ntBASIC0.18□□□□□ -2.38
LHX3Q9UBR4 RNA5SP63-201ENST00000391225 112 ntBASIC0.18□□□□□ -2.38
LHX3Q9UBR4 AL022718.1-201ENST00000412004 84 ntBASIC0.18□□□□□ -2.38
LHX3Q9UBR4 RNU6-1023P-201ENST00000516137 106 ntBASIC0.18□□□□□ -2.38
LHX3Q9UBR4 RNA5SP33-201ENST00000516687 98 ntBASIC0.18□□□□□ -2.38
LHX3Q9UBR4 MIR4431-201ENST00000579990 94 ntBASIC0.18□□□□□ -2.38
LHX3Q9UBR4 RNU6-1099P-201ENST00000363533 107 ntBASIC0.17□□□□□ -2.38
LHX3Q9UBR4 Y_RNA.307-201ENST00000365022 117 ntBASIC0.17□□□□□ -2.38
LHX3Q9UBR4 RNU6-47P-201ENST00000383866 107 ntBASIC0.17□□□□□ -2.38
LHX3Q9UBR4 RNU6-815P-201ENST00000384080 113 ntBASIC0.17□□□□□ -2.38
LHX3Q9UBR4 Y_RNA.447-201ENST00000384184 113 ntBASIC0.17□□□□□ -2.38
LHX3Q9UBR4 RNU6-531P-201ENST00000516694 104 ntBASIC0.17□□□□□ -2.38
LHX3Q9UBR4 RNU7-35P-201ENST00000517174 62 ntBASIC0.17□□□□□ -2.38
LHX3Q9UBR4 HOTAIRM1_4.1-201ENST00000617934 102 ntBASIC0.17□□□□□ -2.38
LHX3Q9UBR4 RNA5SP257-201ENST00000363023 116 ntBASIC0.16□□□□□ -2.38
LHX3Q9UBR4 RNA5SP133-201ENST00000363368 119 ntBASIC0.16□□□□□ -2.38
LHX3Q9UBR4 RNU6-1229P-201ENST00000364295 107 ntBASIC0.16□□□□□ -2.38
LHX3Q9UBR4 RNU4-67P-201ENST00000364569 141 ntBASIC0.16□□□□□ -2.38
LHX3Q9UBR4 RNU6-690P-201ENST00000365242 106 ntBASIC0.16□□□□□ -2.38
LHX3Q9UBR4 RNU6-574P-201ENST00000384265 107 ntBASIC0.16□□□□□ -2.38
LHX3Q9UBR4 Y_RNA.476-201ENST00000384347 108 ntBASIC0.16□□□□□ -2.38
LHX3Q9UBR4 RNU2-59P-201ENST00000410482 191 ntBASIC0.16□□□□□ -2.38
LHX3Q9UBR4 AC069271.1-201ENST00000445577 156 ntBASIC0.16□□□□□ -2.38
LHX3Q9UBR4 RNA5SP236-201ENST00000516169 116 ntBASIC0.16□□□□□ -2.38
LHX3Q9UBR4 RNA5SP227-201ENST00000516184 113 ntBASIC0.16□□□□□ -2.38
LHX3Q9UBR4 RNU6-1194P-201ENST00000516208 104 ntBASIC0.16□□□□□ -2.38
LHX3Q9UBR4 RNU6-135P-201ENST00000516769 101 ntBASIC0.16□□□□□ -2.38
LHX3Q9UBR4 MIR4503-201ENST00000582187 83 ntBASIC0.16□□□□□ -2.38
LHX3Q9UBR4 MIR7107-201ENST00000611489 80 ntBASIC0.16□□□□□ -2.38
LHX3Q9UBR4 MIR411-201ENST00000362239 96 ntBASIC0.15□□□□□ -2.39
LHX3Q9UBR4 Y_RNA.83-201ENST00000363005 113 ntBASIC0.15□□□□□ -2.39
LHX3Q9UBR4 Y_RNA.120-201ENST00000363304 110 ntBASIC0.15□□□□□ -2.39
LHX3Q9UBR4 Y_RNA.200-201ENST00000364018 102 ntBASIC0.15□□□□□ -2.39
LHX3Q9UBR4 RNU6-702P-201ENST00000364982 107 ntBASIC0.15□□□□□ -2.39
LHX3Q9UBR4 MTND3P2-201ENST00000438452 342 ntBASIC0.15□□□□□ -2.39
LHX3Q9UBR4 MIR6718-201ENST00000616153 80 ntBASIC0.15□□□□□ -2.39
LHX3Q9UBR4 U6.109-201ENST00000636749 87 ntBASIC0.15□□□□□ -2.39
LHX3Q9UBR4 RNU6-818P-201ENST00000364837 108 ntBASIC0.14□□□□□ -2.39
LHX3Q9UBR4 RNU6-196P-201ENST00000384315 107 ntBASIC0.14□□□□□ -2.39
LHX3Q9UBR4 SNORD28-201ENST00000384706 75 ntBASIC0.14□□□□□ -2.39
LHX3Q9UBR4 RNU6-1219P-201ENST00000516143 112 ntBASIC0.14□□□□□ -2.39
LHX3Q9UBR4 SCARNA16.5-201ENST00000517114 183 ntBASIC0.14□□□□□ -2.39
LHX3Q9UBR4 RNA5SP47-201ENST00000517230 109 ntBASIC0.14□□□□□ -2.39
LHX3Q9UBR4 AC069113.3-201ENST00000521019 150 ntBASIC0.14□□□□□ -2.39
LHX3Q9UBR4 Y_RNA.30-201ENST00000362572 97 ntBASIC0.13□□□□□ -2.39
LHX3Q9UBR4 RNU4-58P-201ENST00000363192 141 ntBASIC0.13□□□□□ -2.39
LHX3Q9UBR4 RNU6-1020P-201ENST00000363684 107 ntBASIC0.13□□□□□ -2.39
LHX3Q9UBR4 RNA5SP245-201ENST00000364239 121 ntBASIC0.13□□□□□ -2.39
LHX3Q9UBR4 Y_RNA.374-201ENST00000365606 101 ntBASIC0.13□□□□□ -2.39
LHX3Q9UBR4 TRAJ1-201ENST00000390536 62 ntAPPRIS P1 BASIC0.13□□□□□ -2.39
LHX3Q9UBR4 AC107027.2-201ENST00000512197 115 ntBASIC0.13□□□□□ -2.39
LHX3Q9UBR4 RNU2-35P-201ENST00000516446 142 ntBASIC0.13□□□□□ -2.39
LHX3Q9UBR4 AC022559.1-201ENST00000520905 205 ntBASIC0.13□□□□□ -2.39
LHX3Q9UBR4 AC112693.2-201ENST00000556538 232 ntBASIC0.13□□□□□ -2.39
LHX3Q9UBR4 MIR4305-201ENST00000583252 102 ntBASIC0.13□□□□□ -2.39
LHX3Q9UBR4 MIR548AE2-201ENST00000583456 67 ntBASIC0.13□□□□□ -2.39
LHX3Q9UBR4 MIR4315-1-201ENST00000636800 73 ntBASIC0.13□□□□□ -2.39
LHX3Q9UBR4 MIR4315-2-201ENST00000640925 73 ntBASIC0.13□□□□□ -2.39
LHX3Q9UBR4 SNORD115-2-201ENST00000362842 82 ntBASIC0.12□□□□□ -2.39
LHX3Q9UBR4 SNORA63.5-201ENST00000363548 123 ntBASIC0.12□□□□□ -2.39
LHX3Q9UBR4 Y_RNA.193-201ENST00000363979 102 ntBASIC0.12□□□□□ -2.39
LHX3Q9UBR4 SNORD115-20-201ENST00000365099 82 ntBASIC0.12□□□□□ -2.39
LHX3Q9UBR4 Y_RNA.423-201ENST00000384057 113 ntBASIC0.12□□□□□ -2.39
LHX3Q9UBR4 Y_RNA.435-201ENST00000384095 112 ntBASIC0.12□□□□□ -2.39
LHX3Q9UBR4 MIR1295A-201ENST00000408463 79 ntBASIC0.12□□□□□ -2.39
LHX3Q9UBR4 Y_RNA.793-201ENST00000411222 111 ntBASIC0.12□□□□□ -2.39
LHX3Q9UBR4 RNU6-240P-201ENST00000516098 97 ntBASIC0.12□□□□□ -2.39
LHX3Q9UBR4 SNORD67.1-201ENST00000516618 108 ntBASIC0.12□□□□□ -2.39
LHX3Q9UBR4 MIR4639-201ENST00000584938 69 ntBASIC0.12□□□□□ -2.39
LHX3Q9UBR4 FAM13A-AS1_1.1-201ENST00000612555 119 ntBASIC0.12□□□□□ -2.39
LHX3Q9UBR4 AC105081.1-201ENST00000617727 106 ntBASIC0.12□□□□□ -2.39
LHX3Q9UBR4 AC244669.1-204ENST00000621564 178 ntBASIC0.12□□□□□ -2.39
LHX3Q9UBR4 MIR6828-201ENST00000636181 60 ntBASIC0.12□□□□□ -2.39
LHX3Q9UBR4 MIR6844-201ENST00000637122 62 ntBASIC0.12□□□□□ -2.39
LHX3Q9UBR4 MIR101-2-201ENST00000362195 79 ntBASIC0.11□□□□□ -2.39
LHX3Q9UBR4 Y_RNA.337-201ENST00000365312 102 ntBASIC0.11□□□□□ -2.39
LHX3Q9UBR4 RNU6-187P-201ENST00000384139 106 ntBASIC0.11□□□□□ -2.39
LHX3Q9UBR4 Y_RNA.497-201ENST00000384447 98 ntBASIC0.11□□□□□ -2.39
LHX3Q9UBR4 Y_RNA.531-201ENST00000384589 121 ntBASIC0.11□□□□□ -2.39
LHX3Q9UBR4 RNA5SP299-201ENST00000391203 116 ntBASIC0.11□□□□□ -2.39
LHX3Q9UBR4 RNU6-588P-201ENST00000410281 105 ntBASIC0.11□□□□□ -2.39
LHX3Q9UBR4 RNU7-137P-201ENST00000516788 62 ntBASIC0.11□□□□□ -2.39
LHX3Q9UBR4 AC138749.4-201ENST00000563970 127 ntBASIC0.11□□□□□ -2.39
LHX3Q9UBR4 MIR3149-201ENST00000584629 83 ntBASIC0.11□□□□□ -2.39
LHX3Q9UBR4 AL359881.1-201ENST00000602916 267 ntBASIC0.11□□□□□ -2.39
LHX3Q9UBR4 MIR6755-201ENST00000619993 66 ntBASIC0.11□□□□□ -2.39
LHX3Q9UBR4 AC091304.10-201ENST00000641554 121 ntBASIC0.11□□□□□ -2.39
LHX3Q9UBR4 RNU6-312P-201ENST00000364629 107 ntBASIC0.1□□□□□ -2.39
Retrieved 100 of 98,524 protein–RNA pairs in 218.8 ms