Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 RNY4P30-201ENST00000410216 95 ntBASIC1.55□□□□□ -2.16
CCDC140Q96MF4 SPINT5P-201ENST00000448174 155 ntBASIC1.55□□□□□ -2.16
CCDC140Q96MF4 snoU13.23-201ENST00000458863 104 ntBASIC1.55□□□□□ -2.16
CCDC140Q96MF4 MIR4500-201ENST00000579472 76 ntBASIC1.55□□□□□ -2.16
CCDC140Q96MF4 AP000553.5-201ENST00000641933 54 ntBASIC1.55□□□□□ -2.16
CCDC140Q96MF4 KIAA1107-201ENST00000370378 4622 ntTSL 5 BASIC1.55□□□□□ -2.16
CCDC140Q96MF4 TFEC-204ENST00000457268 6309 ntTSL 3 BASIC1.55□□□□□ -2.16
CCDC140Q96MF4 TEX15-203ENST00000638951 11341 ntAPPRIS P1 TSL 5 BASIC1.55□□□□□ -2.16
CCDC140Q96MF4 ATP13A3-201ENST00000256031 7322 ntAPPRIS P1 TSL 5 BASIC1.54□□□□□ -2.16
CCDC140Q96MF4 RNU6-403P-201ENST00000363163 104 ntBASIC1.54□□□□□ -2.16
CCDC140Q96MF4 RNA5SP133-201ENST00000363368 119 ntBASIC1.54□□□□□ -2.16
CCDC140Q96MF4 RNA5SP138-201ENST00000365098 114 ntBASIC1.54□□□□□ -2.16
CCDC140Q96MF4 Y_RNA.348-201ENST00000365403 103 ntBASIC1.54□□□□□ -2.16
CCDC140Q96MF4 SNORD111-201ENST00000408139 94 ntBASIC1.54□□□□□ -2.16
CCDC140Q96MF4 RNU6ATAC41P-201ENST00000408600 126 ntBASIC1.54□□□□□ -2.16
CCDC140Q96MF4 AL591806.2-201ENST00000433122 173 ntBASIC1.54□□□□□ -2.16
CCDC140Q96MF4 RNU6-970P-201ENST00000516312 107 ntBASIC1.54□□□□□ -2.16
CCDC140Q96MF4 AC015712.3-201ENST00000559380 164 ntBASIC1.54□□□□□ -2.16
CCDC140Q96MF4 MTND5P40-201ENST00000559945 246 ntBASIC1.54□□□□□ -2.16
CCDC140Q96MF4 MIR4771-2-201ENST00000577758 74 ntBASIC1.54□□□□□ -2.16
CCDC140Q96MF4 MIR5089-201ENST00000580047 84 ntBASIC1.54□□□□□ -2.16
CCDC140Q96MF4 MIR4771-1-201ENST00000582617 74 ntBASIC1.54□□□□□ -2.16
CCDC140Q96MF4 MIR548Z-201ENST00000584743 97 ntBASIC1.54□□□□□ -2.16
CCDC140Q96MF4 AC106800.4-201ENST00000614905 153 ntBASIC1.54□□□□□ -2.16
CCDC140Q96MF4 AC012531.4-201ENST00000616509 177 ntBASIC1.54□□□□□ -2.16
CCDC140Q96MF4 Y_RNA.818-201ENST00000618813 71 ntBASIC1.54□□□□□ -2.16
CCDC140Q96MF4 AP001362.1-201ENST00000625165 124 ntBASIC1.54□□□□□ -2.16
CCDC140Q96MF4 AC091304.10-201ENST00000641554 121 ntBASIC1.54□□□□□ -2.16
CCDC140Q96MF4 Y_RNA.377-201ENST00000365644 108 ntBASIC1.53□□□□□ -2.16
CCDC140Q96MF4 SNORA72.6-201ENST00000384520 129 ntBASIC1.53□□□□□ -2.16
CCDC140Q96MF4 RNU6-994P-201ENST00000410507 111 ntBASIC1.53□□□□□ -2.16
CCDC140Q96MF4 RNU7-185P-201ENST00000459215 60 ntBASIC1.53□□□□□ -2.16
CCDC140Q96MF4 AC108210.2-201ENST00000503681 201 ntBASIC1.53□□□□□ -2.16
CCDC140Q96MF4 AC138749.4-201ENST00000563970 127 ntBASIC1.53□□□□□ -2.16
CCDC140Q96MF4 MIR4448-201ENST00000584360 86 ntBASIC1.53□□□□□ -2.16
CCDC140Q96MF4 5S_rRNA.15-201ENST00000611169 127 ntBASIC1.53□□□□□ -2.16
CCDC140Q96MF4 Y_RNA.119-201ENST00000363301 96 ntBASIC1.52□□□□□ -2.17
CCDC140Q96MF4 SNORD38.1-201ENST00000363863 68 ntBASIC1.52□□□□□ -2.17
CCDC140Q96MF4 SNORD45B-201ENST00000364617 72 ntBASIC1.52□□□□□ -2.17
CCDC140Q96MF4 RNY1P2-201ENST00000364820 117 ntBASIC1.52□□□□□ -2.17
CCDC140Q96MF4 RNU1-36P-201ENST00000365130 165 ntBASIC1.52□□□□□ -2.17
CCDC140Q96MF4 RNU6ATAC38P-201ENST00000408119 126 ntBASIC1.52□□□□□ -2.17
CCDC140Q96MF4 TTTY16-201ENST00000437686 192 ntTSL 1 (best) BASIC1.52□□□□□ -2.17
CCDC140Q96MF4 AC109327.2-201ENST00000448339 378 ntBASIC1.52□□□□□ -2.17
CCDC140Q96MF4 MIR4491-201ENST00000581087 68 ntBASIC1.52□□□□□ -2.17
CCDC140Q96MF4 OXR1-209ENST00000517566 4501 ntTSL 1 (best) BASIC1.51□□□□□ -2.17
CCDC140Q96MF4 RNU6-170P-201ENST00000362832 104 ntBASIC1.51□□□□□ -2.17
CCDC140Q96MF4 Y_RNA.107-201ENST00000363190 121 ntBASIC1.51□□□□□ -2.17
CCDC140Q96MF4 RNU6-905P-201ENST00000384434 107 ntBASIC1.51□□□□□ -2.17
CCDC140Q96MF4 TRAJ49-201ENST00000390488 56 ntAPPRIS P1 BASIC1.51□□□□□ -2.17
CCDC140Q96MF4 MIR1257-201ENST00000408490 117 ntBASIC1.51□□□□□ -2.17
CCDC140Q96MF4 AC096949.1-201ENST00000412047 152 ntBASIC1.51□□□□□ -2.17
CCDC140Q96MF4 AL445685.2-201ENST00000422551 342 ntBASIC1.51□□□□□ -2.17
CCDC140Q96MF4 MTATP8P2-201ENST00000435212 202 ntBASIC1.51□□□□□ -2.17
CCDC140Q96MF4 RNU1-98P-201ENST00000458992 160 ntBASIC1.51□□□□□ -2.17
CCDC140Q96MF4 RNU6-1006P-201ENST00000516998 103 ntBASIC1.51□□□□□ -2.17
CCDC140Q96MF4 RNA5SP170-201ENST00000517150 101 ntBASIC1.51□□□□□ -2.17
CCDC140Q96MF4 AC090897.1-201ENST00000580909 226 ntBASIC1.51□□□□□ -2.17
CCDC140Q96MF4 RNU6-90P-201ENST00000606352 106 ntBASIC1.51□□□□□ -2.17
CCDC140Q96MF4 PI15-201ENST00000260113 6732 ntAPPRIS P1 TSL 1 (best) BASIC1.51□□□□□ -2.17
CCDC140Q96MF4 NPAT-201ENST00000278612 6117 ntAPPRIS P2 TSL 1 (best) BASIC1.5□□□□□ -2.17
CCDC140Q96MF4 CALCRL-201ENST00000392370 5155 ntAPPRIS P1 TSL 1 (best) BASIC1.5□□□□□ -2.17
CCDC140Q96MF4 RNU6-1298P-201ENST00000362456 101 ntBASIC1.5□□□□□ -2.17
CCDC140Q96MF4 Y_RNA.93-201ENST00000363066 109 ntBASIC1.5□□□□□ -2.17
CCDC140Q96MF4 SNORA25-201ENST00000384384 134 ntBASIC1.5□□□□□ -2.17
CCDC140Q96MF4 SNORD38.2-201ENST00000384470 69 ntBASIC1.5□□□□□ -2.17
CCDC140Q96MF4 RPS29P11-201ENST00000496507 171 ntBASIC1.5□□□□□ -2.17
CCDC140Q96MF4 RNU7-40P-201ENST00000516397 64 ntBASIC1.5□□□□□ -2.17
CCDC140Q96MF4 SNORA25.16-201ENST00000516741 121 ntBASIC1.5□□□□□ -2.17
CCDC140Q96MF4 RNU6-86P-201ENST00000606534 107 ntBASIC1.5□□□□□ -2.17
CCDC140Q96MF4 C16orf97-206ENST00000622950 415 ntTSL 2 BASIC1.5□□□□□ -2.17
CCDC140Q96MF4 hsa-mir-3158-1.1-201ENST00000637571 81 ntBASIC1.5□□□□□ -2.17
CCDC140Q96MF4 ZNF355P-201ENST00000427301 3216 ntBASIC1.5□□□□□ -2.17
CCDC140Q96MF4 Y_RNA.140-201ENST00000363474 103 ntBASIC1.49□□□□□ -2.17
CCDC140Q96MF4 RNU6-640P-201ENST00000363693 105 ntBASIC1.49□□□□□ -2.17
CCDC140Q96MF4 Y_RNA.467-201ENST00000384297 102 ntBASIC1.49□□□□□ -2.17
CCDC140Q96MF4 RNU6-644P-201ENST00000391155 98 ntBASIC1.49□□□□□ -2.17
CCDC140Q96MF4 MIR548G-201ENST00000408442 89 ntBASIC1.49□□□□□ -2.17
CCDC140Q96MF4 RNU4-83P-201ENST00000410863 133 ntBASIC1.49□□□□□ -2.17
CCDC140Q96MF4 AC002429.1-201ENST00000437672 148 ntBASIC1.49□□□□□ -2.17
CCDC140Q96MF4 RNU6-531P-201ENST00000516694 104 ntBASIC1.49□□□□□ -2.17
CCDC140Q96MF4 MIR4777-201ENST00000583710 86 ntBASIC1.49□□□□□ -2.17
CCDC140Q96MF4 AC020891.4-201ENST00000605745 93 ntBASIC1.49□□□□□ -2.17
CCDC140Q96MF4 ZNF260-203ENST00000588993 4174 ntAPPRIS P1 TSL 1 (best) BASIC1.48□□□□□ -2.17
CCDC140Q96MF4 Y_RNA.95-201ENST00000363079 95 ntBASIC1.48□□□□□ -2.17
CCDC140Q96MF4 RNU6-60P-201ENST00000364792 103 ntBASIC1.48□□□□□ -2.17
CCDC140Q96MF4 TRAJ1-201ENST00000390536 62 ntAPPRIS P1 BASIC1.48□□□□□ -2.17
CCDC140Q96MF4 RNU6-482P-201ENST00000391068 107 ntBASIC1.48□□□□□ -2.17
CCDC140Q96MF4 Y_RNA.588-201ENST00000391254 102 ntBASIC1.48□□□□□ -2.17
CCDC140Q96MF4 RPS26P5-201ENST00000418544 335 ntBASIC1.48□□□□□ -2.17
CCDC140Q96MF4 RNU7-61P-201ENST00000515897 61 ntBASIC1.48□□□□□ -2.17
CCDC140Q96MF4 MIR4781-201ENST00000585250 76 ntBASIC1.48□□□□□ -2.17
CCDC140Q96MF4 MIR2052-201ENST00000636055 55 ntBASIC1.48□□□□□ -2.17
CCDC140Q96MF4 RPS27-201ENST00000368567 350 ntAPPRIS P1 TSL 1 (best) BASIC1.47□□□□□ -2.17
CCDC140Q96MF4 MIR764-201ENST00000390811 85 ntBASIC1.47□□□□□ -2.17
CCDC140Q96MF4 AC004941.2-201ENST00000427009 228 ntBASIC1.47□□□□□ -2.17
CCDC140Q96MF4 RNU6-162P-201ENST00000516228 103 ntBASIC1.47□□□□□ -2.17
CCDC140Q96MF4 Y_RNA.694-201ENST00000516677 117 ntBASIC1.47□□□□□ -2.17
CCDC140Q96MF4 uc_338.20-201ENST00000621563 178 ntBASIC1.47□□□□□ -2.17
CCDC140Q96MF4 RNU6-1163P-201ENST00000364516 107 ntBASIC1.46□□□□□ -2.18
Retrieved 100 of 98,524 protein–RNA pairs in 126.1 ms