Protein–RNA interactions for Protein: Q7Z6J8

UBE3D, E3 ubiquitin-protein ligase E3D, humanhuman

Predictions only

Length 389 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3DQ7Z6J8 SI-201ENST00000264382 6011 ntAPPRIS P1 TSL 1 (best) BASIC1.93□□□□□ -2.1
UBE3DQ7Z6J8 RNA5SP133-201ENST00000363368 119 ntBASIC1.93□□□□□ -2.1
UBE3DQ7Z6J8 RNA5SP338-201ENST00000410495 85 ntBASIC1.93□□□□□ -2.1
UBE3DQ7Z6J8 Y_RNA.609-201ENST00000410669 89 ntBASIC1.93□□□□□ -2.1
UBE3DQ7Z6J8 AC025033.1-201ENST00000463883 194 ntBASIC1.93□□□□□ -2.1
UBE3DQ7Z6J8 RNU1-41P-201ENST00000516161 162 ntBASIC1.93□□□□□ -2.1
UBE3DQ7Z6J8 RNU1-48P-201ENST00000516400 162 ntBASIC1.93□□□□□ -2.1
UBE3DQ7Z6J8 RNU6-267P-201ENST00000516714 103 ntBASIC1.93□□□□□ -2.1
UBE3DQ7Z6J8 AC138749.4-201ENST00000563970 127 ntBASIC1.93□□□□□ -2.1
UBE3DQ7Z6J8 MIR3198-2-201ENST00000577868 80 ntBASIC1.93□□□□□ -2.1
UBE3DQ7Z6J8 MIR8066-201ENST00000617280 78 ntBASIC1.93□□□□□ -2.1
UBE3DQ7Z6J8 AP000553.5-201ENST00000641933 54 ntBASIC1.93□□□□□ -2.1
UBE3DQ7Z6J8 MIR103A2-201ENST00000362154 78 ntBASIC1.92□□□□□ -2.1
UBE3DQ7Z6J8 RNA5SP264-201ENST00000363115 107 ntBASIC1.92□□□□□ -2.1
UBE3DQ7Z6J8 MIR181B2-201ENST00000385004 89 ntBASIC1.92□□□□□ -2.1
UBE3DQ7Z6J8 TRAJ1-201ENST00000390536 62 ntAPPRIS P1 BASIC1.92□□□□□ -2.1
UBE3DQ7Z6J8 RNU6-717P-201ENST00000459076 104 ntBASIC1.92□□□□□ -2.1
UBE3DQ7Z6J8 RNA5SP395-201ENST00000516567 118 ntBASIC1.92□□□□□ -2.1
UBE3DQ7Z6J8 SNRPGP19-201ENST00000603826 189 ntBASIC1.92□□□□□ -2.1
UBE3DQ7Z6J8 MIR8063-201ENST00000621930 81 ntBASIC1.92□□□□□ -2.1
UBE3DQ7Z6J8 SNORA25.3-201ENST00000363205 127 ntBASIC1.91□□□□□ -2.1
UBE3DQ7Z6J8 RNU6-580P-201ENST00000365159 107 ntBASIC1.91□□□□□ -2.1
UBE3DQ7Z6J8 Y_RNA.607-201ENST00000410597 98 ntBASIC1.91□□□□□ -2.1
UBE3DQ7Z6J8 MIR18B-201ENST00000454574 71 ntBASIC1.91□□□□□ -2.1
UBE3DQ7Z6J8 AC079140.2-201ENST00000506193 142 ntBASIC1.91□□□□□ -2.1
UBE3DQ7Z6J8 AC090897.1-201ENST00000580909 226 ntBASIC1.91□□□□□ -2.1
UBE3DQ7Z6J8 MIR6516-201ENST00000630554 81 ntBASIC1.91□□□□□ -2.1
UBE3DQ7Z6J8 Y_RNA.4-201ENST00000362333 112 ntBASIC1.9□□□□□ -2.11
UBE3DQ7Z6J8 MIR1185-1-201ENST00000408598 86 ntBASIC1.9□□□□□ -2.11
UBE3DQ7Z6J8 snoU13.25-201ENST00000458945 104 ntBASIC1.9□□□□□ -2.11
UBE3DQ7Z6J8 RNU6-947P-201ENST00000516264 106 ntBASIC1.9□□□□□ -2.11
UBE3DQ7Z6J8 AC024382.1-201ENST00000520224 292 ntTSL 3 BASIC1.9□□□□□ -2.11
UBE3DQ7Z6J8 MIR4648-201ENST00000580107 72 ntBASIC1.9□□□□□ -2.11
UBE3DQ7Z6J8 AL512598.1-201ENST00000610158 273 ntBASIC1.9□□□□□ -2.11
UBE3DQ7Z6J8 AL627230.6-201ENST00000611129 280 ntBASIC1.9□□□□□ -2.11
UBE3DQ7Z6J8 MIR548BB-201ENST00000626714 66 ntBASIC1.9□□□□□ -2.11
UBE3DQ7Z6J8 AC006160.2-201ENST00000637708 154 ntBASIC1.9□□□□□ -2.11
UBE3DQ7Z6J8 PTPRQ-208ENST00000614701 8289 ntAPPRIS P1 TSL 5 BASIC1.89□□□□□ -2.11
UBE3DQ7Z6J8 SNORD1A-201ENST00000364968 72 ntBASIC1.89□□□□□ -2.11
UBE3DQ7Z6J8 RNU6-53P-201ENST00000365367 106 ntBASIC1.89□□□□□ -2.11
UBE3DQ7Z6J8 RNU6-279P-201ENST00000391297 101 ntBASIC1.89□□□□□ -2.11
UBE3DQ7Z6J8 Y_RNA.611-201ENST00000410682 108 ntBASIC1.89□□□□□ -2.11
UBE3DQ7Z6J8 RNU1-40P-201ENST00000516816 164 ntBASIC1.89□□□□□ -2.11
UBE3DQ7Z6J8 RNU1-97P-201ENST00000516872 164 ntBASIC1.89□□□□□ -2.11
UBE3DQ7Z6J8 MIR4448-201ENST00000584360 86 ntBASIC1.89□□□□□ -2.11
UBE3DQ7Z6J8 CYP19A1-220ENST00000613097 123 ntTSL 5 BASIC1.89□□□□□ -2.11
UBE3DQ7Z6J8 U6.109-201ENST00000636749 87 ntBASIC1.89□□□□□ -2.11
UBE3DQ7Z6J8 THOC2-216ENST00000491737 4452 ntTSL 5 BASIC1.89□□□□□ -2.11
UBE3DQ7Z6J8 U8.2-201ENST00000363156 134 ntBASIC1.88□□□□□ -2.11
UBE3DQ7Z6J8 AL365434.1-201ENST00000412362 380 ntTSL 3 BASIC1.88□□□□□ -2.11
UBE3DQ7Z6J8 HMGN2P23-201ENST00000456759 269 ntBASIC1.88□□□□□ -2.11
UBE3DQ7Z6J8 Y_RNA.57-201ENST00000362806 113 ntBASIC1.87□□□□□ -2.11
UBE3DQ7Z6J8 Y_RNA.119-201ENST00000363301 96 ntBASIC1.87□□□□□ -2.11
UBE3DQ7Z6J8 RNU6-787P-201ENST00000384032 107 ntBASIC1.87□□□□□ -2.11
UBE3DQ7Z6J8 SNORA70B-201ENST00000384210 135 ntBASIC1.87□□□□□ -2.11
UBE3DQ7Z6J8 MIR519C-201ENST00000385053 87 ntBASIC1.87□□□□□ -2.11
UBE3DQ7Z6J8 RNU6-205P-201ENST00000390858 107 ntBASIC1.87□□□□□ -2.11
UBE3DQ7Z6J8 MIR1255A-201ENST00000408338 113 ntBASIC1.87□□□□□ -2.11
UBE3DQ7Z6J8 RNU6-519P-201ENST00000410590 108 ntBASIC1.87□□□□□ -2.11
UBE3DQ7Z6J8 TTTY16-201ENST00000437686 192 ntTSL 1 (best) BASIC1.87□□□□□ -2.11
UBE3DQ7Z6J8 RNU6-1194P-201ENST00000516208 104 ntBASIC1.87□□□□□ -2.11
UBE3DQ7Z6J8 MIR514B-201ENST00000516774 80 ntBASIC1.87□□□□□ -2.11
UBE3DQ7Z6J8 MIR4500-201ENST00000579472 76 ntBASIC1.87□□□□□ -2.11
UBE3DQ7Z6J8 ZNRD1-AS1_1.6-201ENST00000610339 68 ntBASIC1.87□□□□□ -2.11
UBE3DQ7Z6J8 ZNF355P-201ENST00000427301 3216 ntBASIC1.87□□□□□ -2.11
UBE3DQ7Z6J8 SCN7A-201ENST00000409855 7183 ntAPPRIS P1 TSL 1 (best) BASIC1.86□□□□□ -2.11
UBE3DQ7Z6J8 AC035139.1-201ENST00000423256 273 ntTSL 3 BASIC1.86□□□□□ -2.11
UBE3DQ7Z6J8 RNU6-850P-201ENST00000516934 103 ntBASIC1.86□□□□□ -2.11
UBE3DQ7Z6J8 MIR3664-201ENST00000579074 99 ntBASIC1.86□□□□□ -2.11
UBE3DQ7Z6J8 AP001109.1-201ENST00000587114 279 ntTSL 3 BASIC1.86□□□□□ -2.11
UBE3DQ7Z6J8 RNU4-58P-201ENST00000363192 141 ntBASIC1.85□□□□□ -2.11
UBE3DQ7Z6J8 Y_RNA.437-201ENST00000384113 113 ntBASIC1.85□□□□□ -2.11
UBE3DQ7Z6J8 AL356379.1-201ENST00000414105 126 ntBASIC1.85□□□□□ -2.11
UBE3DQ7Z6J8 AC245517.4-201ENST00000448601 281 ntBASIC1.85□□□□□ -2.11
UBE3DQ7Z6J8 Y_RNA.648-201ENST00000459455 110 ntBASIC1.85□□□□□ -2.11
UBE3DQ7Z6J8 MIR3937-201ENST00000580135 106 ntBASIC1.85□□□□□ -2.11
UBE3DQ7Z6J8 uc_338.20-201ENST00000621563 178 ntBASIC1.85□□□□□ -2.11
UBE3DQ7Z6J8 SNORD115-37-201ENST00000363768 82 ntBASIC1.84□□□□□ -2.11
UBE3DQ7Z6J8 TRAJ11-201ENST00000390526 60 ntAPPRIS P1 BASIC1.84□□□□□ -2.11
UBE3DQ7Z6J8 RNU6-1054P-201ENST00000411293 104 ntBASIC1.84□□□□□ -2.11
UBE3DQ7Z6J8 ATP6V0E1P3-201ENST00000420036 246 ntBASIC1.84□□□□□ -2.11
UBE3DQ7Z6J8 AC005908.1-201ENST00000468701 347 ntBASIC1.84□□□□□ -2.11
UBE3DQ7Z6J8 AC020891.4-201ENST00000605745 93 ntBASIC1.84□□□□□ -2.11
UBE3DQ7Z6J8 ANGPTL3-201ENST00000371129 2805 ntAPPRIS P1 TSL 1 (best) BASIC1.84□□□□□ -2.12
UBE3DQ7Z6J8 OXR1-209ENST00000517566 4501 ntTSL 1 (best) BASIC1.83□□□□□ -2.12
UBE3DQ7Z6J8 Y_RNA.191-201ENST00000363972 113 ntBASIC1.83□□□□□ -2.12
UBE3DQ7Z6J8 RNU6ATAC38P-201ENST00000408119 126 ntBASIC1.83□□□□□ -2.12
UBE3DQ7Z6J8 AC093729.1-201ENST00000513074 128 ntBASIC1.83□□□□□ -2.12
UBE3DQ7Z6J8 RNA5SP364-201ENST00000516938 78 ntBASIC1.83□□□□□ -2.12
UBE3DQ7Z6J8 TBL1XR1-208ENST00000430069 7948 ntAPPRIS P1 TSL 1 (best) BASIC1.82□□□□□ -2.12
UBE3DQ7Z6J8 SYT14-201ENST00000367015 5094 ntAPPRIS ALT2 TSL 1 (best) BASIC1.82□□□□□ -2.12
UBE3DQ7Z6J8 RNU6ATAC3P-201ENST00000387974 126 ntBASIC1.82□□□□□ -2.12
UBE3DQ7Z6J8 MIR1236-201ENST00000408340 102 ntBASIC1.82□□□□□ -2.12
UBE3DQ7Z6J8 RNA5SP225-201ENST00000410874 135 ntBASIC1.82□□□□□ -2.12
UBE3DQ7Z6J8 AL512310.8-201ENST00000550183 120 ntBASIC1.82□□□□□ -2.12
UBE3DQ7Z6J8 MIR3945-201ENST00000581853 98 ntBASIC1.82□□□□□ -2.12
UBE3DQ7Z6J8 MIR4422-201ENST00000581938 83 ntBASIC1.82□□□□□ -2.12
UBE3DQ7Z6J8 AL096840.1-201ENST00000603287 93 ntBASIC1.82□□□□□ -2.12
UBE3DQ7Z6J8 C16orf97-206ENST00000622950 415 ntTSL 2 BASIC1.82□□□□□ -2.12
UBE3DQ7Z6J8 hsa-mir-3158-1.1-201ENST00000637571 81 ntBASIC1.82□□□□□ -2.12
Retrieved 100 of 98,524 protein–RNA pairs in 187.6 ms