Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 AC003989.2-201ENST00000440224 169 ntBASIC1.88□□□□□ -2.11
LIG3P49916 RNU6-795P-201ENST00000516323 103 ntBASIC1.88□□□□□ -2.11
LIG3P49916 SNORD48-201ENST00000364953 64 ntBASIC1.87□□□□□ -2.11
LIG3P49916 SNORD38.2-201ENST00000384470 69 ntBASIC1.87□□□□□ -2.11
LIG3P49916 RNU6ATAC3P-201ENST00000387974 126 ntBASIC1.87□□□□□ -2.11
LIG3P49916 MIR764-201ENST00000390811 85 ntBASIC1.87□□□□□ -2.11
LIG3P49916 snoU13.23-201ENST00000458863 104 ntBASIC1.87□□□□□ -2.11
LIG3P49916 UBL5P1-201ENST00000507979 193 ntBASIC1.87□□□□□ -2.11
LIG3P49916 RNU6-902P-201ENST00000517212 91 ntBASIC1.87□□□□□ -2.11
LIG3P49916 AC012531.4-201ENST00000616509 177 ntBASIC1.87□□□□□ -2.11
LIG3P49916 AP001362.1-201ENST00000625165 124 ntBASIC1.87□□□□□ -2.11
LIG3P49916 AC068733.3-201ENST00000632757 269 ntTSL 3 BASIC1.87□□□□□ -2.11
LIG3P49916 KTN1-205ENST00000395314 4618 ntAPPRIS P4 TSL 1 (best) BASIC1.87□□□□□ -2.11
LIG3P49916 FSD1L-201ENST00000374707 7062 ntTSL 1 (best) BASIC1.87□□□□□ -2.11
LIG3P49916 ZNF260-205ENST00000593142 4047 ntAPPRIS P1 TSL 1 (best) BASIC1.86□□□□□ -2.11
LIG3P49916 MIR30D-201ENST00000362283 70 ntBASIC1.86□□□□□ -2.11
LIG3P49916 Y_RNA.95-201ENST00000363079 95 ntBASIC1.86□□□□□ -2.11
LIG3P49916 Y_RNA.220-201ENST00000364244 109 ntBASIC1.86□□□□□ -2.11
LIG3P49916 SNORA16.1-201ENST00000364597 132 ntBASIC1.86□□□□□ -2.11
LIG3P49916 SNORA26.9-201ENST00000391322 122 ntBASIC1.86□□□□□ -2.11
LIG3P49916 RNA5SP95-201ENST00000410319 137 ntBASIC1.86□□□□□ -2.11
LIG3P49916 AC048334.1-201ENST00000477975 159 ntBASIC1.86□□□□□ -2.11
LIG3P49916 MIR4439-201ENST00000583746 80 ntBASIC1.86□□□□□ -2.11
LIG3P49916 MIR4769-201ENST00000584126 77 ntBASIC1.86□□□□□ -2.11
LIG3P49916 SEPT14P17-201ENST00000617978 177 ntBASIC1.86□□□□□ -2.11
LIG3P49916 NFIA-AS1-206ENST00000630199 220 ntTSL 5 BASIC1.86□□□□□ -2.11
LIG3P49916 Y_RNA.168-201ENST00000363740 102 ntBASIC1.85□□□□□ -2.11
LIG3P49916 RNU6-1131P-201ENST00000364955 107 ntBASIC1.85□□□□□ -2.11
LIG3P49916 AC108210.2-201ENST00000503681 201 ntBASIC1.85□□□□□ -2.11
LIG3P49916 SNORA31.2-201ENST00000516019 134 ntBASIC1.85□□□□□ -2.11
LIG3P49916 RNU6-1006P-201ENST00000516998 103 ntBASIC1.85□□□□□ -2.11
LIG3P49916 MIR4419B-201ENST00000577260 68 ntBASIC1.85□□□□□ -2.11
LIG3P49916 AC091304.10-201ENST00000641554 121 ntBASIC1.85□□□□□ -2.11
LIG3P49916 Y_RNA.247-201ENST00000364500 92 ntBASIC1.84□□□□□ -2.11
LIG3P49916 RNU6-60P-201ENST00000364792 103 ntBASIC1.84□□□□□ -2.11
LIG3P49916 RNU6-580P-201ENST00000365159 107 ntBASIC1.84□□□□□ -2.11
LIG3P49916 MIR488-201ENST00000365739 83 ntBASIC1.84□□□□□ -2.11
LIG3P49916 MRPL35P3-201ENST00000421557 364 ntBASIC1.84□□□□□ -2.11
LIG3P49916 AC015712.3-201ENST00000559380 164 ntBASIC1.84□□□□□ -2.11
LIG3P49916 MALAT1.1-201ENST00000618249 95 ntBASIC1.84□□□□□ -2.11
LIG3P49916 KIAA1551-201ENST00000312561 6230 ntAPPRIS P1 TSL 1 (best) BASIC1.83□□□□□ -2.12
LIG3P49916 TDRD15-202ENST00000622654 5805 ntAPPRIS P1 BASIC1.83□□□□□ -2.12
LIG3P49916 Y_RNA.140-201ENST00000363474 103 ntBASIC1.83□□□□□ -2.12
LIG3P49916 RNY1P2-201ENST00000364820 117 ntBASIC1.83□□□□□ -2.12
LIG3P49916 SNORA2B-201ENST00000384583 137 ntBASIC1.83□□□□□ -2.12
LIG3P49916 MIR9-3-201ENST00000385084 90 ntBASIC1.83□□□□□ -2.12
LIG3P49916 RPS29P11-201ENST00000496507 171 ntBASIC1.83□□□□□ -2.12
LIG3P49916 RNU7-61P-201ENST00000515897 61 ntBASIC1.83□□□□□ -2.12
LIG3P49916 RNU6-548P-201ENST00000517083 115 ntBASIC1.83□□□□□ -2.12
LIG3P49916 TEX15-203ENST00000638951 11341 ntAPPRIS P1 TSL 5 BASIC1.82□□□□□ -2.12
LIG3P49916 Y_RNA.330-201ENST00000365230 109 ntBASIC1.82□□□□□ -2.12
LIG3P49916 Y_RNA.342-201ENST00000365352 113 ntBASIC1.82□□□□□ -2.12
LIG3P49916 MIR18B-201ENST00000454574 71 ntBASIC1.82□□□□□ -2.12
LIG3P49916 MIR4777-201ENST00000583710 86 ntBASIC1.82□□□□□ -2.12
LIG3P49916 uc_338.6-201ENST00000613544 171 ntBASIC1.82□□□□□ -2.12
LIG3P49916 U8.15-201ENST00000390947 134 ntBASIC1.81□□□□□ -2.12
LIG3P49916 RNU6-644P-201ENST00000391155 98 ntBASIC1.81□□□□□ -2.12
LIG3P49916 MIR548G-201ENST00000408442 89 ntBASIC1.81□□□□□ -2.12
LIG3P49916 Y_RNA.705-201ENST00000516862 110 ntBASIC1.81□□□□□ -2.12
LIG3P49916 MIR548Z-201ENST00000584743 97 ntBASIC1.81□□□□□ -2.12
LIG3P49916 RNU6-90P-201ENST00000606352 106 ntBASIC1.81□□□□□ -2.12
LIG3P49916 AC084768.2-201ENST00000622736 221 ntBASIC1.81□□□□□ -2.12
LIG3P49916 RNU6-49P-201ENST00000384256 107 ntBASIC1.8□□□□□ -2.12
LIG3P49916 RNU6-482P-201ENST00000391068 107 ntBASIC1.8□□□□□ -2.12
LIG3P49916 SPINT5P-201ENST00000448174 155 ntBASIC1.8□□□□□ -2.12
LIG3P49916 MTND5P40-201ENST00000559945 246 ntBASIC1.8□□□□□ -2.12
LIG3P49916 AC012676.2-201ENST00000619258 186 ntBASIC1.8□□□□□ -2.12
LIG3P49916 U6.109-201ENST00000636749 87 ntBASIC1.8□□□□□ -2.12
LIG3P49916 C9orf84-205ENST00000394779 5060 ntAPPRIS ALT2 TSL 2 BASIC1.79□□□□□ -2.12
LIG3P49916 RNU6-294P-201ENST00000364999 102 ntBASIC1.79□□□□□ -2.12
LIG3P49916 Y_RNA.467-201ENST00000384297 102 ntBASIC1.79□□□□□ -2.12
LIG3P49916 SNORA75.2-201ENST00000391138 150 ntBASIC1.79□□□□□ -2.12
LIG3P49916 SNORA75.3-201ENST00000391231 150 ntBASIC1.79□□□□□ -2.12
LIG3P49916 AC109327.2-201ENST00000448339 378 ntBASIC1.79□□□□□ -2.12
LIG3P49916 AC138749.4-201ENST00000563970 127 ntBASIC1.79□□□□□ -2.12
LIG3P49916 SNORD113.3-201ENST00000364630 78 ntBASIC1.78□□□□□ -2.12
LIG3P49916 RNU6-813P-201ENST00000384691 107 ntBASIC1.78□□□□□ -2.12
LIG3P49916 RNU6-972P-201ENST00000391208 107 ntBASIC1.78□□□□□ -2.12
LIG3P49916 AL591704.2-201ENST00000421658 181 ntBASIC1.78□□□□□ -2.12
LIG3P49916 COX7A2-206ENST00000472311 325 ntTSL 2 BASIC1.78□□□□□ -2.12
LIG3P49916 MIR8081-201ENST00000611533 95 ntBASIC1.78□□□□□ -2.12
LIG3P49916 U7.3-201ENST00000616123 62 ntBASIC1.78□□□□□ -2.12
LIG3P49916 MIR4679-1-201ENST00000637619 75 ntBASIC1.78□□□□□ -2.12
LIG3P49916 RNA5SP133-201ENST00000363368 119 ntBASIC1.77□□□□□ -2.13
LIG3P49916 5S_rRNA.2-201ENST00000391293 112 ntBASIC1.77□□□□□ -2.13
LIG3P49916 RNU6-887P-201ENST00000410660 100 ntBASIC1.77□□□□□ -2.13
LIG3P49916 PPP1R3A-201ENST00000284601 4384 ntAPPRIS P1 TSL 1 (best) BASIC1.76□□□□□ -2.13
LIG3P49916 RNA5SP99-201ENST00000364020 114 ntBASIC1.76□□□□□ -2.13
LIG3P49916 RNU6-1163P-201ENST00000364516 107 ntBASIC1.76□□□□□ -2.13
LIG3P49916 Y_RNA.290-201ENST00000364879 114 ntBASIC1.76□□□□□ -2.13
LIG3P49916 SNORA80D-201ENST00000384488 135 ntBASIC1.76□□□□□ -2.13
LIG3P49916 Y_RNA.558-201ENST00000384685 113 ntBASIC1.76□□□□□ -2.13
LIG3P49916 RNU6-997P-201ENST00000384725 107 ntBASIC1.76□□□□□ -2.13
LIG3P49916 Y_RNA.567-201ENST00000384736 106 ntBASIC1.76□□□□□ -2.13
LIG3P49916 RNY1P7-201ENST00000384743 110 ntBASIC1.76□□□□□ -2.13
LIG3P49916 RNU6ATAC2P-201ENST00000387943 126 ntBASIC1.76□□□□□ -2.13
LIG3P49916 TRAJ1-201ENST00000390536 62 ntAPPRIS P1 BASIC1.76□□□□□ -2.13
LIG3P49916 SNORD93-201ENST00000408813 74 ntBASIC1.76□□□□□ -2.13
LIG3P49916 SNORA25.15-201ENST00000516487 89 ntBASIC1.76□□□□□ -2.13
LIG3P49916 RNU6-844P-201ENST00000517175 102 ntBASIC1.76□□□□□ -2.13
Retrieved 100 of 98,524 protein–RNA pairs in 200 ms