Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 SNORA8.2-201ENST00000384372 139 ntBASIC0.31□□□□□ -2.36
CDX1P47902 SNORA75.5-201ENST00000391291 81 ntBASIC0.31□□□□□ -2.36
CDX1P47902 RNU6-1219P-201ENST00000516143 112 ntBASIC0.31□□□□□ -2.36
CDX1P47902 RNA5SP134-201ENST00000516492 96 ntBASIC0.31□□□□□ -2.36
CDX1P47902 AC130289.1-201ENST00000577321 73 ntBASIC0.31□□□□□ -2.36
CDX1P47902 HOTAIRM1_4.1-201ENST00000617934 102 ntBASIC0.31□□□□□ -2.36
CDX1P47902 VPS35-212ENST00000640313 141 ntTSL 5 BASIC0.31□□□□□ -2.36
CDX1P47902 SNORA32-201ENST00000384072 121 ntBASIC0.3□□□□□ -2.36
CDX1P47902 Y_RNA.470-201ENST00000384307 117 ntBASIC0.3□□□□□ -2.36
CDX1P47902 Y_RNA.536-201ENST00000384621 113 ntBASIC0.3□□□□□ -2.36
CDX1P47902 RNU6-535P-201ENST00000384722 107 ntBASIC0.3□□□□□ -2.36
CDX1P47902 AC096949.1-201ENST00000412047 152 ntBASIC0.3□□□□□ -2.36
CDX1P47902 SNORA25.16-201ENST00000516741 121 ntBASIC0.3□□□□□ -2.36
CDX1P47902 AC022559.1-201ENST00000520905 205 ntBASIC0.3□□□□□ -2.36
CDX1P47902 MIR103A1-201ENST00000362165 78 ntBASIC0.29□□□□□ -2.36
CDX1P47902 SNORD44.1-201ENST00000363202 61 ntBASIC0.29□□□□□ -2.36
CDX1P47902 SNORD118-201ENST00000363593 134 ntBASIC0.29□□□□□ -2.36
CDX1P47902 SNORD18B-201ENST00000365659 72 ntBASIC0.29□□□□□ -2.36
CDX1P47902 RNU6-588P-201ENST00000410281 105 ntBASIC0.29□□□□□ -2.36
CDX1P47902 RNA5SP236-201ENST00000516169 116 ntBASIC0.29□□□□□ -2.36
CDX1P47902 SNORA31.14-201ENST00000516728 116 ntBASIC0.29□□□□□ -2.36
CDX1P47902 RNU7-35P-201ENST00000517174 62 ntBASIC0.29□□□□□ -2.36
CDX1P47902 AC011603.4-201ENST00000611325 277 ntBASIC0.29□□□□□ -2.36
CDX1P47902 Y_RNA.32-201ENST00000362589 110 ntBASIC0.28□□□□□ -2.36
CDX1P47902 SNORD115-2-201ENST00000362842 82 ntBASIC0.28□□□□□ -2.36
CDX1P47902 Y_RNA.120-201ENST00000363304 110 ntBASIC0.28□□□□□ -2.36
CDX1P47902 RNU6-1229P-201ENST00000364295 107 ntBASIC0.28□□□□□ -2.36
CDX1P47902 Y_RNA.297-201ENST00000364950 91 ntBASIC0.28□□□□□ -2.36
CDX1P47902 SNORD115-20-201ENST00000365099 82 ntBASIC0.28□□□□□ -2.36
CDX1P47902 SNORD37.2-201ENST00000391075 66 ntBASIC0.28□□□□□ -2.36
CDX1P47902 SNRPGP12-201ENST00000449481 213 ntBASIC0.28□□□□□ -2.36
CDX1P47902 Y_RNA.644-201ENST00000459006 113 ntBASIC0.28□□□□□ -2.36
CDX1P47902 Y_RNA.674-201ENST00000516362 113 ntBASIC0.28□□□□□ -2.36
CDX1P47902 RNU6-135P-201ENST00000516769 101 ntBASIC0.28□□□□□ -2.36
CDX1P47902 MTND5P34-201ENST00000568888 325 ntBASIC0.28□□□□□ -2.36
CDX1P47902 MIR1273G-201ENST00000577677 100 ntBASIC0.28□□□□□ -2.36
CDX1P47902 MIR4305-201ENST00000583252 102 ntBASIC0.28□□□□□ -2.36
CDX1P47902 Y_RNA.274-201ENST00000364714 101 ntBASIC0.27□□□□□ -2.37
CDX1P47902 RNU6-1327P-201ENST00000365302 105 ntBASIC0.27□□□□□ -2.37
CDX1P47902 Y_RNA.497-201ENST00000384447 98 ntBASIC0.27□□□□□ -2.37
CDX1P47902 Y_RNA.531-201ENST00000384589 121 ntBASIC0.27□□□□□ -2.37
CDX1P47902 RNU6-239P-201ENST00000390990 99 ntBASIC0.27□□□□□ -2.37
CDX1P47902 Y_RNA.793-201ENST00000411222 111 ntBASIC0.27□□□□□ -2.37
CDX1P47902 RNU6-1194P-201ENST00000516208 104 ntBASIC0.27□□□□□ -2.37
CDX1P47902 RNA5SP268-201ENST00000516828 124 ntBASIC0.27□□□□□ -2.37
CDX1P47902 AC138907.4-201ENST00000570107 226 ntBASIC0.27□□□□□ -2.37
CDX1P47902 MIR3646-201ENST00000578301 84 ntBASIC0.27□□□□□ -2.37
CDX1P47902 AC072026.1-201ENST00000605023 201 ntBASIC0.27□□□□□ -2.37
CDX1P47902 RNU4-58P-201ENST00000363192 141 ntBASIC0.26□□□□□ -2.37
CDX1P47902 RNA5SP133-201ENST00000363368 119 ntBASIC0.26□□□□□ -2.37
CDX1P47902 SNORA36.1-201ENST00000363424 132 ntBASIC0.26□□□□□ -2.37
CDX1P47902 Y_RNA.188-201ENST00000363952 111 ntBASIC0.26□□□□□ -2.37
CDX1P47902 RNU6-291P-201ENST00000384720 107 ntBASIC0.26□□□□□ -2.37
CDX1P47902 RNU6-240P-201ENST00000516098 97 ntBASIC0.26□□□□□ -2.37
CDX1P47902 RNU6-1271P-201ENST00000517049 105 ntBASIC0.26□□□□□ -2.37
CDX1P47902 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.25□□□□□ -2.37
CDX1P47902 RNA5SP62-201ENST00000363457 110 ntBASIC0.25□□□□□ -2.37
CDX1P47902 RNU6-1099P-201ENST00000363533 107 ntBASIC0.25□□□□□ -2.37
CDX1P47902 RNA5SP325-201ENST00000363756 130 ntBASIC0.25□□□□□ -2.37
CDX1P47902 RNU6-531P-201ENST00000516694 104 ntBASIC0.25□□□□□ -2.37
CDX1P47902 AP002392.1-201ENST00000537692 208 ntBASIC0.25□□□□□ -2.37
CDX1P47902 AC021443.1-201ENST00000604478 211 ntBASIC0.25□□□□□ -2.37
CDX1P47902 AC141273.2-201ENST00000618989 130 ntBASIC0.25□□□□□ -2.37
CDX1P47902 MIR101-2-201ENST00000362195 79 ntBASIC0.24□□□□□ -2.37
CDX1P47902 RNU7-164P-201ENST00000459221 62 ntBASIC0.24□□□□□ -2.37
CDX1P47902 RNU2-35P-201ENST00000516446 142 ntBASIC0.24□□□□□ -2.37
CDX1P47902 MIR548AE2-201ENST00000583456 67 ntBASIC0.24□□□□□ -2.37
CDX1P47902 U6.109-201ENST00000636749 87 ntBASIC0.24□□□□□ -2.37
CDX1P47902 C9orf84-203ENST00000374287 4721 ntAPPRIS P3 TSL 5 BASIC0.23□□□□□ -2.37
CDX1P47902 Y_RNA.401-201ENST00000383965 117 ntBASIC0.23□□□□□ -2.37
CDX1P47902 RNU2-59P-201ENST00000410482 191 ntBASIC0.23□□□□□ -2.37
CDX1P47902 SUMO1P3-201ENST00000439961 304 ntBASIC0.23□□□□□ -2.37
CDX1P47902 RNU6-863P-201ENST00000515989 104 ntBASIC0.23□□□□□ -2.37
CDX1P47902 RNA5SP227-201ENST00000516184 113 ntBASIC0.23□□□□□ -2.37
CDX1P47902 SNORD67.1-201ENST00000516618 108 ntBASIC0.23□□□□□ -2.37
CDX1P47902 AC078938.1-201ENST00000620993 318 ntBASIC0.23□□□□□ -2.37
CDX1P47902 MIR924-201ENST00000638017 53 ntBASIC0.23□□□□□ -2.37
CDX1P47902 RNU4-84P-201ENST00000364200 139 ntBASIC0.22□□□□□ -2.37
CDX1P47902 RNU6-1318P-201ENST00000365389 103 ntBASIC0.22□□□□□ -2.37
CDX1P47902 Y_RNA.552-201ENST00000384665 112 ntBASIC0.22□□□□□ -2.37
CDX1P47902 MIRLET7F2-201ENST00000385277 83 ntBASIC0.22□□□□□ -2.37
CDX1P47902 Y_RNA.584-201ENST00000391090 114 ntBASIC0.22□□□□□ -2.37
CDX1P47902 AC073261.1-201ENST00000429409 121 ntBASIC0.22□□□□□ -2.37
CDX1P47902 AC108740.1-201ENST00000498629 225 ntBASIC0.22□□□□□ -2.37
CDX1P47902 MIR5093-201ENST00000583199 100 ntBASIC0.22□□□□□ -2.37
CDX1P47902 DNAJC19P2-201ENST00000593340 302 ntBASIC0.22□□□□□ -2.37
CDX1P47902 SNORD114-10-201ENST00000363409 72 ntBASIC0.21□□□□□ -2.38
CDX1P47902 RNU6-379P-201ENST00000363813 104 ntBASIC0.21□□□□□ -2.38
CDX1P47902 SNORD28-201ENST00000384706 75 ntBASIC0.21□□□□□ -2.38
CDX1P47902 AC103879.1-201ENST00000503093 255 ntTSL 2 BASIC0.21□□□□□ -2.38
CDX1P47902 RNU7-121P-201ENST00000516604 62 ntBASIC0.21□□□□□ -2.38
CDX1P47902 RNU7-137P-201ENST00000516788 62 ntBASIC0.21□□□□□ -2.38
CDX1P47902 SCARNA16.5-201ENST00000517114 183 ntBASIC0.21□□□□□ -2.38
CDX1P47902 MIR4639-201ENST00000584938 69 ntBASIC0.21□□□□□ -2.38
CDX1P47902 MIR8087-201ENST00000612745 78 ntBASIC0.21□□□□□ -2.38
CDX1P47902 AC105081.1-201ENST00000617727 106 ntBASIC0.21□□□□□ -2.38
CDX1P47902 MIR330-201ENST00000362196 94 ntBASIC0.2□□□□□ -2.38
CDX1P47902 Y_RNA.119-201ENST00000363301 96 ntBASIC0.2□□□□□ -2.38
CDX1P47902 Y_RNA.299-201ENST00000364973 94 ntBASIC0.2□□□□□ -2.38
CDX1P47902 RNU6-716P-201ENST00000365621 103 ntBASIC0.2□□□□□ -2.38
Retrieved 100 of 98,524 protein–RNA pairs in 181.4 ms