Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 Y_RNA.228-201ENST00000364346 98 ntBASIC-0.43□□□□□ -2.48
COL18A1P39060 RNU6-290P-201ENST00000365212 101 ntBASIC-0.43□□□□□ -2.48
COL18A1P39060 Y_RNA.622-201ENST00000411091 108 ntBASIC-0.43□□□□□ -2.48
COL18A1P39060 MIR5197-201ENST00000583721 112 ntBASIC-0.43□□□□□ -2.48
COL18A1P39060 uc_338.28-201ENST00000612082 187 ntBASIC-0.43□□□□□ -2.48
COL18A1P39060 MIR6841-201ENST00000637129 72 ntBASIC-0.43□□□□□ -2.48
COL18A1P39060 UBE2WP1-201ENST00000362030 340 ntBASIC-0.44□□□□□ -2.48
COL18A1P39060 RNU4-40P-201ENST00000364351 143 ntBASIC-0.44□□□□□ -2.48
COL18A1P39060 RNY4P7-201ENST00000364600 96 ntBASIC-0.44□□□□□ -2.48
COL18A1P39060 Y_RNA.375-201ENST00000365625 101 ntBASIC-0.44□□□□□ -2.48
COL18A1P39060 Y_RNA.394-201ENST00000383942 103 ntBASIC-0.44□□□□□ -2.48
COL18A1P39060 SNORD19B-201ENST00000459623 84 ntBASIC-0.44□□□□□ -2.48
COL18A1P39060 RNU6-158P-201ENST00000517104 100 ntBASIC-0.44□□□□□ -2.48
COL18A1P39060 RRM2B-207ENST00000519962 201 ntTSL 1 (best) BASIC-0.44□□□□□ -2.48
COL18A1P39060 MIR3165-201ENST00000579874 75 ntBASIC-0.44□□□□□ -2.48
COL18A1P39060 AC093783.1-201ENST00000612976 329 ntBASIC-0.44□□□□□ -2.48
COL18A1P39060 AC084368.1-201ENST00000620935 65 ntBASIC-0.44□□□□□ -2.48
COL18A1P39060 AL162726.3-218ENST00000636401 95 ntBASIC-0.44□□□□□ -2.48
COL18A1P39060 Y_RNA.23-201ENST00000362496 106 ntBASIC-0.45□□□□□ -2.48
COL18A1P39060 RNU6-509P-201ENST00000363519 107 ntBASIC-0.45□□□□□ -2.48
COL18A1P39060 Y_RNA.154-201ENST00000363624 102 ntBASIC-0.45□□□□□ -2.48
COL18A1P39060 RNY1P7-201ENST00000384743 110 ntBASIC-0.45□□□□□ -2.48
COL18A1P39060 AL606845.1-201ENST00000404881 255 ntBASIC-0.45□□□□□ -2.48
COL18A1P39060 FGF7P4-201ENST00000509595 295 ntBASIC-0.45□□□□□ -2.48
COL18A1P39060 MIR548H5-201ENST00000580314 60 ntBASIC-0.45□□□□□ -2.48
COL18A1P39060 MIR4324-201ENST00000584846 72 ntBASIC-0.45□□□□□ -2.48
COL18A1P39060 RNU7-10P-201ENST00000607194 63 ntBASIC-0.45□□□□□ -2.48
COL18A1P39060 SNORA70.25-201ENST00000612741 95 ntBASIC-0.45□□□□□ -2.48
COL18A1P39060 CDKN3-212ENST00000620759 196 ntTSL 5 BASIC-0.45□□□□□ -2.48
COL18A1P39060 SNORA63.5-201ENST00000363548 123 ntBASIC-0.45□□□□□ -2.48
COL18A1P39060 Y_RNA.204-201ENST00000364112 102 ntBASIC-0.45□□□□□ -2.48
COL18A1P39060 RNA5SP192-201ENST00000364404 120 ntBASIC-0.45□□□□□ -2.48
COL18A1P39060 RNU6-211P-201ENST00000384047 107 ntBASIC-0.45□□□□□ -2.48
COL18A1P39060 SNORD41.1-201ENST00000391000 69 ntBASIC-0.45□□□□□ -2.48
COL18A1P39060 RNA5SP300-201ENST00000391197 107 ntBASIC-0.45□□□□□ -2.48
COL18A1P39060 MIR6514-201ENST00000622549 70 ntBASIC-0.45□□□□□ -2.48
COL18A1P39060 Y_RNA.125-201ENST00000363371 111 ntBASIC-0.46□□□□□ -2.48
COL18A1P39060 MIR196A2-201ENST00000385189 110 ntBASIC-0.46□□□□□ -2.48
COL18A1P39060 SNORD110-201ENST00000408189 75 ntBASIC-0.46□□□□□ -2.48
COL18A1P39060 RNU6-101P-201ENST00000410323 104 ntBASIC-0.46□□□□□ -2.48
COL18A1P39060 AC109327.2-201ENST00000448339 378 ntBASIC-0.46□□□□□ -2.48
COL18A1P39060 RNU7-35P-201ENST00000517174 62 ntBASIC-0.46□□□□□ -2.48
COL18A1P39060 RNU7-161P-201ENST00000517289 62 ntBASIC-0.46□□□□□ -2.48
COL18A1P39060 AL670379.3-201ENST00000605040 251 ntBASIC-0.46□□□□□ -2.48
COL18A1P39060 RNU6-728P-201ENST00000365375 104 ntBASIC-0.47□□□□□ -2.48
COL18A1P39060 RNU6-429P-201ENST00000384582 108 ntBASIC-0.47□□□□□ -2.48
COL18A1P39060 Y_RNA.616-201ENST00000410835 95 ntBASIC-0.47□□□□□ -2.48
COL18A1P39060 RNU6-1143P-201ENST00000516125 104 ntBASIC-0.47□□□□□ -2.48
COL18A1P39060 CLRN1-AS1.1-201ENST00000615643 79 ntBASIC-0.47□□□□□ -2.48
COL18A1P39060 Y_RNA.119-201ENST00000363301 96 ntBASIC-0.47□□□□□ -2.49
COL18A1P39060 MIR616-201ENST00000385293 97 ntBASIC-0.47□□□□□ -2.49
COL18A1P39060 MIR1252-201ENST00000408861 65 ntBASIC-0.47□□□□□ -2.49
COL18A1P39060 AL365205.2-201ENST00000594586 68 ntBASIC-0.47□□□□□ -2.49
COL18A1P39060 AL356055.1-201ENST00000602528 446 ntBASIC-0.47□□□□□ -2.49
COL18A1P39060 MIR376A2-201ENST00000636782 80 ntBASIC-0.47□□□□□ -2.49
COL18A1P39060 RNU6-770P-201ENST00000363929 105 ntBASIC-0.48□□□□□ -2.49
COL18A1P39060 Y_RNA.541-201ENST00000384640 113 ntBASIC-0.48□□□□□ -2.49
COL18A1P39060 Y_RNA.721-201ENST00000517207 102 ntBASIC-0.48□□□□□ -2.49
COL18A1P39060 AC015818.4-201ENST00000580931 353 ntTSL 5 BASIC-0.48□□□□□ -2.49
COL18A1P39060 RNU4-84P-201ENST00000364200 139 ntBASIC-0.49□□□□□ -2.49
COL18A1P39060 RNU6-823P-201ENST00000391042 103 ntBASIC-0.49□□□□□ -2.49
COL18A1P39060 SCARNA17-201ENST00000516183 144 ntBASIC-0.49□□□□□ -2.49
COL18A1P39060 RNU6-453P-201ENST00000516819 85 ntBASIC-0.49□□□□□ -2.49
COL18A1P39060 SNORA40.15-201ENST00000516884 107 ntBASIC-0.49□□□□□ -2.49
COL18A1P39060 U6.109-201ENST00000636749 87 ntBASIC-0.49□□□□□ -2.49
COL18A1P39060 TRAJ1-201ENST00000390536 62 ntAPPRIS P1 BASIC-0.5□□□□□ -2.49
COL18A1P39060 RNA5SP33-201ENST00000516687 98 ntBASIC-0.5□□□□□ -2.49
COL18A1P39060 MIR148A-201ENST00000362215 68 ntBASIC-0.5□□□□□ -2.49
COL18A1P39060 snoU2_19.2-201ENST00000363024 80 ntBASIC-0.5□□□□□ -2.49
COL18A1P39060 Y_RNA.105-201ENST00000363182 111 ntBASIC-0.5□□□□□ -2.49
COL18A1P39060 RNA5SP403-201ENST00000363598 108 ntBASIC-0.5□□□□□ -2.49
COL18A1P39060 Y_RNA.315-201ENST00000365117 102 ntBASIC-0.5□□□□□ -2.49
COL18A1P39060 Y_RNA.452-201ENST00000384202 108 ntBASIC-0.5□□□□□ -2.49
COL18A1P39060 RNU7-113P-201ENST00000459273 62 ntBASIC-0.5□□□□□ -2.49
COL18A1P39060 RNU7-104P-201ENST00000459398 79 ntBASIC-0.5□□□□□ -2.49
COL18A1P39060 RNU6-1258P-201ENST00000516911 111 ntBASIC-0.5□□□□□ -2.49
COL18A1P39060 IGHVIII-67-2-201ENST00000519849 88 ntBASIC-0.5□□□□□ -2.49
COL18A1P39060 CYP19A1-220ENST00000613097 123 ntTSL 5 BASIC-0.5□□□□□ -2.49
COL18A1P39060 SNORD115-2-201ENST00000362842 82 ntBASIC-0.51□□□□□ -2.49
COL18A1P39060 SNORD114-10-201ENST00000363409 72 ntBASIC-0.51□□□□□ -2.49
COL18A1P39060 SNORD115-20-201ENST00000365099 82 ntBASIC-0.51□□□□□ -2.49
COL18A1P39060 RNU6-449P-201ENST00000383914 107 ntBASIC-0.51□□□□□ -2.49
COL18A1P39060 Y_RNA.389-201ENST00000383924 113 ntBASIC-0.51□□□□□ -2.49
COL18A1P39060 Y_RNA.391-201ENST00000383933 94 ntBASIC-0.51□□□□□ -2.49
COL18A1P39060 MIR516B1-201ENST00000385211 90 ntBASIC-0.51□□□□□ -2.49
COL18A1P39060 Y_RNA.579-201ENST00000390939 94 ntBASIC-0.51□□□□□ -2.49
COL18A1P39060 Y_RNA.645-201ENST00000391229 102 ntBASIC-0.51□□□□□ -2.49
COL18A1P39060 RNU6-121P-201ENST00000410525 99 ntBASIC-0.51□□□□□ -2.49
COL18A1P39060 AC006210.1-201ENST00000424882 111 ntBASIC-0.51□□□□□ -2.49
COL18A1P39060 SERF1AP1-201ENST00000514575 187 ntBASIC-0.51□□□□□ -2.49
COL18A1P39060 RNY3P15-201ENST00000516297 97 ntBASIC-0.51□□□□□ -2.49
COL18A1P39060 Y_RNA.674-201ENST00000516362 113 ntBASIC-0.51□□□□□ -2.49
COL18A1P39060 SNORD116-25-201ENST00000516517 92 ntBASIC-0.51□□□□□ -2.49
COL18A1P39060 RNU6-570P-201ENST00000517051 105 ntBASIC-0.51□□□□□ -2.49
COL18A1P39060 KCNQ1OT1_5.1-201ENST00000621902 226 ntBASIC-0.51□□□□□ -2.49
COL18A1P39060 Y_RNA.152-201ENST00000363578 100 ntBASIC-0.52□□□□□ -2.49
COL18A1P39060 Y_RNA.352-201ENST00000365439 102 ntBASIC-0.52□□□□□ -2.49
COL18A1P39060 RNU7-74P-201ENST00000459104 62 ntBASIC-0.52□□□□□ -2.49
COL18A1P39060 Y_RNA.171-201ENST00000363760 102 ntBASIC-0.52□□□□□ -2.49
COL18A1P39060 Y_RNA.176-201ENST00000363815 109 ntBASIC-0.52□□□□□ -2.49
Retrieved 100 of 98,524 protein–RNA pairs in 220.3 ms