Protein–RNA interactions for Protein: F8WFD2

NPIPA3, Nuclear pore complex-interacting protein family member A3, humanhuman

Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPIPA3F8WFD2 Y_RNA.357-201ENST00000365487 109 ntBASIC0.34□□□□□ -2.36
NPIPA3F8WFD2 RNU6-588P-201ENST00000410281 105 ntBASIC0.34□□□□□ -2.36
NPIPA3F8WFD2 HOTAIRM1_4.1-201ENST00000617934 102 ntBASIC0.34□□□□□ -2.36
NPIPA3F8WFD2 C9orf84-203ENST00000374287 4721 ntAPPRIS P3 TSL 5 BASIC0.33□□□□□ -2.36
NPIPA3F8WFD2 Y_RNA.297-201ENST00000364950 91 ntBASIC0.33□□□□□ -2.36
NPIPA3F8WFD2 SNORA32-201ENST00000384072 121 ntBASIC0.33□□□□□ -2.36
NPIPA3F8WFD2 SNORA75.5-201ENST00000391291 81 ntBASIC0.33□□□□□ -2.36
NPIPA3F8WFD2 AL512326.2-201ENST00000426359 151 ntBASIC0.33□□□□□ -2.36
NPIPA3F8WFD2 Y_RNA.644-201ENST00000459006 113 ntBASIC0.33□□□□□ -2.36
NPIPA3F8WFD2 AC103879.1-201ENST00000503093 255 ntTSL 2 BASIC0.33□□□□□ -2.36
NPIPA3F8WFD2 Y_RNA.674-201ENST00000516362 113 ntBASIC0.33□□□□□ -2.36
NPIPA3F8WFD2 Y_RNA.697-201ENST00000516776 113 ntBASIC0.33□□□□□ -2.36
NPIPA3F8WFD2 RNU6-765P-201ENST00000516916 99 ntBASIC0.33□□□□□ -2.36
NPIPA3F8WFD2 DEFB131E-201ENST00000532329 154 ntBASIC0.33□□□□□ -2.36
NPIPA3F8WFD2 NEAT1_2.1-201ENST00000620525 105 ntBASIC0.33□□□□□ -2.36
NPIPA3F8WFD2 MIR103A1-201ENST00000362165 78 ntBASIC0.32□□□□□ -2.36
NPIPA3F8WFD2 Y_RNA.188-201ENST00000363952 111 ntBASIC0.32□□□□□ -2.36
NPIPA3F8WFD2 SNORA8.2-201ENST00000384372 139 ntBASIC0.32□□□□□ -2.36
NPIPA3F8WFD2 Y_RNA.497-201ENST00000384447 98 ntBASIC0.32□□□□□ -2.36
NPIPA3F8WFD2 Y_RNA.793-201ENST00000411222 111 ntBASIC0.32□□□□□ -2.36
NPIPA3F8WFD2 SNORA31.14-201ENST00000516728 116 ntBASIC0.32□□□□□ -2.36
NPIPA3F8WFD2 RNU6-1271P-201ENST00000517049 105 ntBASIC0.32□□□□□ -2.36
NPIPA3F8WFD2 RNU7-35P-201ENST00000517174 62 ntBASIC0.32□□□□□ -2.36
NPIPA3F8WFD2 AC022523.2-201ENST00000561045 150 ntBASIC0.32□□□□□ -2.36
NPIPA3F8WFD2 MTND5P34-201ENST00000568888 325 ntBASIC0.32□□□□□ -2.36
NPIPA3F8WFD2 MIR8087-201ENST00000612745 78 ntBASIC0.32□□□□□ -2.36
NPIPA3F8WFD2 Y_RNA.32-201ENST00000362589 110 ntBASIC0.31□□□□□ -2.36
NPIPA3F8WFD2 SNORD44.1-201ENST00000363202 61 ntBASIC0.31□□□□□ -2.36
NPIPA3F8WFD2 Y_RNA.120-201ENST00000363304 110 ntBASIC0.31□□□□□ -2.36
NPIPA3F8WFD2 RNU6-716P-201ENST00000365621 103 ntBASIC0.31□□□□□ -2.36
NPIPA3F8WFD2 Y_RNA.536-201ENST00000384621 113 ntBASIC0.31□□□□□ -2.36
NPIPA3F8WFD2 RNU6-535P-201ENST00000384722 107 ntBASIC0.31□□□□□ -2.36
NPIPA3F8WFD2 SNORD37.2-201ENST00000391075 66 ntBASIC0.31□□□□□ -2.36
NPIPA3F8WFD2 AL078595.1-201ENST00000404458 226 ntBASIC0.31□□□□□ -2.36
NPIPA3F8WFD2 MTATP6P21-201ENST00000440681 189 ntBASIC0.31□□□□□ -2.36
NPIPA3F8WFD2 RNU6-240P-201ENST00000516098 97 ntBASIC0.31□□□□□ -2.36
NPIPA3F8WFD2 RNA5SP330-201ENST00000517096 96 ntBASIC0.31□□□□□ -2.36
NPIPA3F8WFD2 MIR4305-201ENST00000583252 102 ntBASIC0.31□□□□□ -2.36
NPIPA3F8WFD2 AC072026.1-201ENST00000605023 201 ntBASIC0.31□□□□□ -2.36
NPIPA3F8WFD2 G3BP1-214ENST00000627077 114 ntTSL 5 BASIC0.31□□□□□ -2.36
NPIPA3F8WFD2 AC090625.1-201ENST00000357130 210 ntBASIC0.3□□□□□ -2.36
NPIPA3F8WFD2 Y_RNA.115-201ENST00000363272 98 ntBASIC0.3□□□□□ -2.36
NPIPA3F8WFD2 SNORA36.1-201ENST00000363424 132 ntBASIC0.3□□□□□ -2.36
NPIPA3F8WFD2 SNORD118-201ENST00000363593 134 ntBASIC0.3□□□□□ -2.36
NPIPA3F8WFD2 Y_RNA.174-201ENST00000363781 105 ntBASIC0.3□□□□□ -2.36
NPIPA3F8WFD2 Y_RNA.258-201ENST00000364613 105 ntBASIC0.3□□□□□ -2.36
NPIPA3F8WFD2 RNU6-239P-201ENST00000390990 99 ntBASIC0.3□□□□□ -2.36
NPIPA3F8WFD2 AP002392.1-201ENST00000537692 208 ntBASIC0.3□□□□□ -2.36
NPIPA3F8WFD2 AC141273.2-201ENST00000618989 130 ntBASIC0.3□□□□□ -2.36
NPIPA3F8WFD2 AC078938.1-201ENST00000620993 318 ntBASIC0.3□□□□□ -2.36
NPIPA3F8WFD2 MIR330-201ENST00000362196 94 ntBASIC0.29□□□□□ -2.36
NPIPA3F8WFD2 SNORD115-2-201ENST00000362842 82 ntBASIC0.29□□□□□ -2.36
NPIPA3F8WFD2 RNU6-379P-201ENST00000363813 104 ntBASIC0.29□□□□□ -2.36
NPIPA3F8WFD2 SNORD115-20-201ENST00000365099 82 ntBASIC0.29□□□□□ -2.36
NPIPA3F8WFD2 Y_RNA.531-201ENST00000384589 121 ntBASIC0.29□□□□□ -2.36
NPIPA3F8WFD2 RNU6-291P-201ENST00000384720 107 ntBASIC0.29□□□□□ -2.36
NPIPA3F8WFD2 RNU2-35P-201ENST00000516446 142 ntBASIC0.29□□□□□ -2.36
NPIPA3F8WFD2 RNA5SP134-201ENST00000516492 96 ntBASIC0.29□□□□□ -2.36
NPIPA3F8WFD2 RNU6-531P-201ENST00000516694 104 ntBASIC0.29□□□□□ -2.36
NPIPA3F8WFD2 AC138907.4-201ENST00000570107 226 ntBASIC0.29□□□□□ -2.36
NPIPA3F8WFD2 MIR3646-201ENST00000578301 84 ntBASIC0.29□□□□□ -2.36
NPIPA3F8WFD2 MIR4514-201ENST00000581410 57 ntBASIC0.29□□□□□ -2.36
NPIPA3F8WFD2 MIR548AE2-201ENST00000583456 67 ntBASIC0.29□□□□□ -2.36
NPIPA3F8WFD2 AC021443.1-201ENST00000604478 211 ntBASIC0.29□□□□□ -2.36
NPIPA3F8WFD2 AC011603.4-201ENST00000611325 277 ntBASIC0.29□□□□□ -2.36
NPIPA3F8WFD2 MIR3658-201ENST00000636291 56 ntBASIC0.29□□□□□ -2.36
NPIPA3F8WFD2 VPS35-212ENST00000640313 141 ntTSL 5 BASIC0.29□□□□□ -2.36
NPIPA3F8WFD2 RNA5SP133-201ENST00000363368 119 ntBASIC0.28□□□□□ -2.36
NPIPA3F8WFD2 RNU4-84P-201ENST00000364200 139 ntBASIC0.28□□□□□ -2.36
NPIPA3F8WFD2 SNORD18B-201ENST00000365659 72 ntBASIC0.28□□□□□ -2.36
NPIPA3F8WFD2 Y_RNA.401-201ENST00000383965 117 ntBASIC0.28□□□□□ -2.36
NPIPA3F8WFD2 MIR1197-201ENST00000408818 88 ntBASIC0.28□□□□□ -2.36
NPIPA3F8WFD2 SNRPGP12-201ENST00000449481 213 ntBASIC0.28□□□□□ -2.36
NPIPA3F8WFD2 RNU6-1194P-201ENST00000516208 104 ntBASIC0.28□□□□□ -2.36
NPIPA3F8WFD2 RNU6-388P-201ENST00000517012 105 ntBASIC0.28□□□□□ -2.36
NPIPA3F8WFD2 RNU6-389P-201ENST00000517048 105 ntBASIC0.28□□□□□ -2.36
NPIPA3F8WFD2 AC107958.3-201ENST00000553410 431 ntTSL 3 BASIC0.28□□□□□ -2.36
NPIPA3F8WFD2 U6.109-201ENST00000636749 87 ntBASIC0.28□□□□□ -2.36
NPIPA3F8WFD2 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.28□□□□□ -2.36
NPIPA3F8WFD2 RNA5SP457-201ENST00000363657 124 ntBASIC0.27□□□□□ -2.37
NPIPA3F8WFD2 RNU7-164P-201ENST00000459221 62 ntBASIC0.27□□□□□ -2.37
NPIPA3F8WFD2 AC108740.1-201ENST00000498629 225 ntBASIC0.27□□□□□ -2.37
NPIPA3F8WFD2 SNORD67.1-201ENST00000516618 108 ntBASIC0.27□□□□□ -2.37
NPIPA3F8WFD2 SNORA62.5-201ENST00000516634 120 ntBASIC0.27□□□□□ -2.37
NPIPA3F8WFD2 RNA5SP268-201ENST00000516828 124 ntBASIC0.27□□□□□ -2.37
NPIPA3F8WFD2 RNU2-60P-201ENST00000517290 128 ntBASIC0.27□□□□□ -2.37
NPIPA3F8WFD2 RNU4-58P-201ENST00000363192 141 ntBASIC0.26□□□□□ -2.37
NPIPA3F8WFD2 RNU6-508P-201ENST00000363231 103 ntBASIC0.26□□□□□ -2.37
NPIPA3F8WFD2 RNU6-1229P-201ENST00000364295 107 ntBASIC0.26□□□□□ -2.37
NPIPA3F8WFD2 Y_RNA.552-201ENST00000384665 112 ntBASIC0.26□□□□□ -2.37
NPIPA3F8WFD2 Y_RNA.584-201ENST00000391090 114 ntBASIC0.26□□□□□ -2.37
NPIPA3F8WFD2 SUMO1P3-201ENST00000439961 304 ntBASIC0.26□□□□□ -2.37
NPIPA3F8WFD2 RNU6-861P-201ENST00000516745 106 ntBASIC0.26□□□□□ -2.37
NPIPA3F8WFD2 DNAJC19P2-201ENST00000593340 302 ntBASIC0.26□□□□□ -2.37
NPIPA3F8WFD2 AC105081.1-201ENST00000617727 106 ntBASIC0.26□□□□□ -2.37
NPIPA3F8WFD2 AC108866.1-201ENST00000503073 2339 ntTSL 5 BASIC0.25□□□□□ -2.37
NPIPA3F8WFD2 Y_RNA.30-201ENST00000362572 97 ntBASIC0.25□□□□□ -2.37
NPIPA3F8WFD2 RNA5SP62-201ENST00000363457 110 ntBASIC0.25□□□□□ -2.37
NPIPA3F8WFD2 RNY1P11-201ENST00000363759 113 ntBASIC0.25□□□□□ -2.37
NPIPA3F8WFD2 RNU6-1327P-201ENST00000365302 105 ntBASIC0.25□□□□□ -2.37
Retrieved 100 of 98,524 protein–RNA pairs in 178.9 ms