Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 Y_RNA.649-201ENST00000459077 103 ntBASIC1.15□□□□□ -2.23
SOX2P48431 RNU7-6P-201ENST00000516845 62 ntBASIC1.15□□□□□ -2.23
SOX2P48431 RNU7-35P-201ENST00000517174 62 ntBASIC1.15□□□□□ -2.23
SOX2P48431 AC019288.1-201ENST00000557918 224 ntBASIC1.15□□□□□ -2.23
SOX2P48431 AC023827.1-201ENST00000569247 97 ntBASIC1.15□□□□□ -2.23
SOX2P48431 MIR4498-201ENST00000577599 66 ntBASIC1.15□□□□□ -2.23
SOX2P48431 AC106800.4-201ENST00000614905 153 ntBASIC1.15□□□□□ -2.23
SOX2P48431 AC012676.2-201ENST00000619258 186 ntBASIC1.15□□□□□ -2.23
SOX2P48431 MIR378A-201ENST00000362177 66 ntBASIC1.14□□□□□ -2.23
SOX2P48431 MIR563-201ENST00000385080 79 ntBASIC1.14□□□□□ -2.23
SOX2P48431 AC063976.4-201ENST00000421971 163 ntBASIC1.14□□□□□ -2.23
SOX2P48431 Y_RNA.4-201ENST00000362333 112 ntBASIC1.13□□□□□ -2.23
SOX2P48431 RNU6-834P-201ENST00000362367 110 ntBASIC1.13□□□□□ -2.23
SOX2P48431 RNU1-17P-201ENST00000363022 152 ntBASIC1.13□□□□□ -2.23
SOX2P48431 RNY1P10-201ENST00000363268 113 ntBASIC1.13□□□□□ -2.23
SOX2P48431 AC002429.1-201ENST00000437672 148 ntBASIC1.13□□□□□ -2.23
SOX2P48431 RNU1-123P-201ENST00000458950 160 ntBASIC1.13□□□□□ -2.23
SOX2P48431 RNU7-79P-201ENST00000516082 62 ntBASIC1.13□□□□□ -2.23
SOX2P48431 AC141846.1-201ENST00000568348 142 ntBASIC1.13□□□□□ -2.23
SOX2P48431 MTND5P34-201ENST00000568888 325 ntBASIC1.13□□□□□ -2.23
SOX2P48431 snoU13.31-201ENST00000607291 104 ntBASIC1.13□□□□□ -2.23
SOX2P48431 AC027335.2-201ENST00000624030 375 ntBASIC1.13□□□□□ -2.23
SOX2P48431 UGP2-230ENST00000626380 276 ntTSL 5 BASIC1.13□□□□□ -2.23
SOX2P48431 ZGRF1-202ENST00000309071 3347 ntTSL 1 (best) BASIC1.12□□□□□ -2.23
SOX2P48431 SNORA25.8-201ENST00000364831 128 ntBASIC1.12□□□□□ -2.23
SOX2P48431 RNU6-939P-201ENST00000384634 107 ntBASIC1.12□□□□□ -2.23
SOX2P48431 MT-TF-201ENST00000387314 71 ntBASIC1.12□□□□□ -2.23
SOX2P48431 RNU6-735P-201ENST00000410612 107 ntBASIC1.12□□□□□ -2.23
SOX2P48431 RPL39P25-201ENST00000449384 154 ntBASIC1.12□□□□□ -2.23
SOX2P48431 MIR18B-201ENST00000454574 71 ntBASIC1.12□□□□□ -2.23
SOX2P48431 RNU1-92P-201ENST00000517017 135 ntBASIC1.12□□□□□ -2.23
SOX2P48431 MIR4303-201ENST00000581299 66 ntBASIC1.12□□□□□ -2.23
SOX2P48431 LRRIQ1-202ENST00000393217 5394 ntAPPRIS P1 TSL 1 (best) BASIC1.11□□□□□ -2.23
SOX2P48431 MIR30D-201ENST00000362283 70 ntBASIC1.11□□□□□ -2.23
SOX2P48431 Y_RNA.273-201ENST00000364703 102 ntBASIC1.11□□□□□ -2.23
SOX2P48431 RNU6-1056P-201ENST00000383996 107 ntBASIC1.11□□□□□ -2.23
SOX2P48431 RNU6-476P-201ENST00000384726 107 ntBASIC1.11□□□□□ -2.23
SOX2P48431 MIR548D2-201ENST00000384955 97 ntBASIC1.11□□□□□ -2.23
SOX2P48431 MIR548A1-201ENST00000385041 97 ntBASIC1.11□□□□□ -2.23
SOX2P48431 SNORA67.5-201ENST00000391036 107 ntBASIC1.11□□□□□ -2.23
SOX2P48431 RNU6ATAC42P-201ENST00000408637 95 ntBASIC1.11□□□□□ -2.23
SOX2P48431 RNU6-994P-201ENST00000410507 111 ntBASIC1.11□□□□□ -2.23
SOX2P48431 RNU6-1064P-201ENST00000410626 104 ntBASIC1.11□□□□□ -2.23
SOX2P48431 SNORA4-201ENST00000584302 138 ntBASIC1.11□□□□□ -2.23
SOX2P48431 uc_338.6-201ENST00000613544 171 ntBASIC1.11□□□□□ -2.23
SOX2P48431 CEP290-201ENST00000309041 7616 ntAPPRIS ALT1 TSL 5 BASIC1.1□□□□□ -2.23
SOX2P48431 RNY1P13-201ENST00000365030 105 ntBASIC1.1□□□□□ -2.23
SOX2P48431 RNU6-1144P-201ENST00000384247 104 ntBASIC1.1□□□□□ -2.23
SOX2P48431 Y_RNA.629-201ENST00000411368 105 ntBASIC1.1□□□□□ -2.23
SOX2P48431 AL031386.1-201ENST00000411940 142 ntTSL 5 BASIC1.1□□□□□ -2.23
SOX2P48431 AC004223.1-201ENST00000479840 271 ntBASIC1.1□□□□□ -2.23
SOX2P48431 AC007012.1-201ENST00000567192 175 ntBASIC1.1□□□□□ -2.23
SOX2P48431 FAM71BP1-201ENST00000604431 523 ntBASIC1.1□□□□□ -2.23
SOX2P48431 GNAS-AS1_4.1-201ENST00000616546 112 ntBASIC1.1□□□□□ -2.23
SOX2P48431 AC087741.2-201ENST00000619415 172 ntBASIC1.1□□□□□ -2.23
SOX2P48431 C9orf84-201ENST00000318737 4661 ntAPPRIS P3 TSL 1 (best) BASIC1.1□□□□□ -2.23
SOX2P48431 ZNF209P-201ENST00000593450 2304 ntBASIC1.09□□□□□ -2.23
SOX2P48431 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC1.09□□□□□ -2.23
SOX2P48431 SNORD115-19-201ENST00000363098 82 ntBASIC1.09□□□□□ -2.23
SOX2P48431 SNORD115-18-201ENST00000363293 82 ntBASIC1.09□□□□□ -2.23
SOX2P48431 SNORD115-17-201ENST00000364612 82 ntBASIC1.09□□□□□ -2.23
SOX2P48431 RNU6-934P-201ENST00000365154 107 ntBASIC1.09□□□□□ -2.23
SOX2P48431 RNU6-949P-201ENST00000384040 107 ntBASIC1.09□□□□□ -2.23
SOX2P48431 SNORD116-21-201ENST00000384507 92 ntBASIC1.09□□□□□ -2.23
SOX2P48431 ZNF468-202ENST00000396409 384 ntTSL 5 BASIC1.09□□□□□ -2.23
SOX2P48431 AC108667.1-201ENST00000428618 249 ntBASIC1.09□□□□□ -2.23
SOX2P48431 MIR1270-201ENST00000459320 83 ntBASIC1.09□□□□□ -2.23
SOX2P48431 RNU7-40P-201ENST00000516397 64 ntBASIC1.09□□□□□ -2.23
SOX2P48431 MIR4781-201ENST00000585250 76 ntBASIC1.09□□□□□ -2.23
SOX2P48431 RNU6-94P-201ENST00000607728 107 ntBASIC1.09□□□□□ -2.23
SOX2P48431 RNU6-1290P-201ENST00000362957 109 ntBASIC1.08□□□□□ -2.24
SOX2P48431 Y_RNA.362-201ENST00000365518 110 ntBASIC1.08□□□□□ -2.24
SOX2P48431 RNU6-616P-201ENST00000384353 107 ntBASIC1.08□□□□□ -2.24
SOX2P48431 RNU6-880P-201ENST00000384526 107 ntBASIC1.08□□□□□ -2.24
SOX2P48431 MIR19B1-201ENST00000384829 87 ntBASIC1.08□□□□□ -2.24
SOX2P48431 SNORA17.3-201ENST00000391159 129 ntBASIC1.08□□□□□ -2.24
SOX2P48431 RNU6ATAC6P-201ENST00000408132 126 ntBASIC1.08□□□□□ -2.24
SOX2P48431 MIR1287-201ENST00000408492 90 ntBASIC1.08□□□□□ -2.24
SOX2P48431 SNORD83.1-201ENST00000411362 77 ntBASIC1.08□□□□□ -2.24
SOX2P48431 AC067940.1-201ENST00000458411 300 ntBASIC1.08□□□□□ -2.24
SOX2P48431 snoU13.21-201ENST00000459368 105 ntBASIC1.08□□□□□ -2.24
SOX2P48431 SNORD67.1-201ENST00000516618 108 ntBASIC1.08□□□□□ -2.24
SOX2P48431 MIR4679-2-201ENST00000578358 77 ntBASIC1.08□□□□□ -2.24
SOX2P48431 SNORD114-10-201ENST00000363409 72 ntBASIC1.07□□□□□ -2.24
SOX2P48431 Y_RNA.226-201ENST00000364337 114 ntBASIC1.07□□□□□ -2.24
SOX2P48431 Y_RNA.344-201ENST00000365381 112 ntBASIC1.07□□□□□ -2.24
SOX2P48431 MIR618-201ENST00000385287 98 ntBASIC1.07□□□□□ -2.24
SOX2P48431 PNRC2-204ENST00000579103 171 ntTSL 2 BASIC1.07□□□□□ -2.24
SOX2P48431 AL512598.1-201ENST00000610158 273 ntBASIC1.07□□□□□ -2.24
SOX2P48431 hsa-mir-4536-1.1-201ENST00000636519 88 ntBASIC1.07□□□□□ -2.24
SOX2P48431 IL6ST-203ENST00000381287 8667 ntTSL 5 BASIC1.07□□□□□ -2.24
SOX2P48431 AC023934.1-201ENST00000574529 2389 ntBASIC1.06□□□□□ -2.24
SOX2P48431 AL589743.1-201ENST00000551932 2712 ntBASIC1.06□□□□□ -2.24
SOX2P48431 SNORA25.9-201ENST00000365087 128 ntBASIC1.06□□□□□ -2.24
SOX2P48431 SNORA40.6-201ENST00000391153 128 ntBASIC1.06□□□□□ -2.24
SOX2P48431 AC079760.1-201ENST00000456952 202 ntTSL 3 BASIC1.06□□□□□ -2.24
SOX2P48431 RNU7-137P-201ENST00000516788 62 ntBASIC1.06□□□□□ -2.24
SOX2P48431 RNA5SP404-201ENST00000517118 132 ntBASIC1.06□□□□□ -2.24
SOX2P48431 MIR4771-2-201ENST00000577758 74 ntBASIC1.06□□□□□ -2.24
SOX2P48431 MIR4771-1-201ENST00000582617 74 ntBASIC1.06□□□□□ -2.24
Retrieved 100 of 98,524 protein–RNA pairs in 119.3 ms