Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 snoU13.21-201ENST00000459368 105 ntBASIC0.93□□□□□ -2.26
PTPN9P43378 RNU2-35P-201ENST00000516446 142 ntBASIC0.93□□□□□ -2.26
PTPN9P43378 Y_RNA.703-201ENST00000516846 111 ntBASIC0.93□□□□□ -2.26
PTPN9P43378 AC004812.1-201ENST00000540773 146 ntBASIC0.93□□□□□ -2.26
PTPN9P43378 AC141846.1-201ENST00000568348 142 ntBASIC0.93□□□□□ -2.26
PTPN9P43378 SNORA4-201ENST00000584302 138 ntBASIC0.93□□□□□ -2.26
PTPN9P43378 AC092071.1-201ENST00000597260 549 ntTSL 5 BASIC0.93□□□□□ -2.26
PTPN9P43378 MIR6857-201ENST00000613267 93 ntBASIC0.93□□□□□ -2.26
PTPN9P43378 AL137067.1-201ENST00000615933 120 ntBASIC0.93□□□□□ -2.26
PTPN9P43378 MIR6767-201ENST00000637302 66 ntBASIC0.93□□□□□ -2.26
PTPN9P43378 Y_RNA.171-201ENST00000363760 102 ntBASIC0.92□□□□□ -2.26
PTPN9P43378 Y_RNA.298-201ENST00000364960 107 ntBASIC0.92□□□□□ -2.26
PTPN9P43378 Y_RNA.366-201ENST00000365540 102 ntBASIC0.92□□□□□ -2.26
PTPN9P43378 SNORA18-201ENST00000384416 132 ntBASIC0.92□□□□□ -2.26
PTPN9P43378 SNORD83.1-201ENST00000411362 77 ntBASIC0.92□□□□□ -2.26
PTPN9P43378 RNU7-35P-201ENST00000517174 62 ntBASIC0.92□□□□□ -2.26
PTPN9P43378 OMD-201ENST00000375550 2449 ntAPPRIS P1 TSL 1 (best) BASIC0.91□□□□□ -2.26
PTPN9P43378 Y_RNA.114-201ENST00000363265 113 ntBASIC0.91□□□□□ -2.26
PTPN9P43378 RNU6-949P-201ENST00000384040 107 ntBASIC0.91□□□□□ -2.26
PTPN9P43378 MIR100-201ENST00000385259 80 ntBASIC0.91□□□□□ -2.26
PTPN9P43378 SNORA40-201ENST00000388090 126 ntBASIC0.91□□□□□ -2.26
PTPN9P43378 AL512326.2-201ENST00000426359 151 ntBASIC0.91□□□□□ -2.26
PTPN9P43378 RNU7-123P-201ENST00000515911 60 ntBASIC0.91□□□□□ -2.26
PTPN9P43378 MIR4771-2-201ENST00000577758 74 ntBASIC0.91□□□□□ -2.26
PTPN9P43378 MIR4771-1-201ENST00000582617 74 ntBASIC0.91□□□□□ -2.26
PTPN9P43378 AC108081.1-201ENST00000604358 221 ntBASIC0.91□□□□□ -2.26
PTPN9P43378 ZFAT-AS1_2.1-201ENST00000613742 201 ntBASIC0.91□□□□□ -2.26
PTPN9P43378 MIR96-201ENST00000362288 78 ntBASIC0.9□□□□□ -2.27
PTPN9P43378 Y_RNA.470-201ENST00000384307 117 ntBASIC0.9□□□□□ -2.27
PTPN9P43378 MIR499A-201ENST00000384903 122 ntBASIC0.9□□□□□ -2.27
PTPN9P43378 SNORD89-201ENST00000390981 114 ntBASIC0.9□□□□□ -2.27
PTPN9P43378 RNU7-185P-201ENST00000459215 60 ntBASIC0.9□□□□□ -2.27
PTPN9P43378 AC092892.1-201ENST00000496067 327 ntTSL 5 BASIC0.9□□□□□ -2.27
PTPN9P43378 RNA5SP33-201ENST00000516687 98 ntBASIC0.9□□□□□ -2.27
PTPN9P43378 FAM71BP1-201ENST00000604431 523 ntBASIC0.9□□□□□ -2.27
PTPN9P43378 MIR373-201ENST00000362273 69 ntBASIC0.89□□□□□ -2.27
PTPN9P43378 RNU6-342P-201ENST00000384521 104 ntBASIC0.89□□□□□ -2.27
PTPN9P43378 MIR125B2-201ENST00000385128 89 ntBASIC0.89□□□□□ -2.27
PTPN9P43378 MIR1257-201ENST00000408490 117 ntBASIC0.89□□□□□ -2.27
PTPN9P43378 MTND4LP9-201ENST00000427694 174 ntBASIC0.89□□□□□ -2.27
PTPN9P43378 AC012668.1-201ENST00000457625 228 ntTSL 3 BASIC0.89□□□□□ -2.27
PTPN9P43378 RNU6-977P-201ENST00000516411 103 ntBASIC0.89□□□□□ -2.27
PTPN9P43378 MIR3973-201ENST00000579824 107 ntBASIC0.89□□□□□ -2.27
PTPN9P43378 MIR4676-201ENST00000583078 72 ntBASIC0.89□□□□□ -2.27
PTPN9P43378 AC023934.1-201ENST00000574529 2389 ntBASIC0.88□□□□□ -2.27
PTPN9P43378 Y_RNA.191-201ENST00000363972 113 ntBASIC0.88□□□□□ -2.27
PTPN9P43378 RNU1-93P-201ENST00000364704 169 ntBASIC0.88□□□□□ -2.27
PTPN9P43378 MIR613-201ENST00000385248 95 ntBASIC0.88□□□□□ -2.27
PTPN9P43378 SNORD105-201ENST00000386910 85 ntBASIC0.88□□□□□ -2.27
PTPN9P43378 RNU6ATAC42P-201ENST00000408637 95 ntBASIC0.88□□□□□ -2.27
PTPN9P43378 Y_RNA.617-201ENST00000410920 90 ntBASIC0.88□□□□□ -2.27
PTPN9P43378 AL158147.1-201ENST00000443970 75 ntBASIC0.88□□□□□ -2.27
PTPN9P43378 RNU5E-3P-201ENST00000515913 68 ntBASIC0.88□□□□□ -2.27
PTPN9P43378 RNU6-346P-201ENST00000516288 111 ntBASIC0.88□□□□□ -2.27
PTPN9P43378 RNY4P20-201ENST00000516678 93 ntBASIC0.88□□□□□ -2.27
PTPN9P43378 MIR4804-201ENST00000581683 73 ntBASIC0.88□□□□□ -2.27
PTPN9P43378 RNY1P13-201ENST00000365030 105 ntBASIC0.87□□□□□ -2.27
PTPN9P43378 MIR539-201ENST00000365690 78 ntBASIC0.87□□□□□ -2.27
PTPN9P43378 IL6ST-202ENST00000381286 201 ntTSL 1 (best) BASIC0.87□□□□□ -2.27
PTPN9P43378 RNU6-1237P-201ENST00000384777 107 ntBASIC0.87□□□□□ -2.27
PTPN9P43378 MIR938-201ENST00000401216 83 ntBASIC0.87□□□□□ -2.27
PTPN9P43378 RNU6-257P-201ENST00000410238 98 ntBASIC0.87□□□□□ -2.27
PTPN9P43378 RNU4-69P-201ENST00000410677 143 ntBASIC0.87□□□□□ -2.27
PTPN9P43378 RNA5SP136-201ENST00000410906 107 ntBASIC0.87□□□□□ -2.27
PTPN9P43378 RNA5SP247-201ENST00000411181 105 ntBASIC0.87□□□□□ -2.27
PTPN9P43378 AL138808.1-201ENST00000441428 371 ntTSL 2 BASIC0.87□□□□□ -2.27
PTPN9P43378 RPL39P25-201ENST00000449384 154 ntBASIC0.87□□□□□ -2.27
PTPN9P43378 RN7SKP19-201ENST00000516016 252 ntBASIC0.87□□□□□ -2.27
PTPN9P43378 AC020891.4-201ENST00000605745 93 ntBASIC0.87□□□□□ -2.27
PTPN9P43378 5S_rRNA.15-201ENST00000611169 127 ntBASIC0.87□□□□□ -2.27
PTPN9P43378 RMST_2.1-201ENST00000617263 136 ntBASIC0.87□□□□□ -2.27
PTPN9P43378 SNORD114-2-201ENST00000363953 78 ntBASIC0.86□□□□□ -2.27
PTPN9P43378 SNORD114-22-201ENST00000365423 72 ntBASIC0.86□□□□□ -2.27
PTPN9P43378 MIR608-201ENST00000384820 100 ntBASIC0.86□□□□□ -2.27
PTPN9P43378 RNU7-56P-201ENST00000458744 62 ntBASIC0.86□□□□□ -2.27
PTPN9P43378 RNU7-79P-201ENST00000516082 62 ntBASIC0.86□□□□□ -2.27
PTPN9P43378 RNU6-351P-201ENST00000516097 100 ntBASIC0.86□□□□□ -2.27
PTPN9P43378 MIR4698-201ENST00000577795 80 ntBASIC0.86□□□□□ -2.27
PTPN9P43378 MIR4452-201ENST00000583004 71 ntBASIC0.86□□□□□ -2.27
PTPN9P43378 MIR548AE2-201ENST00000583456 67 ntBASIC0.86□□□□□ -2.27
PTPN9P43378 SNORD92-201ENST00000585078 85 ntBASIC0.86□□□□□ -2.27
PTPN9P43378 AL353765.1-201ENST00000605514 183 ntBASIC0.86□□□□□ -2.27
PTPN9P43378 Y_RNA.226-201ENST00000364337 114 ntBASIC0.85□□□□□ -2.27
PTPN9P43378 MIR146A-201ENST00000385201 99 ntBASIC0.85□□□□□ -2.27
PTPN9P43378 U8.15-201ENST00000390947 134 ntBASIC0.85□□□□□ -2.27
PTPN9P43378 Y_RNA.586-201ENST00000391146 98 ntBASIC0.85□□□□□ -2.27
PTPN9P43378 IGKV1-22-201ENST00000524313 326 ntBASIC0.85□□□□□ -2.27
PTPN9P43378 MIR3133-201ENST00000583157 78 ntBASIC0.85□□□□□ -2.27
PTPN9P43378 AC211469.2-201ENST00000605461 205 ntBASIC0.85□□□□□ -2.27
PTPN9P43378 RPS27-201ENST00000368567 350 ntAPPRIS P1 TSL 1 (best) BASIC0.84□□□□□ -2.27
PTPN9P43378 MIR520F-201ENST00000384824 87 ntBASIC0.84□□□□□ -2.27
PTPN9P43378 MIR1287-201ENST00000408492 90 ntBASIC0.84□□□□□ -2.27
PTPN9P43378 RNA5SP272-201ENST00000516095 111 ntBASIC0.84□□□□□ -2.27
PTPN9P43378 RNU6-704P-201ENST00000364162 103 ntBASIC0.83□□□□□ -2.28
PTPN9P43378 RNU6-1335P-201ENST00000365426 107 ntBASIC0.83□□□□□ -2.28
PTPN9P43378 SNORD93-201ENST00000408813 74 ntBASIC0.83□□□□□ -2.28
PTPN9P43378 RNU6-447P-201ENST00000410293 104 ntBASIC0.83□□□□□ -2.28
PTPN9P43378 RNU6-1118P-201ENST00000410382 104 ntBASIC0.83□□□□□ -2.28
PTPN9P43378 RNU6-1076P-201ENST00000410397 104 ntBASIC0.83□□□□□ -2.28
PTPN9P43378 RNU6-355P-201ENST00000410427 104 ntBASIC0.83□□□□□ -2.28
Retrieved 100 of 98,524 protein–RNA pairs in 165 ms