Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 MIR8087-201ENST00000612745 78 ntBASIC0.07□□□□□ -2.4
SHMT2P34897 MIR6718-201ENST00000616153 80 ntBASIC0.07□□□□□ -2.4
SHMT2P34897 MIR6755-201ENST00000619993 66 ntBASIC0.07□□□□□ -2.4
SHMT2P34897 RNU6-1099P-201ENST00000363533 107 ntBASIC0.06□□□□□ -2.4
SHMT2P34897 Y_RNA.292-201ENST00000364904 97 ntBASIC0.06□□□□□ -2.4
SHMT2P34897 Y_RNA.396-201ENST00000383949 103 ntBASIC0.06□□□□□ -2.4
SHMT2P34897 RNU6-578P-201ENST00000390980 103 ntBASIC0.06□□□□□ -2.4
SHMT2P34897 AL358176.2-201ENST00000425769 204 ntBASIC0.06□□□□□ -2.4
SHMT2P34897 AC069271.1-201ENST00000445577 156 ntBASIC0.06□□□□□ -2.4
SHMT2P34897 SNORA25.16-201ENST00000516741 121 ntBASIC0.06□□□□□ -2.4
SHMT2P34897 RNU6-1258P-201ENST00000516911 111 ntBASIC0.06□□□□□ -2.4
SHMT2P34897 RNA5SP47-201ENST00000517230 109 ntBASIC0.06□□□□□ -2.4
SHMT2P34897 Y_RNA.757-201ENST00000578934 114 ntBASIC0.06□□□□□ -2.4
SHMT2P34897 Y_RNA.277-201ENST00000364754 102 ntBASIC0.05□□□□□ -2.4
SHMT2P34897 RNU6-535P-201ENST00000384722 107 ntBASIC0.05□□□□□ -2.4
SHMT2P34897 RNU6-1086P-201ENST00000410930 100 ntBASIC0.05□□□□□ -2.4
SHMT2P34897 RNU5E-9P-201ENST00000411164 104 ntBASIC0.05□□□□□ -2.4
SHMT2P34897 Y_RNA.697-201ENST00000516776 113 ntBASIC0.05□□□□□ -2.4
SHMT2P34897 Y_RNA.205-201ENST00000364128 113 ntBASIC0.04□□□□□ -2.4
SHMT2P34897 RNU6-1229P-201ENST00000364295 107 ntBASIC0.04□□□□□ -2.4
SHMT2P34897 Y_RNA.422-201ENST00000384054 114 ntBASIC0.04□□□□□ -2.4
SHMT2P34897 SNORD28-201ENST00000384706 75 ntBASIC0.04□□□□□ -2.4
SHMT2P34897 RNA5SP227-201ENST00000516184 113 ntBASIC0.04□□□□□ -2.4
SHMT2P34897 RNY3P16-201ENST00000516338 101 ntBASIC0.04□□□□□ -2.4
SHMT2P34897 AP003072.1-201ENST00000531740 145 ntBASIC0.04□□□□□ -2.4
SHMT2P34897 MIR4639-201ENST00000584938 69 ntBASIC0.04□□□□□ -2.4
SHMT2P34897 MTND5P32-201ENST00000560711 1802 ntBASIC0.03□□□□□ -2.4
SHMT2P34897 Y_RNA.54-201ENST00000362766 105 ntBASIC0.03□□□□□ -2.4
SHMT2P34897 Y_RNA.171-201ENST00000363760 102 ntBASIC0.03□□□□□ -2.4
SHMT2P34897 Y_RNA.308-201ENST00000365043 101 ntBASIC0.03□□□□□ -2.4
SHMT2P34897 Y_RNA.466-201ENST00000384294 113 ntBASIC0.03□□□□□ -2.4
SHMT2P34897 Y_RNA.515-201ENST00000384535 112 ntBASIC0.03□□□□□ -2.4
SHMT2P34897 RNU6-1160P-201ENST00000384546 104 ntBASIC0.03□□□□□ -2.4
SHMT2P34897 RNU2-38P-201ENST00000410856 79 ntBASIC0.03□□□□□ -2.4
SHMT2P34897 RNU6-893P-201ENST00000458841 100 ntBASIC0.03□□□□□ -2.4
SHMT2P34897 RNU2-4P-201ENST00000606190 192 ntBASIC0.03□□□□□ -2.4
SHMT2P34897 MIR6779-201ENST00000617283 64 ntBASIC0.03□□□□□ -2.4
SHMT2P34897 AC091304.10-201ENST00000641554 121 ntBASIC0.03□□□□□ -2.4
SHMT2P34897 SNORA9.1-201ENST00000362412 131 ntBASIC0.02□□□□□ -2.41
SHMT2P34897 SNORD114-9-201ENST00000364370 72 ntBASIC0.02□□□□□ -2.41
SHMT2P34897 Y_RNA.258-201ENST00000364613 105 ntBASIC0.02□□□□□ -2.41
SHMT2P34897 RNU6-1126P-201ENST00000384002 107 ntBASIC0.02□□□□□ -2.41
SHMT2P34897 RNU6-643P-201ENST00000384018 107 ntBASIC0.02□□□□□ -2.41
SHMT2P34897 RNU6-187P-201ENST00000384139 106 ntBASIC0.02□□□□□ -2.41
SHMT2P34897 RNY1P6-201ENST00000384193 109 ntBASIC0.02□□□□□ -2.41
SHMT2P34897 TRAJ1-201ENST00000390536 62 ntAPPRIS P1 BASIC0.02□□□□□ -2.41
SHMT2P34897 RNU6-493P-201ENST00000391321 108 ntBASIC0.02□□□□□ -2.41
SHMT2P34897 RNA5SP330-201ENST00000517096 96 ntBASIC0.02□□□□□ -2.41
SHMT2P34897 RNU7-35P-201ENST00000517174 62 ntBASIC0.02□□□□□ -2.41
SHMT2P34897 RNU6-716P-201ENST00000365621 103 ntBASIC0.01□□□□□ -2.41
SHMT2P34897 SNORA2A-201ENST00000383885 135 ntBASIC0.01□□□□□ -2.41
SHMT2P34897 RNA5SP63-201ENST00000391225 112 ntBASIC0.01□□□□□ -2.41
SHMT2P34897 PCNPP3-201ENST00000393579 471 ntBASIC0.01□□□□□ -2.41
SHMT2P34897 MIR548H2-201ENST00000408874 88 ntBASIC0.01□□□□□ -2.41
SHMT2P34897 RNA5SP144-201ENST00000410846 116 ntBASIC0.01□□□□□ -2.41
SHMT2P34897 AC023051.1-201ENST00000414098 876 ntTSL 5 BASIC0.01□□□□□ -2.41
SHMT2P34897 AC103879.1-201ENST00000503093 255 ntTSL 2 BASIC0.01□□□□□ -2.41
SHMT2P34897 RNU6-1194P-201ENST00000516208 104 ntBASIC0.01□□□□□ -2.41
SHMT2P34897 MIR4667-201ENST00000578933 66 ntBASIC0.01□□□□□ -2.41
SHMT2P34897 MIR4768-201ENST00000585270 74 ntBASIC0.01□□□□□ -2.41
SHMT2P34897 AC006504.6-201ENST00000590142 199 ntBASIC0.01□□□□□ -2.41
SHMT2P34897 TUG1_4.1-201ENST00000619464 181 ntBASIC0.01□□□□□ -2.41
SHMT2P34897 Y_RNA.121-201ENST00000363309 113 ntBASIC0□□□□□ -2.41
SHMT2P34897 Y_RNA.326-201ENST00000365176 113 ntBASIC0□□□□□ -2.41
SHMT2P34897 RNY4P28-201ENST00000365281 93 ntBASIC0□□□□□ -2.41
SHMT2P34897 Y_RNA.423-201ENST00000384057 113 ntBASIC0□□□□□ -2.41
SHMT2P34897 Y_RNA.470-201ENST00000384307 117 ntBASIC0□□□□□ -2.41
SHMT2P34897 RNU7-79P-201ENST00000516082 62 ntBASIC0□□□□□ -2.41
SHMT2P34897 RNU6-531P-201ENST00000516694 104 ntBASIC0□□□□□ -2.41
SHMT2P34897 MRPS18CP4-201ENST00000535821 231 ntBASIC0□□□□□ -2.41
SHMT2P34897 AL117187.1-201ENST00000555482 181 ntBASIC0□□□□□ -2.41
SHMT2P34897 MIR4308-201ENST00000580634 81 ntBASIC0□□□□□ -2.41
SHMT2P34897 RNU1-29P-201ENST00000606574 126 ntBASIC0□□□□□ -2.41
SHMT2P34897 AC244669.1-204ENST00000621564 178 ntBASIC0□□□□□ -2.41
SHMT2P34897 MIR371B-201ENST00000638082 66 ntBASIC0□□□□□ -2.41
SHMT2P34897 MIR411-201ENST00000362239 96 ntBASIC-0.01□□□□□ -2.41
SHMT2P34897 Y_RNA.11-201ENST00000362375 109 ntBASIC-0.01□□□□□ -2.41
SHMT2P34897 RNA5SP214-201ENST00000363378 118 ntBASIC-0.01□□□□□ -2.41
SHMT2P34897 Y_RNA.562-201ENST00000384695 113 ntBASIC-0.01□□□□□ -2.41
SHMT2P34897 MIR548H3-201ENST00000408771 118 ntBASIC-0.01□□□□□ -2.41
SHMT2P34897 MIR1197-201ENST00000408818 88 ntBASIC-0.01□□□□□ -2.41
SHMT2P34897 MTND1P19-201ENST00000511780 315 ntBASIC-0.01□□□□□ -2.41
SHMT2P34897 Y_RNA.797-201ENST00000515977 94 ntBASIC-0.01□□□□□ -2.41
SHMT2P34897 RNU6-1232P-201ENST00000516299 86 ntBASIC-0.01□□□□□ -2.41
SHMT2P34897 AC104408.1-201ENST00000605241 170 ntBASIC-0.01□□□□□ -2.41
SHMT2P34897 CLRN1-AS1.1-201ENST00000615643 79 ntBASIC-0.01□□□□□ -2.41
SHMT2P34897 HOTAIRM1_4.1-201ENST00000617934 102 ntBASIC-0.01□□□□□ -2.41
SHMT2P34897 RNA5SP133-201ENST00000363368 119 ntBASIC-0.02□□□□□ -2.41
SHMT2P34897 RNA5SP245-201ENST00000364239 121 ntBASIC-0.02□□□□□ -2.41
SHMT2P34897 RNU6-1336P-201ENST00000383886 109 ntBASIC-0.02□□□□□ -2.41
SHMT2P34897 Y_RNA.571-201ENST00000384753 98 ntBASIC-0.02□□□□□ -2.41
SHMT2P34897 MIR7-2-201ENST00000384970 110 ntBASIC-0.02□□□□□ -2.41
SHMT2P34897 SNORD127-201ENST00000458892 86 ntBASIC-0.02□□□□□ -2.41
SHMT2P34897 RNU6-848P-201ENST00000515948 107 ntBASIC-0.02□□□□□ -2.41
SHMT2P34897 RNU6-617P-201ENST00000516147 107 ntBASIC-0.02□□□□□ -2.41
SHMT2P34897 RNU6-473P-201ENST00000516164 107 ntBASIC-0.02□□□□□ -2.41
SHMT2P34897 RNU6-1049P-201ENST00000516414 107 ntBASIC-0.02□□□□□ -2.41
SHMT2P34897 DEFB131B-201ENST00000530210 213 ntAPPRIS P1 TSL 1 (best) BASIC-0.02□□□□□ -2.41
SHMT2P34897 MIR4290-201ENST00000583807 95 ntBASIC-0.02□□□□□ -2.41
SHMT2P34897 Y_RNA.52-201ENST00000362760 96 ntBASIC-0.03□□□□□ -2.41
Retrieved 100 of 98,524 protein–RNA pairs in 172.1 ms