Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 RNU7-62P-201ENST00000458856 62 ntBASIC1.54□□□□□ -2.16
CBX4O00257 snoU13.2-201ENST00000459201 104 ntBASIC1.54□□□□□ -2.16
CBX4O00257 AC023790.1-201ENST00000482174 347 ntBASIC1.54□□□□□ -2.16
CBX4O00257 RNU7-6P-201ENST00000516845 62 ntBASIC1.54□□□□□ -2.16
CBX4O00257 hsa-mir-4536-1.1-201ENST00000636519 88 ntBASIC1.54□□□□□ -2.16
CBX4O00257 SNORA32-201ENST00000384072 121 ntBASIC1.53□□□□□ -2.16
CBX4O00257 ZNF468-202ENST00000396409 384 ntTSL 5 BASIC1.53□□□□□ -2.16
CBX4O00257 RNU1-92P-201ENST00000517017 135 ntBASIC1.53□□□□□ -2.16
CBX4O00257 SNORA31.24-201ENST00000517232 57 ntBASIC1.53□□□□□ -2.16
CBX4O00257 KIAA1107-201ENST00000370378 4622 ntTSL 5 BASIC1.52□□□□□ -2.17
CBX4O00257 UHRF1BP1L-203ENST00000545232 4088 ntTSL 1 (best) BASIC1.52□□□□□ -2.17
CBX4O00257 RNU6-1290P-201ENST00000362957 109 ntBASIC1.52□□□□□ -2.17
CBX4O00257 SNORA7.1-201ENST00000363750 139 ntBASIC1.52□□□□□ -2.17
CBX4O00257 RNU6-1144P-201ENST00000384247 104 ntBASIC1.52□□□□□ -2.17
CBX4O00257 RNU6-342P-201ENST00000384521 104 ntBASIC1.52□□□□□ -2.17
CBX4O00257 SNORA2B-201ENST00000384583 137 ntBASIC1.52□□□□□ -2.17
CBX4O00257 MIR1276-201ENST00000408707 83 ntBASIC1.52□□□□□ -2.17
CBX4O00257 AL354695.1-201ENST00000427935 228 ntBASIC1.52□□□□□ -2.17
CBX4O00257 UGP2-230ENST00000626380 276 ntTSL 5 BASIC1.52□□□□□ -2.17
CBX4O00257 Y_RNA.168-201ENST00000363740 102 ntBASIC1.51□□□□□ -2.17
CBX4O00257 Y_RNA.363-201ENST00000365529 113 ntBASIC1.51□□□□□ -2.17
CBX4O00257 RNU6-997P-201ENST00000384725 107 ntBASIC1.51□□□□□ -2.17
CBX4O00257 SNORD12-201ENST00000391002 90 ntBASIC1.51□□□□□ -2.17
CBX4O00257 RNA5SP95-201ENST00000410319 137 ntBASIC1.51□□□□□ -2.17
CBX4O00257 RNU6-735P-201ENST00000410612 107 ntBASIC1.51□□□□□ -2.17
CBX4O00257 RNU7-90P-201ENST00000459216 62 ntBASIC1.51□□□□□ -2.17
CBX4O00257 RNU7-21P-201ENST00000459430 62 ntBASIC1.51□□□□□ -2.17
CBX4O00257 SNORD79.1-201ENST00000516069 84 ntBASIC1.51□□□□□ -2.17
CBX4O00257 AL157834.3-201ENST00000615543 103 ntBASIC1.51□□□□□ -2.17
CBX4O00257 SNORD113.3-201ENST00000364630 78 ntBASIC1.5□□□□□ -2.17
CBX4O00257 RNU6-392P-201ENST00000364926 101 ntBASIC1.5□□□□□ -2.17
CBX4O00257 SNORD116-21-201ENST00000384507 92 ntBASIC1.5□□□□□ -2.17
CBX4O00257 RNU6-880P-201ENST00000384526 107 ntBASIC1.5□□□□□ -2.17
CBX4O00257 MIR548D2-201ENST00000384955 97 ntBASIC1.5□□□□□ -2.17
CBX4O00257 MIR548A1-201ENST00000385041 97 ntBASIC1.5□□□□□ -2.17
CBX4O00257 MT-TI-201ENST00000387365 69 ntBASIC1.5□□□□□ -2.17
CBX4O00257 RNU6ATAC8P-201ENST00000408460 126 ntBASIC1.5□□□□□ -2.17
CBX4O00257 RNU6-1086P-201ENST00000410930 100 ntBASIC1.5□□□□□ -2.17
CBX4O00257 RNU7-35P-201ENST00000517174 62 ntBASIC1.5□□□□□ -2.17
CBX4O00257 AC007012.1-201ENST00000567192 175 ntBASIC1.5□□□□□ -2.17
CBX4O00257 MIR4421-201ENST00000578133 69 ntBASIC1.5□□□□□ -2.17
CBX4O00257 AL662814.1-201ENST00000617364 121 ntBASIC1.5□□□□□ -2.17
CBX4O00257 MIR6740-201ENST00000618268 113 ntBASIC1.5□□□□□ -2.17
CBX4O00257 RNU6-1165P-201ENST00000410119 107 ntBASIC1.49□□□□□ -2.17
CBX4O00257 RPL39P25-201ENST00000449384 154 ntBASIC1.49□□□□□ -2.17
CBX4O00257 ZNF209P-201ENST00000593450 2304 ntBASIC1.48□□□□□ -2.17
CBX4O00257 RNA5SP327-201ENST00000362494 101 ntBASIC1.48□□□□□ -2.17
CBX4O00257 RNU6-580P-201ENST00000365159 107 ntBASIC1.48□□□□□ -2.17
CBX4O00257 SNORA25-201ENST00000384384 134 ntBASIC1.48□□□□□ -2.17
CBX4O00257 AC079760.1-201ENST00000456952 202 ntTSL 3 BASIC1.48□□□□□ -2.17
CBX4O00257 RNU7-79P-201ENST00000516082 62 ntBASIC1.48□□□□□ -2.17
CBX4O00257 AC141846.1-201ENST00000568348 142 ntBASIC1.48□□□□□ -2.17
CBX4O00257 AC008163.1-202ENST00000636004 2889 ntBASIC1.47□□□□□ -2.17
CBX4O00257 JMJD1C-212ENST00000639129 7901 ntAPPRIS ALT2 TSL 5 BASIC1.47□□□□□ -2.17
CBX4O00257 MIR563-201ENST00000385080 79 ntBASIC1.47□□□□□ -2.17
CBX4O00257 SNORD111-201ENST00000408139 94 ntBASIC1.47□□□□□ -2.17
CBX4O00257 AC036111.3-201ENST00000526389 112 ntBASIC1.47□□□□□ -2.17
CBX4O00257 AC023827.1-201ENST00000569247 97 ntBASIC1.47□□□□□ -2.17
CBX4O00257 SNORA4-201ENST00000584302 138 ntBASIC1.47□□□□□ -2.17
CBX4O00257 FAM71BP1-201ENST00000604431 523 ntBASIC1.47□□□□□ -2.17
CBX4O00257 AC012676.2-201ENST00000619258 186 ntBASIC1.47□□□□□ -2.17
CBX4O00257 RNU6-53P-201ENST00000365367 106 ntBASIC1.46□□□□□ -2.18
CBX4O00257 SNORD26-201ENST00000384147 75 ntBASIC1.46□□□□□ -2.18
CBX4O00257 RNU6-42P-201ENST00000384165 107 ntBASIC1.46□□□□□ -2.18
CBX4O00257 MIR320A-201ENST00000385302 82 ntBASIC1.46□□□□□ -2.18
CBX4O00257 MT-TF-201ENST00000387314 71 ntBASIC1.46□□□□□ -2.18
CBX4O00257 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC1.46□□□□□ -2.18
CBX4O00257 RPS29P23-201ENST00000458635 123 ntBASIC1.46□□□□□ -2.18
CBX4O00257 RNU1-98P-201ENST00000458992 160 ntBASIC1.46□□□□□ -2.18
CBX4O00257 RNU6-412P-201ENST00000516434 106 ntBASIC1.46□□□□□ -2.18
CBX4O00257 MIR4679-2-201ENST00000578358 77 ntBASIC1.46□□□□□ -2.18
CBX4O00257 MIR6504-201ENST00000613520 61 ntBASIC1.46□□□□□ -2.18
CBX4O00257 AC106800.4-201ENST00000614905 153 ntBASIC1.46□□□□□ -2.18
CBX4O00257 AC087741.2-201ENST00000619415 172 ntBASIC1.46□□□□□ -2.18
CBX4O00257 AL589743.1-201ENST00000551932 2712 ntBASIC1.46□□□□□ -2.18
CBX4O00257 Y_RNA.362-201ENST00000365518 110 ntBASIC1.45□□□□□ -2.18
CBX4O00257 AC063976.4-201ENST00000421971 163 ntBASIC1.45□□□□□ -2.18
CBX4O00257 MIR18B-201ENST00000454574 71 ntBASIC1.45□□□□□ -2.18
CBX4O00257 RNA5SP102-201ENST00000516865 106 ntBASIC1.45□□□□□ -2.18
CBX4O00257 MIR6129-201ENST00000616087 109 ntBASIC1.45□□□□□ -2.18
CBX4O00257 ZGRF1-202ENST00000309071 3347 ntTSL 1 (best) BASIC1.44□□□□□ -2.18
CBX4O00257 SKIL-204ENST00000458537 7182 ntAPPRIS P1 TSL 1 (best) BASIC1.44□□□□□ -2.18
CBX4O00257 SNORD115-19-201ENST00000363098 82 ntBASIC1.44□□□□□ -2.18
CBX4O00257 SNORD115-18-201ENST00000363293 82 ntBASIC1.44□□□□□ -2.18
CBX4O00257 SNORD115-17-201ENST00000364612 82 ntBASIC1.44□□□□□ -2.18
CBX4O00257 RNU6ATAC42P-201ENST00000408637 95 ntBASIC1.44□□□□□ -2.18
CBX4O00257 RNU6-994P-201ENST00000410507 111 ntBASIC1.44□□□□□ -2.18
CBX4O00257 AL078603.1-201ENST00000603824 313 ntBASIC1.44□□□□□ -2.18
CBX4O00257 MIR30D-201ENST00000362283 70 ntBASIC1.43□□□□□ -2.18
CBX4O00257 Y_RNA.35-201ENST00000362601 101 ntBASIC1.43□□□□□ -2.18
CBX4O00257 RNY1P13-201ENST00000365030 105 ntBASIC1.43□□□□□ -2.18
CBX4O00257 RNU6-949P-201ENST00000384040 107 ntBASIC1.43□□□□□ -2.18
CBX4O00257 RNU6-616P-201ENST00000384353 107 ntBASIC1.43□□□□□ -2.18
CBX4O00257 RNU1-123P-201ENST00000458950 160 ntBASIC1.43□□□□□ -2.18
CBX4O00257 AC019288.1-201ENST00000557918 224 ntBASIC1.43□□□□□ -2.18
CBX4O00257 AL353770.2-201ENST00000620024 78 ntBASIC1.43□□□□□ -2.18
CBX4O00257 C9orf84-205ENST00000394779 5060 ntAPPRIS ALT2 TSL 2 BASIC1.43□□□□□ -2.18
CBX4O00257 LINC00643-201ENST00000334389 3247 ntTSL 2 BASIC1.42□□□□□ -2.18
CBX4O00257 Y_RNA.191-201ENST00000363972 113 ntBASIC1.42□□□□□ -2.18
CBX4O00257 SNORA25.8-201ENST00000364831 128 ntBASIC1.42□□□□□ -2.18
Retrieved 100 of 98,524 protein–RNA pairs in 322 ms