Protein–RNA interactions for Protein: P70390

Shox2, Short stature homeobox protein 2, mousemouse

Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shox2P70390 Gm11249-201ENSMUST00000117071 859 ntBASIC15.89■□□□□ 0.13
Shox2P70390 Gm12473-201ENSMUST00000137535 579 ntTSL 5 BASIC15.89■□□□□ 0.13
Shox2P70390 AC120002.2-201ENSMUST00000220205 773 ntBASIC15.89■□□□□ 0.13
Shox2P70390 B4galt3-202ENSMUST00000111313 2098 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Shox2P70390 Sf1-204ENSMUST00000113489 2863 ntTSL 5 BASIC15.89■□□□□ 0.13
Shox2P70390 Gm44291-201ENSMUST00000203102 2865 ntBASIC15.89■□□□□ 0.13
Shox2P70390 Cbfa2t3-202ENSMUST00000064674 2867 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
Shox2P70390 Atp2c1-205ENSMUST00000163879 2408 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
Shox2P70390 Map6d1-201ENSMUST00000040880 3273 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Shox2P70390 Zkscan3-208ENSMUST00000224820 5398 ntBASIC15.89■□□□□ 0.13
Shox2P70390 Stxbp1-201ENSMUST00000050000 3892 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Shox2P70390 Lrrc14-202ENSMUST00000127208 4849 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Shox2P70390 Cep19-202ENSMUST00000115168 1718 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Shox2P70390 Scyl1-201ENSMUST00000025890 2637 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Shox2P70390 Miga1-205ENSMUST00000199397 2842 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
Shox2P70390 Dok7-201ENSMUST00000050709 2498 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
Shox2P70390 Fscn1-201ENSMUST00000031565 2675 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Shox2P70390 Wipi2-201ENSMUST00000036872 5171 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
Shox2P70390 Cdk12-203ENSMUST00000107539 5912 ntAPPRIS ALT2 TSL 5 BASIC15.88■□□□□ 0.13
Shox2P70390 Tmem56-203ENSMUST00000128909 6696 ntAPPRIS P2 TSL 1 (best) BASIC15.88■□□□□ 0.13
Shox2P70390 Ubp1-206ENSMUST00000216558 1623 ntAPPRIS P4 TSL 1 (best) BASIC15.88■□□□□ 0.13
Shox2P70390 Htr7-201ENSMUST00000099505 1606 ntTSL 5 BASIC15.88■□□□□ 0.13
Shox2P70390 Gm12134-201ENSMUST00000122109 520 ntBASIC15.88■□□□□ 0.13
Shox2P70390 1110065P20Rik-203ENSMUST00000137769 659 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
Shox2P70390 2310001K24Rik-202ENSMUST00000186760 740 ntTSL 2 BASIC15.88■□□□□ 0.13
Shox2P70390 Lmo1-202ENSMUST00000207178 912 ntAPPRIS ALT1 TSL 2 BASIC15.88■□□□□ 0.13
Shox2P70390 Cox6a1-201ENSMUST00000040154 571 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Shox2P70390 Scamp4-201ENSMUST00000079883 1804 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Shox2P70390 Csgalnact2-201ENSMUST00000049344 3661 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Shox2P70390 Slc35c2-204ENSMUST00000109300 2008 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Shox2P70390 Cflar-204ENSMUST00000114309 2010 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
Shox2P70390 Slc29a1-222ENSMUST00000171847 2033 ntAPPRIS P3 TSL 1 (best) BASIC15.88■□□□□ 0.13
Shox2P70390 Pcbp4-201ENSMUST00000024260 2035 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Shox2P70390 Dnaja3-201ENSMUST00000060067 2648 ntAPPRIS P3 TSL 1 (best) BASIC15.88■□□□□ 0.13
Shox2P70390 Thnsl2-202ENSMUST00000160918 2077 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Shox2P70390 Gm21596-201ENSMUST00000178049 1316 ntBASIC15.88■□□□□ 0.13
Shox2P70390 C1qtnf12-201ENSMUST00000024338 1315 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Shox2P70390 Scrn2-201ENSMUST00000021249 1530 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Shox2P70390 Fbxo5-201ENSMUST00000019907 1940 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Shox2P70390 Nrxn1-206ENSMUST00000160800 5683 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
Shox2P70390 Tmem9b-202ENSMUST00000118571 1771 ntAPPRIS ALT2 TSL 1 (best) BASIC15.87■□□□□ 0.13
Shox2P70390 Prnp-201ENSMUST00000091288 2184 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Shox2P70390 Tap1-206ENSMUST00000170086 2953 ntAPPRIS P3 TSL 1 (best) BASIC15.87■□□□□ 0.13
Shox2P70390 Kcnma1-228ENSMUST00000224468 3753 ntAPPRIS ALT2 BASIC15.87■□□□□ 0.13
Shox2P70390 Cyp2a5-201ENSMUST00000005685 2013 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Shox2P70390 Il11ra1-201ENSMUST00000098132 2009 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Shox2P70390 Kdelr2-201ENSMUST00000110731 1829 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Shox2P70390 Mettl7a1-201ENSMUST00000067752 1883 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Shox2P70390 Tomm6os-201ENSMUST00000155812 2944 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
Shox2P70390 Sox21-201ENSMUST00000170662 3799 ntAPPRIS P1 BASIC15.87■□□□□ 0.13
Shox2P70390 Ppp3cb-206ENSMUST00000161989 2322 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
Shox2P70390 Taz-208ENSMUST00000132437 768 ntTSL 3 BASIC15.87■□□□□ 0.13
Shox2P70390 Gm20544-201ENSMUST00000174338 690 ntTSL 3 BASIC15.87■□□□□ 0.13
Shox2P70390 AC122769.4-201ENSMUST00000228166 901 ntBASIC15.87■□□□□ 0.13
Shox2P70390 Med29-201ENSMUST00000003536 1281 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Shox2P70390 Olfr322-201ENSMUST00000072030 984 ntAPPRIS P1 BASIC15.87■□□□□ 0.13
Shox2P70390 Hist1h3g-201ENSMUST00000080859 530 ntAPPRIS P1 BASIC15.87■□□□□ 0.13
Shox2P70390 Gm2061-201ENSMUST00000180623 2761 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
Shox2P70390 Cacna1a-201ENSMUST00000121390 7926 ntAPPRIS P3 TSL 1 (best) BASIC15.87■□□□□ 0.13
Shox2P70390 Neto1-201ENSMUST00000058829 3531 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Shox2P70390 Asb2-201ENSMUST00000021617 2690 ntAPPRIS P2 TSL 1 (best) BASIC15.87■□□□□ 0.13
Shox2P70390 Fbxo46-202ENSMUST00000165913 2498 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Shox2P70390 Ccdc117-201ENSMUST00000020776 3372 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Shox2P70390 Chtf18-201ENSMUST00000048054 3214 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Shox2P70390 Ntng1-204ENSMUST00000106571 1446 ntTSL 5 BASIC15.86■□□□□ 0.13
Shox2P70390 Ntng1-210ENSMUST00000138953 1443 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
Shox2P70390 Mrm2-201ENSMUST00000031536 1443 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Shox2P70390 Fhl3-201ENSMUST00000038684 1664 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
Shox2P70390 Srrm1-208ENSMUST00000136342 3152 ntAPPRIS P3 TSL 5 BASIC15.86■□□□□ 0.13
Shox2P70390 Sigirr-201ENSMUST00000097958 1990 ntAPPRIS P2 TSL 1 (best) BASIC15.86■□□□□ 0.13
Shox2P70390 Slk-202ENSMUST00000051691 4239 ntAPPRIS P3 TSL 1 (best) BASIC15.86■□□□□ 0.13
Shox2P70390 Man2a1-201ENSMUST00000086723 6991 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Shox2P70390 Syn1-202ENSMUST00000115345 3261 ntAPPRIS ALT2 TSL 1 (best) BASIC15.86■□□□□ 0.13
Shox2P70390 Ablim2-202ENSMUST00000101280 3042 ntTSL 5 BASIC15.86■□□□□ 0.13
Shox2P70390 Hoxd12-201ENSMUST00000001878 2534 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Shox2P70390 Pnpla2-202ENSMUST00000064151 1799 ntAPPRIS P3 TSL 1 (best) BASIC15.86■□□□□ 0.13
Shox2P70390 Ppp2r5e-201ENSMUST00000021447 4810 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Shox2P70390 Tpm1-204ENSMUST00000113684 887 ntTSL 5 BASIC15.86■□□□□ 0.13
Shox2P70390 Hmga1-206ENSMUST00000119486 1003 ntAPPRIS P3 TSL 2 BASIC15.86■□□□□ 0.13
Shox2P70390 Fev-202ENSMUST00000159232 928 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
Shox2P70390 Gm38165-201ENSMUST00000191654 486 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
Shox2P70390 Cldn22-201ENSMUST00000038693 995 ntAPPRIS P1 BASIC15.86■□□□□ 0.13
Shox2P70390 Gbp5-201ENSMUST00000090127 3055 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Shox2P70390 4930513N10Rik-203ENSMUST00000145562 2803 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
Shox2P70390 Ubr3-202ENSMUST00000112251 8081 ntAPPRIS ALT2 TSL 5 BASIC15.86■□□□□ 0.13
Shox2P70390 Zfp318-201ENSMUST00000113481 7850 ntAPPRIS P4 TSL 5 BASIC15.86■□□□□ 0.13
Shox2P70390 A330009N23Rik-201ENSMUST00000180639 1392 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
Shox2P70390 Mmp17-201ENSMUST00000031390 6422 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Shox2P70390 Gm16759-204ENSMUST00000191455 4272 ntTSL 5 BASIC15.85■□□□□ 0.13
Shox2P70390 Aig1-201ENSMUST00000019942 1439 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
Shox2P70390 Zdhhc18-201ENSMUST00000084238 4580 ntAPPRIS P1 TSL 2 BASIC15.85■□□□□ 0.13
Shox2P70390 Pprc1-203ENSMUST00000111899 5246 ntAPPRIS P2 TSL 1 (best) BASIC15.85■□□□□ 0.13
Shox2P70390 AC154855.1-201ENSMUST00000227353 1458 ntBASIC15.85■□□□□ 0.13
Shox2P70390 Arhgef10l-206ENSMUST00000105799 4508 ntAPPRIS ALT2 TSL 5 BASIC15.85■□□□□ 0.13
Shox2P70390 Chtop-205ENSMUST00000107343 3118 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
Shox2P70390 Fbxo31-201ENSMUST00000059018 4358 ntAPPRIS P2 TSL 1 (best) BASIC15.85■□□□□ 0.13
Shox2P70390 Sox5-202ENSMUST00000077160 2526 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
Shox2P70390 Knstrn-202ENSMUST00000110842 925 ntAPPRIS ALT2 TSL 3 BASIC15.85■□□□□ 0.13
Shox2P70390 Mrps10-201ENSMUST00000060752 1109 ntTSL 5 BASIC15.85■□□□□ 0.13
Shox2P70390 Syngr1-202ENSMUST00000009728 819 ntAPPRIS ALT2 TSL 1 (best) BASIC15.85■□□□□ 0.13
Retrieved 100 of 76,532 protein–RNA pairs in 33.9 ms