Protein–RNA interactions for Protein: P02708

CHRNA1, Acetylcholine receptor subunit alpha, humanhuman

Predictions only

Length 482 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHRNA1P02708 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC20.52■□□□□ 0.88
CHRNA1P02708 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC20.52■□□□□ 0.88
CHRNA1P02708 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
CHRNA1P02708 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC20.52■□□□□ 0.88
CHRNA1P02708 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
CHRNA1P02708 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
CHRNA1P02708 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
CHRNA1P02708 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC20.52■□□□□ 0.87
CHRNA1P02708 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
CHRNA1P02708 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC20.51■□□□□ 0.87
CHRNA1P02708 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC20.51■□□□□ 0.87
CHRNA1P02708 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC20.51■□□□□ 0.87
CHRNA1P02708 KRT8P32-201ENST00000512863 1461 ntBASIC20.51■□□□□ 0.87
CHRNA1P02708 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
CHRNA1P02708 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
CHRNA1P02708 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
CHRNA1P02708 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CHRNA1P02708 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
CHRNA1P02708 PGLS-201ENST00000252603 1028 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CHRNA1P02708 ENSA-205ENST00000361532 792 ntTSL 2 BASIC20.51■□□□□ 0.87
CHRNA1P02708 MIR564-202ENST00000385049 94 ntBASIC20.51■□□□□ 0.87
CHRNA1P02708 UFSP1-201ENST00000388761 996 ntAPPRIS P1 BASIC20.51■□□□□ 0.87
CHRNA1P02708 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC20.51■□□□□ 0.87
CHRNA1P02708 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC20.51■□□□□ 0.87
CHRNA1P02708 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CHRNA1P02708 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CHRNA1P02708 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC20.51■□□□□ 0.87
CHRNA1P02708 KRT8P7-201ENST00000533003 1432 ntBASIC20.51■□□□□ 0.87
CHRNA1P02708 HOXB1-202ENST00000577092 1414 ntBASIC20.51■□□□□ 0.87
CHRNA1P02708 IRX1P1-201ENST00000438849 1838 ntBASIC20.5■□□□□ 0.87
CHRNA1P02708 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CHRNA1P02708 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
CHRNA1P02708 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CHRNA1P02708 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC20.5■□□□□ 0.87
CHRNA1P02708 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC20.5■□□□□ 0.87
CHRNA1P02708 PPIH-202ENST00000372549 327 ntTSL 3 BASIC20.5■□□□□ 0.87
CHRNA1P02708 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC20.5■□□□□ 0.87
CHRNA1P02708 LENG8-AS1-201ENST00000416022 582 ntTSL 3 BASIC20.5■□□□□ 0.87
CHRNA1P02708 TSPY22P-201ENST00000427496 604 ntBASIC20.5■□□□□ 0.87
CHRNA1P02708 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC20.5■□□□□ 0.87
CHRNA1P02708 PRELID1P1-202ENST00000567272 903 ntBASIC20.5■□□□□ 0.87
CHRNA1P02708 AC010240.3-201ENST00000607688 395 ntBASIC20.5■□□□□ 0.87
CHRNA1P02708 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CHRNA1P02708 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC20.5■□□□□ 0.87
CHRNA1P02708 SPSB3-201ENST00000301717 1449 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CHRNA1P02708 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CHRNA1P02708 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC20.5■□□□□ 0.87
CHRNA1P02708 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CHRNA1P02708 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC20.5■□□□□ 0.87
CHRNA1P02708 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC20.5■□□□□ 0.87
CHRNA1P02708 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC20.5■□□□□ 0.87
CHRNA1P02708 SHBG-201ENST00000340624 1311 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
CHRNA1P02708 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC20.5■□□□□ 0.87
CHRNA1P02708 SRSF1-208ENST00000584773 1317 ntTSL 5 BASIC20.5■□□□□ 0.87
CHRNA1P02708 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CHRNA1P02708 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC20.49■□□□□ 0.87
CHRNA1P02708 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CHRNA1P02708 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC20.49■□□□□ 0.87
CHRNA1P02708 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC20.49■□□□□ 0.87
CHRNA1P02708 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC20.49■□□□□ 0.87
CHRNA1P02708 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC20.49■□□□□ 0.87
CHRNA1P02708 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC20.49■□□□□ 0.87
CHRNA1P02708 UBQLN4P1-201ENST00000461599 1801 ntBASIC20.49■□□□□ 0.87
CHRNA1P02708 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC20.49■□□□□ 0.87
CHRNA1P02708 PKD1P6-201ENST00000343738 4769 ntBASIC20.49■□□□□ 0.87
CHRNA1P02708 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC20.49■□□□□ 0.87
CHRNA1P02708 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CHRNA1P02708 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
CHRNA1P02708 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC20.49■□□□□ 0.87
CHRNA1P02708 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC20.49■□□□□ 0.87
CHRNA1P02708 CHCHD2P8-201ENST00000429873 447 ntBASIC20.49■□□□□ 0.87
CHRNA1P02708 ELP6-205ENST00000439305 880 ntTSL 2 BASIC20.49■□□□□ 0.87
CHRNA1P02708 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
CHRNA1P02708 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC20.49■□□□□ 0.87
CHRNA1P02708 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC20.49■□□□□ 0.87
CHRNA1P02708 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC20.49■□□□□ 0.87
CHRNA1P02708 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC20.49■□□□□ 0.87
CHRNA1P02708 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
CHRNA1P02708 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC20.49■□□□□ 0.87
CHRNA1P02708 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC20.49■□□□□ 0.87
CHRNA1P02708 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC20.49■□□□□ 0.87
CHRNA1P02708 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC20.49■□□□□ 0.87
CHRNA1P02708 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CHRNA1P02708 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC20.49■□□□□ 0.87
CHRNA1P02708 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC20.49■□□□□ 0.87
CHRNA1P02708 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC20.48■□□□□ 0.87
CHRNA1P02708 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CHRNA1P02708 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC20.48■□□□□ 0.87
CHRNA1P02708 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC20.48■□□□□ 0.87
CHRNA1P02708 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CHRNA1P02708 GLYCTK-201ENST00000305690 1371 ntTSL 5 BASIC20.48■□□□□ 0.87
CHRNA1P02708 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC20.48■□□□□ 0.87
CHRNA1P02708 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC20.48■□□□□ 0.87
CHRNA1P02708 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC20.48■□□□□ 0.87
CHRNA1P02708 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CHRNA1P02708 DBNDD2-202ENST00000360981 1078 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CHRNA1P02708 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC20.48■□□□□ 0.87
CHRNA1P02708 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC20.48■□□□□ 0.87
CHRNA1P02708 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CHRNA1P02708 AC069368.1-202ENST00000437723 750 ntAPPRIS P1 TSL 5 BASIC20.48■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 25.7 ms