Protein–RNA interactions for Protein: Q9Y6I4

USP3, Ubiquitin carboxyl-terminal hydrolase 3, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP3Q9Y6I4 RNU6-24P-201ENST00000384440 107 ntBASIC2.51□□□□□ -2.01
USP3Q9Y6I4 Y_RNA.609-201ENST00000410669 89 ntBASIC2.51□□□□□ -2.01
USP3Q9Y6I4 SNORD111.1-201ENST00000516421 86 ntBASIC2.51□□□□□ -2.01
USP3Q9Y6I4 AC046143.2-201ENST00000609789 160 ntBASIC2.51□□□□□ -2.01
USP3Q9Y6I4 FAM13A-AS1_1.1-201ENST00000612555 119 ntBASIC2.51□□□□□ -2.01
USP3Q9Y6I4 AC010297.1-201ENST00000623948 149 ntBASIC2.51□□□□□ -2.01
USP3Q9Y6I4 MIR548BB-201ENST00000626714 66 ntBASIC2.51□□□□□ -2.01
USP3Q9Y6I4 TXLNGY-201ENST00000253320 7299 ntTSL 2 BASIC2.51□□□□□ -2.01
USP3Q9Y6I4 MIR21-201ENST00000362134 72 ntBASIC2.5□□□□□ -2.01
USP3Q9Y6I4 SNORA3A-201ENST00000364113 130 ntBASIC2.5□□□□□ -2.01
USP3Q9Y6I4 Y_RNA.244-201ENST00000364484 109 ntBASIC2.5□□□□□ -2.01
USP3Q9Y6I4 RNU6-1296P-201ENST00000383879 107 ntBASIC2.5□□□□□ -2.01
USP3Q9Y6I4 AL161935.2-201ENST00000414627 60 ntBASIC2.5□□□□□ -2.01
USP3Q9Y6I4 RPS29P11-201ENST00000496507 171 ntBASIC2.5□□□□□ -2.01
USP3Q9Y6I4 RNU2-19P-201ENST00000517288 84 ntBASIC2.5□□□□□ -2.01
USP3Q9Y6I4 AL662814.1-201ENST00000617364 121 ntBASIC2.5□□□□□ -2.01
USP3Q9Y6I4 AC105081.1-201ENST00000617727 106 ntBASIC2.5□□□□□ -2.01
USP3Q9Y6I4 CHD9-202ENST00000398510 11337 ntTSL 1 (best) BASIC2.5□□□□□ -2.01
USP3Q9Y6I4 MAP3K2-203ENST00000409947 10992 ntAPPRIS P1 TSL 1 (best) BASIC2.5□□□□□ -2.01
USP3Q9Y6I4 RNY1P2-201ENST00000364820 117 ntBASIC2.49□□□□□ -2.01
USP3Q9Y6I4 RNA5SP212-201ENST00000391223 107 ntBASIC2.49□□□□□ -2.01
USP3Q9Y6I4 JTBP1-201ENST00000441314 247 ntBASIC2.49□□□□□ -2.01
USP3Q9Y6I4 RNU6-857P-201ENST00000515893 110 ntBASIC2.49□□□□□ -2.01
USP3Q9Y6I4 RNU7-41P-201ENST00000515917 61 ntBASIC2.49□□□□□ -2.01
USP3Q9Y6I4 RNU7-193P-201ENST00000516723 65 ntBASIC2.49□□□□□ -2.01
USP3Q9Y6I4 AP000753.3-201ENST00000604083 169 ntBASIC2.49□□□□□ -2.01
USP3Q9Y6I4 SACS-201ENST00000382292 15324 ntAPPRIS P1 TSL 5 BASIC2.49□□□□□ -2.01
USP3Q9Y6I4 Z82195.2-201ENST00000612348 18351 ntBASIC2.48□□□□□ -2.01
USP3Q9Y6I4 RNA5SP126-201ENST00000365092 109 ntBASIC2.48□□□□□ -2.01
USP3Q9Y6I4 RNU6-949P-201ENST00000384040 107 ntBASIC2.48□□□□□ -2.01
USP3Q9Y6I4 MIR513A1-201ENST00000385138 129 ntBASIC2.48□□□□□ -2.01
USP3Q9Y6I4 AL365434.1-201ENST00000412362 380 ntTSL 3 BASIC2.48□□□□□ -2.01
USP3Q9Y6I4 AC009474.2-201ENST00000451383 136 ntBASIC2.48□□□□□ -2.01
USP3Q9Y6I4 RNA5SP24-201ENST00000516478 95 ntBASIC2.48□□□□□ -2.01
USP3Q9Y6I4 AC025887.1-201ENST00000578349 264 ntTSL 3 BASIC2.48□□□□□ -2.01
USP3Q9Y6I4 MIR5007-201ENST00000583098 95 ntBASIC2.48□□□□□ -2.01
USP3Q9Y6I4 CERS6-AS1-202ENST00000594898 499 ntTSL 5 BASIC2.48□□□□□ -2.01
USP3Q9Y6I4 Metazoa_SRP.32-201ENST00000622685 286 ntBASIC2.48□□□□□ -2.01
USP3Q9Y6I4 RNU1-98P-201ENST00000458992 160 ntBASIC2.47□□□□□ -2.01
USP3Q9Y6I4 DENND4A-202ENST00000443035 8665 ntTSL 1 (best) BASIC2.47□□□□□ -2.01
USP3Q9Y6I4 WWP1P1-201ENST00000466609 2769 ntBASIC2.46□□□□□ -2.02
USP3Q9Y6I4 TTK-202ENST00000369798 3010 ntAPPRIS P3 TSL 1 (best) BASIC2.46□□□□□ -2.02
USP3Q9Y6I4 RNA5SP393-201ENST00000363423 117 ntBASIC2.46□□□□□ -2.02
USP3Q9Y6I4 Y_RNA.313-201ENST00000365095 103 ntBASIC2.46□□□□□ -2.02
USP3Q9Y6I4 RNU6-1237P-201ENST00000384777 107 ntBASIC2.46□□□□□ -2.02
USP3Q9Y6I4 RNU4-53P-201ENST00000410828 140 ntBASIC2.46□□□□□ -2.02
USP3Q9Y6I4 SUMO1P4-201ENST00000429430 302 ntBASIC2.46□□□□□ -2.02
USP3Q9Y6I4 snoU13.2-201ENST00000459201 104 ntBASIC2.46□□□□□ -2.02
USP3Q9Y6I4 AL513043.2-201ENST00000573941 143 ntBASIC2.46□□□□□ -2.02
USP3Q9Y6I4 SNORD53-201ENST00000579969 78 ntBASIC2.46□□□□□ -2.02
USP3Q9Y6I4 FO624990.1-201ENST00000636373 85 ntBASIC2.46□□□□□ -2.02
USP3Q9Y6I4 RICTOR-202ENST00000357387 9543 ntAPPRIS P1 TSL 1 (best) BASIC2.46□□□□□ -2.02
USP3Q9Y6I4 Y_RNA.168-201ENST00000363740 102 ntBASIC2.45□□□□□ -2.02
USP3Q9Y6I4 RNA5SP259-201ENST00000365541 109 ntBASIC2.45□□□□□ -2.02
USP3Q9Y6I4 MIR519C-201ENST00000385053 87 ntBASIC2.45□□□□□ -2.02
USP3Q9Y6I4 MIR524-201ENST00000385242 87 ntBASIC2.45□□□□□ -2.02
USP3Q9Y6I4 AC019129.1-201ENST00000403786 261 ntBASIC2.45□□□□□ -2.02
USP3Q9Y6I4 MIR4435-1-201ENST00000582552 80 ntBASIC2.45□□□□□ -2.02
USP3Q9Y6I4 AC245884.12-201ENST00000615364 59 ntBASIC2.45□□□□□ -2.02
USP3Q9Y6I4 PCDH11Y-203ENST00000362095 4220 ntAPPRIS ALT2 TSL 1 (best) BASIC2.44□□□□□ -2.02
USP3Q9Y6I4 SNORD115-37-201ENST00000363768 82 ntBASIC2.44□□□□□ -2.02
USP3Q9Y6I4 SNORA2B-201ENST00000384583 137 ntBASIC2.44□□□□□ -2.02
USP3Q9Y6I4 AC027119.1-201ENST00000440877 241 ntBASIC2.44□□□□□ -2.02
USP3Q9Y6I4 AL078612.1-201ENST00000533009 150 ntTSL 5 BASIC2.44□□□□□ -2.02
USP3Q9Y6I4 MIR5194-201ENST00000582634 120 ntBASIC2.44□□□□□ -2.02
USP3Q9Y6I4 MIR4662A-201ENST00000637499 67 ntBASIC2.44□□□□□ -2.02
USP3Q9Y6I4 AC008163.1-205ENST00000413944 4649 ntTSL 1 (best) BASIC2.43□□□□□ -2.02
USP3Q9Y6I4 Y_RNA.191-201ENST00000363972 113 ntBASIC2.43□□□□□ -2.02
USP3Q9Y6I4 RNU6-396P-201ENST00000365369 105 ntBASIC2.43□□□□□ -2.02
USP3Q9Y6I4 MIR181B2-201ENST00000385004 89 ntBASIC2.43□□□□□ -2.02
USP3Q9Y6I4 RNA5SP181-201ENST00000410246 98 ntBASIC2.43□□□□□ -2.02
USP3Q9Y6I4 MIR4264-201ENST00000583520 66 ntBASIC2.43□□□□□ -2.02
USP3Q9Y6I4 AL137847.3-201ENST00000611521 109 ntBASIC2.43□□□□□ -2.02
USP3Q9Y6I4 CYP19A1-220ENST00000613097 123 ntTSL 5 BASIC2.43□□□□□ -2.02
USP3Q9Y6I4 AKAP9-203ENST00000359028 12247 ntAPPRIS ALT2 TSL 5 BASIC2.43□□□□□ -2.02
USP3Q9Y6I4 SNORD114-30-201ENST00000364448 72 ntBASIC2.42□□□□□ -2.02
USP3Q9Y6I4 MIR563-201ENST00000385080 79 ntBASIC2.42□□□□□ -2.02
USP3Q9Y6I4 SNORD41-201ENST00000386967 70 ntBASIC2.42□□□□□ -2.02
USP3Q9Y6I4 MT-TN-201ENST00000387400 73 ntBASIC2.42□□□□□ -2.02
USP3Q9Y6I4 SNORA3.2-201ENST00000408221 125 ntBASIC2.42□□□□□ -2.02
USP3Q9Y6I4 RNA5SP508-201ENST00000411327 119 ntBASIC2.42□□□□□ -2.02
USP3Q9Y6I4 AC055731.1-201ENST00000474387 401 ntBASIC2.42□□□□□ -2.02
USP3Q9Y6I4 AC008413.1-201ENST00000511864 177 ntBASIC2.42□□□□□ -2.02
USP3Q9Y6I4 RNU6ATAC9P-201ENST00000516210 116 ntBASIC2.42□□□□□ -2.02
USP3Q9Y6I4 RNU6-250P-201ENST00000516958 103 ntBASIC2.42□□□□□ -2.02
USP3Q9Y6I4 MIR4446-201ENST00000578505 67 ntBASIC2.42□□□□□ -2.02
USP3Q9Y6I4 AL049779.4-201ENST00000604500 156 ntBASIC2.42□□□□□ -2.02
USP3Q9Y6I4 MIR8066-201ENST00000617280 78 ntBASIC2.42□□□□□ -2.02
USP3Q9Y6I4 NEB-203ENST00000397345 26202 ntAPPRIS ALT2 TSL 5 BASIC2.42□□□□□ -2.02
USP3Q9Y6I4 NEB-209ENST00000427231 26202 ntAPPRIS ALT2 TSL 5 BASIC2.42□□□□□ -2.02
USP3Q9Y6I4 RNU6-301P-201ENST00000384277 107 ntBASIC2.41□□□□□ -2.02
USP3Q9Y6I4 RNU6-613P-201ENST00000410412 108 ntBASIC2.41□□□□□ -2.02
USP3Q9Y6I4 HSPE1P24-201ENST00000450782 238 ntBASIC2.41□□□□□ -2.02
USP3Q9Y6I4 AC093729.1-201ENST00000513074 128 ntBASIC2.41□□□□□ -2.02
USP3Q9Y6I4 GHRLOS.1-201ENST00000610995 70 ntBASIC2.41□□□□□ -2.02
USP3Q9Y6I4 HAS2-201ENST00000303924 4190 ntAPPRIS P1 TSL 1 (best) BASIC2.4□□□□□ -2.02
USP3Q9Y6I4 RNA5SP133-201ENST00000363368 119 ntBASIC2.4□□□□□ -2.03
USP3Q9Y6I4 Y_RNA.221-201ENST00000364248 96 ntBASIC2.4□□□□□ -2.03
USP3Q9Y6I4 Y_RNA.316-201ENST00000365118 111 ntBASIC2.4□□□□□ -2.03
USP3Q9Y6I4 RNU6-652P-201ENST00000365488 107 ntBASIC2.4□□□□□ -2.03
Retrieved 100 of 98,524 protein–RNA pairs in 121.1 ms