Protein–RNA interactions for Protein: Q9Y566

SHANK1, SH3 and multiple ankyrin repeat domains protein 1, humanhuman

Predictions only

Length 2,161 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1Q9Y566 AC062037.2-201ENST00000610137 73 ntBASIC0.38□□□□□ -2.35
SHANK1Q9Y566 AL136317.1-201ENST00000612653 226 ntBASIC0.38□□□□□ -2.35
SHANK1Q9Y566 CXADR-202ENST00000356275 270 ntTSL 1 (best) BASIC0.38□□□□□ -2.35
SHANK1Q9Y566 RNA5SP368-201ENST00000364298 116 ntBASIC0.38□□□□□ -2.35
SHANK1Q9Y566 RNU6-1335P-201ENST00000365426 107 ntBASIC0.38□□□□□ -2.35
SHANK1Q9Y566 Y_RNA.618-201ENST00000410949 107 ntBASIC0.38□□□□□ -2.35
SHANK1Q9Y566 AC108676.2-201ENST00000605225 163 ntBASIC0.38□□□□□ -2.35
SHANK1Q9Y566 MTND1P7-201ENST00000632801 297 ntBASIC0.38□□□□□ -2.35
SHANK1Q9Y566 LRRIQ3-204ENST00000395089 2673 ntAPPRIS P2 TSL 5 BASIC0.37□□□□□ -2.35
SHANK1Q9Y566 DEFB131A-201ENST00000334879 213 ntAPPRIS P1 TSL 1 (best) BASIC0.37□□□□□ -2.35
SHANK1Q9Y566 MIR18A-201ENST00000362310 71 ntBASIC0.37□□□□□ -2.35
SHANK1Q9Y566 SNORD95.1-201ENST00000364099 68 ntBASIC0.37□□□□□ -2.35
SHANK1Q9Y566 Y_RNA.241-201ENST00000364470 117 ntBASIC0.37□□□□□ -2.35
SHANK1Q9Y566 RNU6-326P-201ENST00000365480 107 ntBASIC0.37□□□□□ -2.35
SHANK1Q9Y566 Y_RNA.489-201ENST00000384410 101 ntBASIC0.37□□□□□ -2.35
SHANK1Q9Y566 RNU6-110P-201ENST00000384508 104 ntBASIC0.37□□□□□ -2.35
SHANK1Q9Y566 MTND2P23-201ENST00000422990 651 ntBASIC0.37□□□□□ -2.35
SHANK1Q9Y566 AC244023.1-201ENST00000426884 112 ntBASIC0.37□□□□□ -2.35
SHANK1Q9Y566 RNU6-893P-201ENST00000458841 100 ntBASIC0.37□□□□□ -2.35
SHANK1Q9Y566 PSMC1P5-201ENST00000512850 177 ntBASIC0.37□□□□□ -2.35
SHANK1Q9Y566 AC018659.1-201ENST00000551083 169 ntBASIC0.37□□□□□ -2.35
SHANK1Q9Y566 AC079466.2-201ENST00000585394 185 ntTSL 5 BASIC0.37□□□□□ -2.35
SHANK1Q9Y566 AC242498.1-201ENST00000604134 111 ntBASIC0.37□□□□□ -2.35
SHANK1Q9Y566 RNU2-4P-201ENST00000606190 192 ntBASIC0.37□□□□□ -2.35
SHANK1Q9Y566 C9orf84-205ENST00000394779 5060 ntAPPRIS ALT2 TSL 2 BASIC0.37□□□□□ -2.35
SHANK1Q9Y566 Y_RNA.170-201ENST00000363746 110 ntBASIC0.36□□□□□ -2.35
SHANK1Q9Y566 Y_RNA.203-201ENST00000364106 102 ntBASIC0.36□□□□□ -2.35
SHANK1Q9Y566 SNORD24-201ENST00000383884 75 ntBASIC0.36□□□□□ -2.35
SHANK1Q9Y566 Y_RNA.515-201ENST00000384535 112 ntBASIC0.36□□□□□ -2.35
SHANK1Q9Y566 MIR624-201ENST00000385217 97 ntBASIC0.36□□□□□ -2.35
SHANK1Q9Y566 SEPT7P4-201ENST00000437076 306 ntBASIC0.36□□□□□ -2.35
SHANK1Q9Y566 AC002429.1-201ENST00000437672 148 ntBASIC0.36□□□□□ -2.35
SHANK1Q9Y566 AL157398.1-201ENST00000452981 186 ntBASIC0.36□□□□□ -2.35
SHANK1Q9Y566 RNU7-102P-201ENST00000458948 62 ntBASIC0.36□□□□□ -2.35
SHANK1Q9Y566 Y_RNA.720-201ENST00000517166 92 ntBASIC0.36□□□□□ -2.35
SHANK1Q9Y566 MIR4305-201ENST00000583252 102 ntBASIC0.36□□□□□ -2.35
SHANK1Q9Y566 AC072026.1-201ENST00000605023 201 ntBASIC0.36□□□□□ -2.35
SHANK1Q9Y566 AC104465.1-201ENST00000611365 139 ntBASIC0.36□□□□□ -2.35
SHANK1Q9Y566 MIR1-1-201ENST00000362147 71 ntBASIC0.36□□□□□ -2.35
SHANK1Q9Y566 Y_RNA.149-201ENST00000363558 117 ntBASIC0.36□□□□□ -2.35
SHANK1Q9Y566 Y_RNA.185-201ENST00000363894 100 ntBASIC0.36□□□□□ -2.35
SHANK1Q9Y566 IL6ST-202ENST00000381286 201 ntTSL 1 (best) BASIC0.36□□□□□ -2.35
SHANK1Q9Y566 Y_RNA.454-201ENST00000384224 113 ntBASIC0.36□□□□□ -2.35
SHANK1Q9Y566 TRAJ1-201ENST00000390536 62 ntAPPRIS P1 BASIC0.36□□□□□ -2.35
SHANK1Q9Y566 MIR1257-201ENST00000408490 117 ntBASIC0.36□□□□□ -2.35
SHANK1Q9Y566 RNU6ATAC42P-201ENST00000408637 95 ntBASIC0.36□□□□□ -2.35
SHANK1Q9Y566 AC244098.3-201ENST00000424803 96 ntBASIC0.36□□□□□ -2.35
SHANK1Q9Y566 RNU6-1194P-201ENST00000516208 104 ntBASIC0.36□□□□□ -2.35
SHANK1Q9Y566 AC010177.1-201ENST00000547819 366 ntTSL 3 BASIC0.36□□□□□ -2.35
SHANK1Q9Y566 C18orf54-201ENST00000300091 5237 ntAPPRIS P1 TSL 1 (best) BASIC0.35□□□□□ -2.35
SHANK1Q9Y566 Y_RNA.293-201ENST00000364908 93 ntBASIC0.35□□□□□ -2.35
SHANK1Q9Y566 RNU6-643P-201ENST00000384018 107 ntBASIC0.35□□□□□ -2.35
SHANK1Q9Y566 EBAG9-207ENST00000531677 777 ntTSL 1 (best) BASIC0.35□□□□□ -2.35
SHANK1Q9Y566 AC023827.1-201ENST00000569247 97 ntBASIC0.35□□□□□ -2.35
SHANK1Q9Y566 MIR3129-201ENST00000581095 76 ntBASIC0.35□□□□□ -2.35
SHANK1Q9Y566 MIR4514-201ENST00000581410 57 ntBASIC0.35□□□□□ -2.35
SHANK1Q9Y566 AC012433.1-201ENST00000588916 398 ntBASIC0.35□□□□□ -2.35
SHANK1Q9Y566 AC009779.6-201ENST00000603972 165 ntBASIC0.35□□□□□ -2.35
SHANK1Q9Y566 SNORA36.2-201ENST00000384004 127 ntBASIC0.35□□□□□ -2.35
SHANK1Q9Y566 Y_RNA.556-201ENST00000384677 113 ntBASIC0.35□□□□□ -2.35
SHANK1Q9Y566 RNU2-38P-201ENST00000410856 79 ntBASIC0.35□□□□□ -2.35
SHANK1Q9Y566 MTATP8P1-201ENST00000467115 207 ntBASIC0.35□□□□□ -2.35
SHANK1Q9Y566 MTND1P19-201ENST00000511780 315 ntBASIC0.35□□□□□ -2.35
SHANK1Q9Y566 RNU6-1110P-201ENST00000516462 101 ntBASIC0.35□□□□□ -2.35
SHANK1Q9Y566 AL353621.2-201ENST00000605340 133 ntBASIC0.35□□□□□ -2.35
SHANK1Q9Y566 MIR6717-201ENST00000622747 73 ntBASIC0.35□□□□□ -2.35
SHANK1Q9Y566 Y_RNA.459-201ENST00000384251 102 ntBASIC0.34□□□□□ -2.36
SHANK1Q9Y566 Y_RNA.572-201ENST00000384757 98 ntBASIC0.34□□□□□ -2.36
SHANK1Q9Y566 RNU6-1319P-201ENST00000390855 104 ntBASIC0.34□□□□□ -2.36
SHANK1Q9Y566 RNU6-747P-201ENST00000390928 104 ntBASIC0.34□□□□□ -2.36
SHANK1Q9Y566 RNU6-1228P-201ENST00000391014 107 ntBASIC0.34□□□□□ -2.36
SHANK1Q9Y566 RNU6-241P-201ENST00000391148 104 ntBASIC0.34□□□□□ -2.36
SHANK1Q9Y566 RNU6-177P-201ENST00000411257 104 ntBASIC0.34□□□□□ -2.36
SHANK1Q9Y566 AC067940.1-201ENST00000458411 300 ntBASIC0.34□□□□□ -2.36
SHANK1Q9Y566 Y_RNA.680-201ENST00000516441 93 ntBASIC0.34□□□□□ -2.36
SHANK1Q9Y566 RNU7-70P-201ENST00000516941 66 ntBASIC0.34□□□□□ -2.36
SHANK1Q9Y566 AC133485.4-201ENST00000561835 220 ntBASIC0.34□□□□□ -2.36
SHANK1Q9Y566 AC138907.4-201ENST00000570107 226 ntBASIC0.34□□□□□ -2.36
SHANK1Q9Y566 AC004148.1-201ENST00000571506 398 ntTSL 5 BASIC0.34□□□□□ -2.36
SHANK1Q9Y566 ZNF518A-209ENST00000614149 7911 ntAPPRIS P1 TSL 5 BASIC0.34□□□□□ -2.36
SHANK1Q9Y566 Y_RNA.288-201ENST00000364854 92 ntBASIC0.33□□□□□ -2.36
SHANK1Q9Y566 Y_RNA.357-201ENST00000365487 109 ntBASIC0.33□□□□□ -2.36
SHANK1Q9Y566 RNU6-211P-201ENST00000384047 107 ntBASIC0.33□□□□□ -2.36
SHANK1Q9Y566 Y_RNA.435-201ENST00000384095 112 ntBASIC0.33□□□□□ -2.36
SHANK1Q9Y566 MIR518F-201ENST00000384973 87 ntBASIC0.33□□□□□ -2.36
SHANK1Q9Y566 Y_RNA.626-201ENST00000411288 95 ntBASIC0.33□□□□□ -2.36
SHANK1Q9Y566 AL512326.2-201ENST00000426359 151 ntBASIC0.33□□□□□ -2.36
SHANK1Q9Y566 AC104692.1-201ENST00000472406 90 ntBASIC0.33□□□□□ -2.36
SHANK1Q9Y566 MIR3149-201ENST00000584629 83 ntBASIC0.33□□□□□ -2.36
SHANK1Q9Y566 AC078938.1-201ENST00000620993 318 ntBASIC0.33□□□□□ -2.36
SHANK1Q9Y566 AC092634.7-201ENST00000621022 103 ntBASIC0.33□□□□□ -2.36
SHANK1Q9Y566 Y_RNA.83-201ENST00000363005 113 ntBASIC0.33□□□□□ -2.36
SHANK1Q9Y566 Y_RNA.457-201ENST00000384237 111 ntBASIC0.33□□□□□ -2.36
SHANK1Q9Y566 RNU6-381P-201ENST00000391259 108 ntBASIC0.33□□□□□ -2.36
SHANK1Q9Y566 RNU6-1299P-201ENST00000516316 100 ntBASIC0.33□□□□□ -2.36
SHANK1Q9Y566 MIR4431-201ENST00000579990 94 ntBASIC0.33□□□□□ -2.36
SHANK1Q9Y566 AC141273.2-201ENST00000618989 130 ntBASIC0.33□□□□□ -2.36
SHANK1Q9Y566 Y_RNA.447-201ENST00000384184 113 ntBASIC0.32□□□□□ -2.36
SHANK1Q9Y566 Y_RNA.542-201ENST00000384641 111 ntBASIC0.32□□□□□ -2.36
SHANK1Q9Y566 RNU6-535P-201ENST00000384722 107 ntBASIC0.32□□□□□ -2.36
Retrieved 100 of 98,524 protein–RNA pairs in 13.7 ms