Protein–RNA interactions for Protein: Q9NXS3

KLHL28, Kelch-like protein 28, humanhuman

Predictions only

Length 571 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KLHL28Q9NXS3 RNU6-238P-201ENST00000363313 106 ntBASIC0.17□□□□□ -2.38
KLHL28Q9NXS3 SNORA36.1-201ENST00000363424 132 ntBASIC0.17□□□□□ -2.38
KLHL28Q9NXS3 RNA5SP117-201ENST00000365294 118 ntBASIC0.17□□□□□ -2.38
KLHL28Q9NXS3 SNORA8.2-201ENST00000384372 139 ntBASIC0.17□□□□□ -2.38
KLHL28Q9NXS3 Y_RNA.604-201ENST00000410574 102 ntBASIC0.17□□□□□ -2.38
KLHL28Q9NXS3 RNU4-83P-201ENST00000410863 133 ntBASIC0.17□□□□□ -2.38
KLHL28Q9NXS3 Y_RNA.679-201ENST00000516416 91 ntBASIC0.17□□□□□ -2.38
KLHL28Q9NXS3 RNU6-635P-201ENST00000516651 102 ntBASIC0.17□□□□□ -2.38
KLHL28Q9NXS3 AL122017.1-202ENST00000570612 319 ntTSL 5 BASIC0.17□□□□□ -2.38
KLHL28Q9NXS3 MIR4282-201ENST00000583613 67 ntBASIC0.17□□□□□ -2.38
KLHL28Q9NXS3 MIR5197-201ENST00000583721 112 ntBASIC0.17□□□□□ -2.38
KLHL28Q9NXS3 AL442067.1-201ENST00000613261 223 ntBASIC0.17□□□□□ -2.38
KLHL28Q9NXS3 MIR6718-201ENST00000616153 80 ntBASIC0.17□□□□□ -2.38
KLHL28Q9NXS3 AL596211.1-201ENST00000569873 2277 ntBASIC0.17□□□□□ -2.38
KLHL28Q9NXS3 Y_RNA.13-201ENST00000362403 112 ntBASIC0.16□□□□□ -2.38
KLHL28Q9NXS3 RNA5SP257-201ENST00000363023 116 ntBASIC0.16□□□□□ -2.38
KLHL28Q9NXS3 SNORD118-201ENST00000363593 134 ntBASIC0.16□□□□□ -2.38
KLHL28Q9NXS3 Y_RNA.176-201ENST00000363815 109 ntBASIC0.16□□□□□ -2.38
KLHL28Q9NXS3 Y_RNA.567-201ENST00000384736 106 ntBASIC0.16□□□□□ -2.38
KLHL28Q9NXS3 MIR644A-201ENST00000385262 94 ntBASIC0.16□□□□□ -2.38
KLHL28Q9NXS3 RNU6ATAC4P-201ENST00000387446 126 ntBASIC0.16□□□□□ -2.38
KLHL28Q9NXS3 U8.15-201ENST00000390947 134 ntBASIC0.16□□□□□ -2.38
KLHL28Q9NXS3 RNA5SP63-201ENST00000391225 112 ntBASIC0.16□□□□□ -2.38
KLHL28Q9NXS3 AC096949.1-201ENST00000412047 152 ntBASIC0.16□□□□□ -2.38
KLHL28Q9NXS3 AL136320.1-201ENST00000417273 430 ntTSL 3 BASIC0.16□□□□□ -2.38
KLHL28Q9NXS3 AL135790.1-201ENST00000427161 157 ntTSL 3 BASIC0.16□□□□□ -2.38
KLHL28Q9NXS3 SEPT7P4-201ENST00000437076 306 ntBASIC0.16□□□□□ -2.38
KLHL28Q9NXS3 AC022523.2-201ENST00000561045 150 ntBASIC0.16□□□□□ -2.38
KLHL28Q9NXS3 MIR335-201ENST00000362173 94 ntBASIC0.15□□□□□ -2.39
KLHL28Q9NXS3 Y_RNA.430-201ENST00000384081 110 ntBASIC0.15□□□□□ -2.39
KLHL28Q9NXS3 Y_RNA.542-201ENST00000384641 111 ntBASIC0.15□□□□□ -2.39
KLHL28Q9NXS3 RNU6-713P-201ENST00000384761 107 ntBASIC0.15□□□□□ -2.39
KLHL28Q9NXS3 TRAJ2-201ENST00000390535 66 ntAPPRIS P1 BASIC0.15□□□□□ -2.39
KLHL28Q9NXS3 Y_RNA.618-201ENST00000410949 107 ntBASIC0.15□□□□□ -2.39
KLHL28Q9NXS3 SNORD71-201ENST00000411292 86 ntBASIC0.15□□□□□ -2.39
KLHL28Q9NXS3 RNU7-80P-201ENST00000459562 61 ntBASIC0.15□□□□□ -2.39
KLHL28Q9NXS3 AC011921.3-201ENST00000605540 361 ntBASIC0.15□□□□□ -2.39
KLHL28Q9NXS3 AC078938.1-201ENST00000620993 318 ntBASIC0.15□□□□□ -2.39
KLHL28Q9NXS3 Y_RNA.76-201ENST00000362931 109 ntBASIC0.14□□□□□ -2.39
KLHL28Q9NXS3 RNU6-403P-201ENST00000363163 104 ntBASIC0.14□□□□□ -2.39
KLHL28Q9NXS3 RNA5SP62-201ENST00000363457 110 ntBASIC0.14□□□□□ -2.39
KLHL28Q9NXS3 RNU4-17P-201ENST00000365598 141 ntBASIC0.14□□□□□ -2.39
KLHL28Q9NXS3 RNU6-1227P-201ENST00000383981 107 ntBASIC0.14□□□□□ -2.39
KLHL28Q9NXS3 RNU6-472P-201ENST00000384299 107 ntBASIC0.14□□□□□ -2.39
KLHL28Q9NXS3 Y_RNA.588-201ENST00000391254 102 ntBASIC0.14□□□□□ -2.39
KLHL28Q9NXS3 RNA5SP237-201ENST00000410414 113 ntBASIC0.14□□□□□ -2.39
KLHL28Q9NXS3 RNY3P16-201ENST00000516338 101 ntBASIC0.14□□□□□ -2.39
KLHL28Q9NXS3 AC141846.1-201ENST00000568348 142 ntBASIC0.14□□□□□ -2.39
KLHL28Q9NXS3 AC044792.1-201ENST00000593294 196 ntBASIC0.14□□□□□ -2.39
KLHL28Q9NXS3 AL365205.2-201ENST00000594586 68 ntBASIC0.14□□□□□ -2.39
KLHL28Q9NXS3 MIR8062-201ENST00000621515 85 ntBASIC0.14□□□□□ -2.39
KLHL28Q9NXS3 MIR6841-201ENST00000637129 72 ntBASIC0.14□□□□□ -2.39
KLHL28Q9NXS3 Y_RNA.251-201ENST00000364551 99 ntBASIC0.13□□□□□ -2.39
KLHL28Q9NXS3 RNU6-728P-201ENST00000365375 104 ntBASIC0.13□□□□□ -2.39
KLHL28Q9NXS3 RNU6-1292P-201ENST00000383856 107 ntBASIC0.13□□□□□ -2.39
KLHL28Q9NXS3 RNU6-815P-201ENST00000384080 113 ntBASIC0.13□□□□□ -2.39
KLHL28Q9NXS3 Y_RNA.461-201ENST00000384263 103 ntBASIC0.13□□□□□ -2.39
KLHL28Q9NXS3 MIR1295A-201ENST00000408463 79 ntBASIC0.13□□□□□ -2.39
KLHL28Q9NXS3 RNA5SP261-201ENST00000410536 106 ntBASIC0.13□□□□□ -2.39
KLHL28Q9NXS3 RNU6-863P-201ENST00000515989 104 ntBASIC0.13□□□□□ -2.39
KLHL28Q9NXS3 MIR4491-201ENST00000581087 68 ntBASIC0.13□□□□□ -2.39
KLHL28Q9NXS3 AC021613.1-201ENST00000623880 111 ntBASIC0.13□□□□□ -2.39
KLHL28Q9NXS3 Y_RNA.32-201ENST00000362589 110 ntBASIC0.12□□□□□ -2.39
KLHL28Q9NXS3 SNORA22.1-201ENST00000362701 134 ntBASIC0.12□□□□□ -2.39
KLHL28Q9NXS3 RNU4-16P-201ENST00000364737 141 ntBASIC0.12□□□□□ -2.39
KLHL28Q9NXS3 Y_RNA.277-201ENST00000364754 102 ntBASIC0.12□□□□□ -2.39
KLHL28Q9NXS3 Y_RNA.396-201ENST00000383949 103 ntBASIC0.12□□□□□ -2.39
KLHL28Q9NXS3 Y_RNA.454-201ENST00000384224 113 ntBASIC0.12□□□□□ -2.39
KLHL28Q9NXS3 RNA5SP299-201ENST00000391203 116 ntBASIC0.12□□□□□ -2.39
KLHL28Q9NXS3 MIR1302-6-201ENST00000408466 90 ntBASIC0.12□□□□□ -2.39
KLHL28Q9NXS3 RNU4-43P-201ENST00000410628 137 ntBASIC0.12□□□□□ -2.39
KLHL28Q9NXS3 RPL39P25-201ENST00000449384 154 ntBASIC0.12□□□□□ -2.39
KLHL28Q9NXS3 SNORA31.14-201ENST00000516728 116 ntBASIC0.12□□□□□ -2.39
KLHL28Q9NXS3 SCARNA15-202ENST00000516881 127 ntBASIC0.12□□□□□ -2.39
KLHL28Q9NXS3 RNU6-1258P-201ENST00000516911 111 ntBASIC0.12□□□□□ -2.39
KLHL28Q9NXS3 IGHVIII-67-2-201ENST00000519849 88 ntBASIC0.12□□□□□ -2.39
KLHL28Q9NXS3 AP003327.1-201ENST00000529684 127 ntBASIC0.12□□□□□ -2.39
KLHL28Q9NXS3 AP003072.1-201ENST00000531740 145 ntBASIC0.12□□□□□ -2.39
KLHL28Q9NXS3 MIR3152-201ENST00000579801 74 ntBASIC0.12□□□□□ -2.39
KLHL28Q9NXS3 DLEU2_5.2-201ENST00000610606 84 ntBASIC0.12□□□□□ -2.39
KLHL28Q9NXS3 MIR6082-201ENST00000613604 109 ntBASIC0.12□□□□□ -2.39
KLHL28Q9NXS3 uc_338.16-201ENST00000621804 95 ntBASIC0.12□□□□□ -2.39
KLHL28Q9NXS3 Y_RNA.54-201ENST00000362766 105 ntBASIC0.11□□□□□ -2.39
KLHL28Q9NXS3 RNU6-978P-201ENST00000364371 103 ntBASIC0.11□□□□□ -2.39
KLHL28Q9NXS3 Y_RNA.262-201ENST00000364641 102 ntBASIC0.11□□□□□ -2.39
KLHL28Q9NXS3 Y_RNA.518-201ENST00000384552 113 ntBASIC0.11□□□□□ -2.39
KLHL28Q9NXS3 SNORA79-201ENST00000408376 140 ntBASIC0.11□□□□□ -2.39
KLHL28Q9NXS3 AL512326.2-201ENST00000426359 151 ntBASIC0.11□□□□□ -2.39
KLHL28Q9NXS3 AL121914.1-201ENST00000450188 156 ntBASIC0.11□□□□□ -2.39
KLHL28Q9NXS3 MTND5P34-201ENST00000568888 325 ntBASIC0.11□□□□□ -2.39
KLHL28Q9NXS3 VPS35-212ENST00000640313 141 ntTSL 5 BASIC0.11□□□□□ -2.39
KLHL28Q9NXS3 DEFB131A-201ENST00000334879 213 ntAPPRIS P1 TSL 1 (best) BASIC0.1□□□□□ -2.39
KLHL28Q9NXS3 Y_RNA.292-201ENST00000364904 97 ntBASIC0.1□□□□□ -2.39
KLHL28Q9NXS3 RNU6-949P-201ENST00000384040 107 ntBASIC0.1□□□□□ -2.39
KLHL28Q9NXS3 SNORA18-201ENST00000384416 132 ntBASIC0.1□□□□□ -2.39
KLHL28Q9NXS3 SNORA72.6-201ENST00000384520 129 ntBASIC0.1□□□□□ -2.39
KLHL28Q9NXS3 SNORA20-201ENST00000384662 132 ntBASIC0.1□□□□□ -2.39
KLHL28Q9NXS3 Y_RNA.574-201ENST00000384766 95 ntBASIC0.1□□□□□ -2.39
KLHL28Q9NXS3 MIR548F4-201ENST00000408515 105 ntBASIC0.1□□□□□ -2.39
KLHL28Q9NXS3 AC073261.1-201ENST00000429409 121 ntBASIC0.1□□□□□ -2.39
Retrieved 100 of 98,524 protein–RNA pairs in 233.6 ms