Protein–RNA interactions for Protein: Q9NVE4

CCDC87, Coiled-coil domain-containing protein 87, humanhuman

Predictions only

Length 849 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC87Q9NVE4 MIR3935-201ENST00000583472 104 ntBASIC2.38□□□□□ -2.03
CCDC87Q9NVE4 MIR8081-201ENST00000611533 95 ntBASIC2.38□□□□□ -2.03
CCDC87Q9NVE4 TBL1XR1-208ENST00000430069 7948 ntAPPRIS P1 TSL 1 (best) BASIC2.38□□□□□ -2.03
CCDC87Q9NVE4 Y_RNA.466-201ENST00000384294 113 ntBASIC2.37□□□□□ -2.03
CCDC87Q9NVE4 SNORA67.5-201ENST00000391036 107 ntBASIC2.37□□□□□ -2.03
CCDC87Q9NVE4 HMGN1P33-201ENST00000432945 451 ntBASIC2.37□□□□□ -2.03
CCDC87Q9NVE4 RNU6-250P-201ENST00000516958 103 ntBASIC2.37□□□□□ -2.03
CCDC87Q9NVE4 FAS-AS1.2-201ENST00000620386 170 ntBASIC2.37□□□□□ -2.03
CCDC87Q9NVE4 TEX15-203ENST00000638951 11341 ntAPPRIS P1 TSL 5 BASIC2.37□□□□□ -2.03
CCDC87Q9NVE4 AC079804.2-201ENST00000490376 200 ntBASIC2.36□□□□□ -2.03
CCDC87Q9NVE4 SNORD111.1-201ENST00000516421 86 ntBASIC2.36□□□□□ -2.03
CCDC87Q9NVE4 SNORA44.1-201ENST00000517031 108 ntBASIC2.36□□□□□ -2.03
CCDC87Q9NVE4 AP001318.4-201ENST00000616637 121 ntBASIC2.36□□□□□ -2.03
CCDC87Q9NVE4 ATP13A3-201ENST00000256031 7322 ntAPPRIS P1 TSL 5 BASIC2.35□□□□□ -2.03
CCDC87Q9NVE4 RNU4-36P-201ENST00000364294 144 ntBASIC2.35□□□□□ -2.03
CCDC87Q9NVE4 RNU4-67P-201ENST00000364569 141 ntBASIC2.35□□□□□ -2.03
CCDC87Q9NVE4 RNU6-409P-201ENST00000384114 104 ntBASIC2.35□□□□□ -2.03
CCDC87Q9NVE4 AC025033.1-201ENST00000463883 194 ntBASIC2.35□□□□□ -2.03
CCDC87Q9NVE4 RNU6-904P-201ENST00000516206 101 ntBASIC2.35□□□□□ -2.03
CCDC87Q9NVE4 SNORA40.13-201ENST00000516379 120 ntBASIC2.35□□□□□ -2.03
CCDC87Q9NVE4 SPTSSB-205ENST00000620149 231 ntAPPRIS P1 BASIC2.35□□□□□ -2.03
CCDC87Q9NVE4 Metazoa_SRP.32-201ENST00000622685 286 ntBASIC2.35□□□□□ -2.03
CCDC87Q9NVE4 AC008163.1-205ENST00000413944 4649 ntTSL 1 (best) BASIC2.35□□□□□ -2.03
CCDC87Q9NVE4 ZDBF2-202ENST00000611847 9890 ntTSL 5 BASIC2.35□□□□□ -2.03
CCDC87Q9NVE4 SI-201ENST00000264382 6011 ntAPPRIS P1 TSL 1 (best) BASIC2.34□□□□□ -2.03
CCDC87Q9NVE4 Y_RNA.10-201ENST00000362371 110 ntBASIC2.34□□□□□ -2.03
CCDC87Q9NVE4 Y_RNA.155-201ENST00000363632 101 ntBASIC2.34□□□□□ -2.03
CCDC87Q9NVE4 SNORD38B-201ENST00000384690 67 ntBASIC2.34□□□□□ -2.03
CCDC87Q9NVE4 SNORD41-201ENST00000386967 70 ntBASIC2.34□□□□□ -2.03
CCDC87Q9NVE4 RNU6-733P-201ENST00000410759 104 ntBASIC2.34□□□□□ -2.03
CCDC87Q9NVE4 RNU6-158P-201ENST00000517104 100 ntBASIC2.34□□□□□ -2.03
CCDC87Q9NVE4 Y_RNA.773-201ENST00000607168 90 ntBASIC2.34□□□□□ -2.03
CCDC87Q9NVE4 GHRLOS.1-201ENST00000610995 70 ntBASIC2.34□□□□□ -2.03
CCDC87Q9NVE4 MIR8065-201ENST00000620577 100 ntBASIC2.34□□□□□ -2.03
CCDC87Q9NVE4 SNORD38B-202ENST00000625943 69 ntBASIC2.34□□□□□ -2.03
CCDC87Q9NVE4 RNU6-1255P-201ENST00000363434 112 ntBASIC2.33□□□□□ -2.04
CCDC87Q9NVE4 RNU6-602P-201ENST00000411155 105 ntBASIC2.33□□□□□ -2.04
CCDC87Q9NVE4 RNU7-41P-201ENST00000515917 61 ntBASIC2.33□□□□□ -2.04
CCDC87Q9NVE4 DEFB131E-201ENST00000532329 154 ntBASIC2.33□□□□□ -2.04
CCDC87Q9NVE4 MIR548AO-201ENST00000579992 96 ntBASIC2.33□□□□□ -2.04
CCDC87Q9NVE4 MIR4303-201ENST00000581299 66 ntBASIC2.33□□□□□ -2.04
CCDC87Q9NVE4 MIR2052-201ENST00000636055 55 ntBASIC2.33□□□□□ -2.04
CCDC87Q9NVE4 LRRCC1-202ENST00000414626 4493 ntAPPRIS ALT2 TSL 1 (best) BASIC2.32□□□□□ -2.04
CCDC87Q9NVE4 SNORD33-201ENST00000362761 85 ntBASIC2.32□□□□□ -2.04
CCDC87Q9NVE4 Y_RNA.348-201ENST00000365403 103 ntBASIC2.32□□□□□ -2.04
CCDC87Q9NVE4 AC245047.7-201ENST00000440265 293 ntBASIC2.32□□□□□ -2.04
CCDC87Q9NVE4 HSPE1P24-201ENST00000450782 238 ntBASIC2.32□□□□□ -2.04
CCDC87Q9NVE4 RNA5SP233-201ENST00000459153 113 ntBASIC2.32□□□□□ -2.04
CCDC87Q9NVE4 RNU6-1018P-201ENST00000516577 106 ntBASIC2.32□□□□□ -2.04
CCDC87Q9NVE4 RNU6-922P-201ENST00000516753 99 ntBASIC2.32□□□□□ -2.04
CCDC87Q9NVE4 AC141557.1-201ENST00000540982 400 ntBASIC2.32□□□□□ -2.04
CCDC87Q9NVE4 MIR4694-201ENST00000578534 80 ntBASIC2.32□□□□□ -2.04
CCDC87Q9NVE4 MIR1255B1-201ENST00000636325 63 ntBASIC2.32□□□□□ -2.04
CCDC87Q9NVE4 RNY3P2-201ENST00000362918 102 ntBASIC2.31□□□□□ -2.04
CCDC87Q9NVE4 RNA5SP37-201ENST00000365420 130 ntBASIC2.31□□□□□ -2.04
CCDC87Q9NVE4 RNU4-52P-201ENST00000384209 138 ntBASIC2.31□□□□□ -2.04
CCDC87Q9NVE4 MIR590-201ENST00000385008 97 ntBASIC2.31□□□□□ -2.04
CCDC87Q9NVE4 ATP6V0E1P3-201ENST00000420036 246 ntBASIC2.31□□□□□ -2.04
CCDC87Q9NVE4 snoU13.18-201ENST00000459483 104 ntBASIC2.31□□□□□ -2.04
CCDC87Q9NVE4 RNU6-970P-201ENST00000516312 107 ntBASIC2.31□□□□□ -2.04
CCDC87Q9NVE4 MIR4255-201ENST00000579351 72 ntBASIC2.31□□□□□ -2.04
CCDC87Q9NVE4 BX248123.2-201ENST00000606318 124 ntBASIC2.31□□□□□ -2.04
CCDC87Q9NVE4 AL627230.6-201ENST00000611129 280 ntBASIC2.31□□□□□ -2.04
CCDC87Q9NVE4 MIR6840-201ENST00000611937 71 ntBASIC2.31□□□□□ -2.04
CCDC87Q9NVE4 AP000553.5-201ENST00000641933 54 ntBASIC2.31□□□□□ -2.04
CCDC87Q9NVE4 RNU6-1099P-201ENST00000363533 107 ntBASIC2.3□□□□□ -2.04
CCDC87Q9NVE4 RNU6-616P-201ENST00000384353 107 ntBASIC2.3□□□□□ -2.04
CCDC87Q9NVE4 MIR30A-201ENST00000385092 71 ntBASIC2.3□□□□□ -2.04
CCDC87Q9NVE4 AC009474.2-201ENST00000451383 136 ntBASIC2.3□□□□□ -2.04
CCDC87Q9NVE4 snoU13.9-201ENST00000458927 103 ntBASIC2.3□□□□□ -2.04
CCDC87Q9NVE4 AC090255.1-201ENST00000495779 349 ntBASIC2.3□□□□□ -2.04
CCDC87Q9NVE4 RNU7-35P-201ENST00000517174 62 ntBASIC2.3□□□□□ -2.04
CCDC87Q9NVE4 AC103810.8-201ENST00000607347 118 ntBASIC2.3□□□□□ -2.04
CCDC87Q9NVE4 Y_RNA.360-201ENST00000365512 102 ntBASIC2.29□□□□□ -2.04
CCDC87Q9NVE4 SNORA32-201ENST00000384072 121 ntBASIC2.29□□□□□ -2.04
CCDC87Q9NVE4 RNU6-905P-201ENST00000384434 107 ntBASIC2.29□□□□□ -2.04
CCDC87Q9NVE4 Y_RNA.601-201ENST00000410500 113 ntBASIC2.29□□□□□ -2.04
CCDC87Q9NVE4 HMGN2P38-201ENST00000423806 265 ntBASIC2.29□□□□□ -2.04
CCDC87Q9NVE4 AL596028.1-201ENST00000326971 197 ntBASIC2.28□□□□□ -2.04
CCDC87Q9NVE4 Y_RNA.93-201ENST00000363066 109 ntBASIC2.28□□□□□ -2.04
CCDC87Q9NVE4 Y_RNA.369-201ENST00000365568 117 ntBASIC2.28□□□□□ -2.04
CCDC87Q9NVE4 SNORA18-201ENST00000384416 132 ntBASIC2.28□□□□□ -2.04
CCDC87Q9NVE4 RNU6-1086P-201ENST00000410930 100 ntBASIC2.28□□□□□ -2.04
CCDC87Q9NVE4 AL356379.1-201ENST00000414105 126 ntBASIC2.28□□□□□ -2.04
CCDC87Q9NVE4 RPL39P39-201ENST00000455840 151 ntBASIC2.28□□□□□ -2.04
CCDC87Q9NVE4 MIR1270-201ENST00000459320 83 ntBASIC2.28□□□□□ -2.04
CCDC87Q9NVE4 AC036222.2-201ENST00000579033 333 ntTSL 3 BASIC2.28□□□□□ -2.04
CCDC87Q9NVE4 MIR502-201ENST00000606349 86 ntBASIC2.28□□□□□ -2.04
CCDC87Q9NVE4 AL512598.1-201ENST00000610158 273 ntBASIC2.28□□□□□ -2.04
CCDC87Q9NVE4 ZBBX-205ENST00000455345 3185 ntAPPRIS ALT2 TSL 1 (best) BASIC2.27□□□□□ -2.05
CCDC87Q9NVE4 THOC2-216ENST00000491737 4452 ntTSL 5 BASIC2.27□□□□□ -2.05
CCDC87Q9NVE4 Y_RNA.224-201ENST00000364308 111 ntBASIC2.27□□□□□ -2.05
CCDC87Q9NVE4 TRAJ11-201ENST00000390526 60 ntAPPRIS P1 BASIC2.27□□□□□ -2.05
CCDC87Q9NVE4 RNU7-95P-201ENST00000459222 64 ntBASIC2.27□□□□□ -2.05
CCDC87Q9NVE4 RPS27P21-201ENST00000486977 252 ntBASIC2.27□□□□□ -2.05
CCDC87Q9NVE4 SCARNA23-201ENST00000516060 130 ntBASIC2.27□□□□□ -2.05
CCDC87Q9NVE4 RNU1-40P-201ENST00000516816 164 ntBASIC2.27□□□□□ -2.05
CCDC87Q9NVE4 RNU1-97P-201ENST00000516872 164 ntBASIC2.27□□□□□ -2.05
CCDC87Q9NVE4 AC006254.2-201ENST00000603259 279 ntBASIC2.27□□□□□ -2.05
CCDC87Q9NVE4 RNU6-832P-201ENST00000363319 107 ntBASIC2.26□□□□□ -2.05
Retrieved 100 of 98,524 protein–RNA pairs in 100.1 ms