Protein–RNA interactions for Protein: Q9H2Z4

NKX2-4, Homeobox protein Nkx-2.4, humanhuman

Predictions only

Length 354 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-4Q9H2Z4 MIR302D-201ENST00000362275 68 ntBASIC1.91□□□□□ -2.1
NKX2-4Q9H2Z4 SNORD1A-201ENST00000364968 72 ntBASIC1.91□□□□□ -2.1
NKX2-4Q9H2Z4 Y_RNA.470-201ENST00000384307 117 ntBASIC1.91□□□□□ -2.1
NKX2-4Q9H2Z4 RNU6-1065P-201ENST00000384513 106 ntBASIC1.91□□□□□ -2.1
NKX2-4Q9H2Z4 SNORD77B-201ENST00000391112 67 ntBASIC1.91□□□□□ -2.1
NKX2-4Q9H2Z4 RNU6-602P-201ENST00000411155 105 ntBASIC1.91□□□□□ -2.1
NKX2-4Q9H2Z4 MIR3198-2-201ENST00000577868 80 ntBASIC1.91□□□□□ -2.1
NKX2-4Q9H2Z4 MIR3937-201ENST00000580135 106 ntBASIC1.91□□□□□ -2.1
NKX2-4Q9H2Z4 MIR3192-201ENST00000584920 77 ntBASIC1.91□□□□□ -2.1
NKX2-4Q9H2Z4 AL096861.1-201ENST00000610899 123 ntBASIC1.91□□□□□ -2.1
NKX2-4Q9H2Z4 uc_338.28-201ENST00000612082 187 ntBASIC1.91□□□□□ -2.1
NKX2-4Q9H2Z4 UHRF1BP1L-203ENST00000545232 4088 ntTSL 1 (best) BASIC1.9□□□□□ -2.1
NKX2-4Q9H2Z4 RNA5SP37-201ENST00000365420 130 ntBASIC1.9□□□□□ -2.11
NKX2-4Q9H2Z4 SNORD38B-201ENST00000384690 67 ntBASIC1.9□□□□□ -2.11
NKX2-4Q9H2Z4 AC245047.7-201ENST00000440265 293 ntBASIC1.9□□□□□ -2.11
NKX2-4Q9H2Z4 AL031737.1-201ENST00000450125 223 ntBASIC1.9□□□□□ -2.11
NKX2-4Q9H2Z4 RPL39P34-201ENST00000477141 156 ntBASIC1.9□□□□□ -2.11
NKX2-4Q9H2Z4 MIR548AE2-201ENST00000583456 67 ntBASIC1.9□□□□□ -2.11
NKX2-4Q9H2Z4 AL096840.1-201ENST00000603287 93 ntBASIC1.9□□□□□ -2.11
NKX2-4Q9H2Z4 AC087741.2-201ENST00000619415 172 ntBASIC1.9□□□□□ -2.11
NKX2-4Q9H2Z4 SNORD38B-202ENST00000625943 69 ntBASIC1.9□□□□□ -2.11
NKX2-4Q9H2Z4 MIER3-204ENST00000381226 5210 ntAPPRIS ALT1 TSL 1 (best) BASIC1.9□□□□□ -2.11
NKX2-4Q9H2Z4 SI-201ENST00000264382 6011 ntAPPRIS P1 TSL 1 (best) BASIC1.9□□□□□ -2.11
NKX2-4Q9H2Z4 RNU6-392P-201ENST00000364926 101 ntBASIC1.89□□□□□ -2.11
NKX2-4Q9H2Z4 Y_RNA.309-201ENST00000365046 111 ntBASIC1.89□□□□□ -2.11
NKX2-4Q9H2Z4 NMTRQ-TTG12-1-201ENST00000467595 72 ntBASIC1.89□□□□□ -2.11
NKX2-4Q9H2Z4 MIR8065-201ENST00000620577 100 ntBASIC1.89□□□□□ -2.11
NKX2-4Q9H2Z4 PTPRQ-209ENST00000616559 8165 ntTSL 5 BASIC1.89□□□□□ -2.11
NKX2-4Q9H2Z4 AC008163.1-205ENST00000413944 4649 ntTSL 1 (best) BASIC1.89□□□□□ -2.11
NKX2-4Q9H2Z4 RNU6-1014P-201ENST00000383940 103 ntBASIC1.88□□□□□ -2.11
NKX2-4Q9H2Z4 RNU6-147P-201ENST00000383983 107 ntBASIC1.88□□□□□ -2.11
NKX2-4Q9H2Z4 MIR1302-5-201ENST00000408164 150 ntBASIC1.88□□□□□ -2.11
NKX2-4Q9H2Z4 AC090255.1-201ENST00000495779 349 ntBASIC1.88□□□□□ -2.11
NKX2-4Q9H2Z4 AC068339.1-201ENST00000526965 141 ntBASIC1.88□□□□□ -2.11
NKX2-4Q9H2Z4 AL162726.3-218ENST00000636401 95 ntBASIC1.88□□□□□ -2.11
NKX2-4Q9H2Z4 ZGRF1-203ENST00000445203 6529 ntAPPRIS P1 TSL 5 BASIC1.87□□□□□ -2.11
NKX2-4Q9H2Z4 SNORD115-19-201ENST00000363098 82 ntBASIC1.87□□□□□ -2.11
NKX2-4Q9H2Z4 SNORD115-18-201ENST00000363293 82 ntBASIC1.87□□□□□ -2.11
NKX2-4Q9H2Z4 Y_RNA.191-201ENST00000363972 113 ntBASIC1.87□□□□□ -2.11
NKX2-4Q9H2Z4 SNORD115-17-201ENST00000364612 82 ntBASIC1.87□□□□□ -2.11
NKX2-4Q9H2Z4 U8.6-201ENST00000364939 135 ntBASIC1.87□□□□□ -2.11
NKX2-4Q9H2Z4 Y_RNA.323-201ENST00000365157 109 ntBASIC1.87□□□□□ -2.11
NKX2-4Q9H2Z4 SNORA32-201ENST00000384072 121 ntBASIC1.87□□□□□ -2.11
NKX2-4Q9H2Z4 RNU6-106P-201ENST00000384405 107 ntBASIC1.87□□□□□ -2.11
NKX2-4Q9H2Z4 Y_RNA.540-201ENST00000384638 111 ntBASIC1.87□□□□□ -2.11
NKX2-4Q9H2Z4 AC090844.1-201ENST00000422019 156 ntBASIC1.87□□□□□ -2.11
NKX2-4Q9H2Z4 RPL39P25-201ENST00000449384 154 ntBASIC1.87□□□□□ -2.11
NKX2-4Q9H2Z4 RPL30P7-201ENST00000479312 323 ntBASIC1.87□□□□□ -2.11
NKX2-4Q9H2Z4 AC079804.2-201ENST00000490376 200 ntBASIC1.87□□□□□ -2.11
NKX2-4Q9H2Z4 AC007991.3-201ENST00000517623 502 ntTSL 4 BASIC1.87□□□□□ -2.11
NKX2-4Q9H2Z4 MIR4255-201ENST00000579351 72 ntBASIC1.87□□□□□ -2.11
NKX2-4Q9H2Z4 AL645939.4-201ENST00000604495 135 ntBASIC1.87□□□□□ -2.11
NKX2-4Q9H2Z4 hsa-mir-3158-1.1-201ENST00000637571 81 ntBASIC1.87□□□□□ -2.11
NKX2-4Q9H2Z4 KIAA1107-201ENST00000370378 4622 ntTSL 5 BASIC1.86□□□□□ -2.11
NKX2-4Q9H2Z4 SNORA25.3-201ENST00000363205 127 ntBASIC1.86□□□□□ -2.11
NKX2-4Q9H2Z4 Y_RNA.163-201ENST00000363702 113 ntBASIC1.86□□□□□ -2.11
NKX2-4Q9H2Z4 Y_RNA.507-201ENST00000384500 99 ntBASIC1.86□□□□□ -2.11
NKX2-4Q9H2Z4 RNU6-816P-201ENST00000390914 107 ntBASIC1.86□□□□□ -2.11
NKX2-4Q9H2Z4 RNU6-1268P-201ENST00000391214 107 ntBASIC1.86□□□□□ -2.11
NKX2-4Q9H2Z4 RNU6-1239P-201ENST00000391310 107 ntBASIC1.86□□□□□ -2.11
NKX2-4Q9H2Z4 ZNF468-202ENST00000396409 384 ntTSL 5 BASIC1.86□□□□□ -2.11
NKX2-4Q9H2Z4 MIR1912-201ENST00000410389 80 ntBASIC1.86□□□□□ -2.11
NKX2-4Q9H2Z4 RNU6-554P-201ENST00000410466 106 ntBASIC1.86□□□□□ -2.11
NKX2-4Q9H2Z4 RNA5SP489-201ENST00000410986 109 ntBASIC1.86□□□□□ -2.11
NKX2-4Q9H2Z4 MIR5009-201ENST00000578736 100 ntBASIC1.86□□□□□ -2.11
NKX2-4Q9H2Z4 MIR4452-201ENST00000583004 71 ntBASIC1.86□□□□□ -2.11
NKX2-4Q9H2Z4 MUC15-203ENST00000455601 3156 ntAPPRIS P1 TSL 2 BASIC1.85□□□□□ -2.11
NKX2-4Q9H2Z4 MIR450A1-201ENST00000362262 91 ntBASIC1.85□□□□□ -2.11
NKX2-4Q9H2Z4 RNU6-42P-201ENST00000384165 107 ntBASIC1.85□□□□□ -2.11
NKX2-4Q9H2Z4 SNORA18-201ENST00000384416 132 ntBASIC1.85□□□□□ -2.11
NKX2-4Q9H2Z4 AC027119.1-201ENST00000440877 241 ntBASIC1.85□□□□□ -2.11
NKX2-4Q9H2Z4 AC025033.1-201ENST00000463883 194 ntBASIC1.85□□□□□ -2.11
NKX2-4Q9H2Z4 AC008834.1-201ENST00000511612 175 ntBASIC1.85□□□□□ -2.11
NKX2-4Q9H2Z4 RNA5SP480-201ENST00000516840 109 ntBASIC1.85□□□□□ -2.11
NKX2-4Q9H2Z4 MIR3618-201ENST00000580330 88 ntBASIC1.85□□□□□ -2.11
NKX2-4Q9H2Z4 RNU6-94P-201ENST00000607728 107 ntBASIC1.85□□□□□ -2.11
NKX2-4Q9H2Z4 RNU1-42P-201ENST00000364033 160 ntBASIC1.84□□□□□ -2.11
NKX2-4Q9H2Z4 RNU6-342P-201ENST00000384521 104 ntBASIC1.84□□□□□ -2.11
NKX2-4Q9H2Z4 AL365434.1-201ENST00000412362 380 ntTSL 3 BASIC1.84□□□□□ -2.11
NKX2-4Q9H2Z4 RPL31P63-201ENST00000422565 375 ntBASIC1.84□□□□□ -2.11
NKX2-4Q9H2Z4 AL133373.1-201ENST00000497098 94 ntBASIC1.84□□□□□ -2.11
NKX2-4Q9H2Z4 MIR514B-201ENST00000516774 80 ntBASIC1.84□□□□□ -2.11
NKX2-4Q9H2Z4 MIR3613-201ENST00000579844 87 ntBASIC1.84□□□□□ -2.11
NKX2-4Q9H2Z4 AL078603.1-201ENST00000603824 313 ntBASIC1.84□□□□□ -2.11
NKX2-4Q9H2Z4 RMST_2.1-201ENST00000617263 136 ntBASIC1.84□□□□□ -2.11
NKX2-4Q9H2Z4 RNU6-396P-201ENST00000365369 105 ntBASIC1.83□□□□□ -2.12
NKX2-4Q9H2Z4 RNU1-40P-201ENST00000516816 164 ntBASIC1.83□□□□□ -2.12
NKX2-4Q9H2Z4 RNU1-97P-201ENST00000516872 164 ntBASIC1.83□□□□□ -2.12
NKX2-4Q9H2Z4 SNORD53B-201ENST00000577887 78 ntBASIC1.83□□□□□ -2.12
NKX2-4Q9H2Z4 MIR3664-201ENST00000579074 99 ntBASIC1.83□□□□□ -2.12
NKX2-4Q9H2Z4 PRELID3BP2-201ENST00000605362 201 ntBASIC1.83□□□□□ -2.12
NKX2-4Q9H2Z4 Y_RNA.773-201ENST00000607168 90 ntBASIC1.83□□□□□ -2.12
NKX2-4Q9H2Z4 MIR6734-201ENST00000621166 68 ntBASIC1.83□□□□□ -2.12
NKX2-4Q9H2Z4 MIR1255B1-201ENST00000636325 63 ntBASIC1.83□□□□□ -2.12
NKX2-4Q9H2Z4 AL359851.1-201ENST00000569460 4997 ntBASIC1.82□□□□□ -2.12
NKX2-4Q9H2Z4 SNORA16.1-201ENST00000364597 132 ntBASIC1.82□□□□□ -2.12
NKX2-4Q9H2Z4 SNORA51.5-201ENST00000384126 131 ntBASIC1.82□□□□□ -2.12
NKX2-4Q9H2Z4 RNU6-1113P-201ENST00000384348 107 ntBASIC1.82□□□□□ -2.12
NKX2-4Q9H2Z4 RNU6-616P-201ENST00000384353 107 ntBASIC1.82□□□□□ -2.12
NKX2-4Q9H2Z4 RNU6-717P-201ENST00000459076 104 ntBASIC1.82□□□□□ -2.12
Retrieved 100 of 98,524 protein–RNA pairs in 314.3 ms