Protein–RNA interactions for Protein: Q68DE3

USF3, Basic helix-loop-helix domain-containing protein USF3, humanhuman

Predictions only

Length 2,245 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF3Q68DE3 AL353795.2-201ENST00000431804 425 ntTSL 2 BASIC-1.34□□□□□ -2.62
USF3Q68DE3 MTND2P22-201ENST00000444325 1033 ntBASIC-1.34□□□□□ -2.62
USF3Q68DE3 RNU6-470P-201ENST00000515954 104 ntBASIC-1.34□□□□□ -2.62
USF3Q68DE3 Y_RNA.665-201ENST00000516177 98 ntBASIC-1.34□□□□□ -2.62
USF3Q68DE3 MIR4662B-201ENST00000579498 81 ntBASIC-1.34□□□□□ -2.62
USF3Q68DE3 AL021707.8-201ENST00000609428 183 ntBASIC-1.34□□□□□ -2.62
USF3Q68DE3 Y_RNA.381-201ENST00000365666 102 ntBASIC-1.34□□□□□ -2.62
USF3Q68DE3 SNORA40.3-201ENST00000390964 122 ntBASIC-1.34□□□□□ -2.62
USF3Q68DE3 snoU109.3-201ENST00000459477 145 ntBASIC-1.34□□□□□ -2.62
USF3Q68DE3 AC083904.1-201ENST00000487828 231 ntBASIC-1.34□□□□□ -2.62
USF3Q68DE3 RNU6-1038P-201ENST00000516516 104 ntBASIC-1.34□□□□□ -2.62
USF3Q68DE3 Y_RNA.331-201ENST00000365267 102 ntBASIC-1.35□□□□□ -2.63
USF3Q68DE3 RNU6-996P-201ENST00000365438 107 ntBASIC-1.35□□□□□ -2.63
USF3Q68DE3 RNU6-1158P-201ENST00000391167 107 ntBASIC-1.35□□□□□ -2.63
USF3Q68DE3 RNU6-588P-201ENST00000410281 105 ntBASIC-1.35□□□□□ -2.63
USF3Q68DE3 UBE2V1P12-201ENST00000503954 474 ntBASIC-1.35□□□□□ -2.63
USF3Q68DE3 ELOCP32-201ENST00000548625 324 ntBASIC-1.35□□□□□ -2.63
USF3Q68DE3 WT1-AS_8.1-201ENST00000615200 275 ntBASIC-1.35□□□□□ -2.63
USF3Q68DE3 Y_RNA.119-201ENST00000363301 96 ntBASIC-1.35□□□□□ -2.63
USF3Q68DE3 RNU6-522P-201ENST00000364497 107 ntBASIC-1.35□□□□□ -2.63
USF3Q68DE3 SNORA51.5-201ENST00000384126 131 ntBASIC-1.35□□□□□ -2.63
USF3Q68DE3 SNORD61-201ENST00000384252 73 ntBASIC-1.35□□□□□ -2.63
USF3Q68DE3 RNU7-87P-201ENST00000459343 62 ntBASIC-1.35□□□□□ -2.63
USF3Q68DE3 AP001542.1-201ENST00000591314 200 ntBASIC-1.35□□□□□ -2.63
USF3Q68DE3 RNU6-1125P-201ENST00000363601 107 ntBASIC-1.36□□□□□ -2.63
USF3Q68DE3 SNORD114-4-201ENST00000363962 75 ntBASIC-1.36□□□□□ -2.63
USF3Q68DE3 SNORA72.4-201ENST00000384174 132 ntBASIC-1.36□□□□□ -2.63
USF3Q68DE3 RNU6-759P-201ENST00000516740 103 ntBASIC-1.36□□□□□ -2.63
USF3Q68DE3 AC093783.1-201ENST00000612976 329 ntBASIC-1.36□□□□□ -2.63
USF3Q68DE3 AC096733.1-201ENST00000503844 402 ntTSL 3 BASIC-1.36□□□□□ -2.63
USF3Q68DE3 AC108019.1-201ENST00000512540 175 ntBASIC-1.36□□□□□ -2.63
USF3Q68DE3 AC068339.1-201ENST00000526965 141 ntBASIC-1.36□□□□□ -2.63
USF3Q68DE3 AL133368.2-201ENST00000556978 386 ntTSL 3 BASIC-1.36□□□□□ -2.63
USF3Q68DE3 MIR3913-1-201ENST00000577744 102 ntBASIC-1.36□□□□□ -2.63
USF3Q68DE3 EFCAB5-213ENST00000638539 168 ntTSL 5 BASIC-1.36□□□□□ -2.63
USF3Q68DE3 RNU6-801P-201ENST00000364087 105 ntBASIC-1.37□□□□□ -2.63
USF3Q68DE3 RNU6-636P-201ENST00000384598 107 ntBASIC-1.37□□□□□ -2.63
USF3Q68DE3 RNU2-31P-201ENST00000516954 155 ntBASIC-1.37□□□□□ -2.63
USF3Q68DE3 AC055872.1-201ENST00000570978 278 ntBASIC-1.37□□□□□ -2.63
USF3Q68DE3 MTATP6P24-201ENST00000576835 677 ntBASIC-1.37□□□□□ -2.63
USF3Q68DE3 MIR4500-201ENST00000579472 76 ntBASIC-1.37□□□□□ -2.63
USF3Q68DE3 Y_RNA.231-201ENST00000364358 102 ntBASIC-1.38□□□□□ -2.63
USF3Q68DE3 RNA5SP86-201ENST00000390869 98 ntBASIC-1.38□□□□□ -2.63
USF3Q68DE3 SNORA53-201ENST00000391141 249 ntBASIC-1.38□□□□□ -2.63
USF3Q68DE3 AL365203.2-201ENST00000423444 196 ntBASIC-1.38□□□□□ -2.63
USF3Q68DE3 RNU6-155P-201ENST00000516347 100 ntBASIC-1.38□□□□□ -2.63
USF3Q68DE3 RNU6-365P-201ENST00000517113 106 ntBASIC-1.38□□□□□ -2.63
USF3Q68DE3 RNU6-89P-201ENST00000606519 100 ntBASIC-1.38□□□□□ -2.63
USF3Q68DE3 AC091932.4-201ENST00000623386 200 ntBASIC-1.38□□□□□ -2.63
USF3Q68DE3 MIR6841-201ENST00000637129 72 ntBASIC-1.38□□□□□ -2.63
USF3Q68DE3 Y_RNA.5-201ENST00000362334 102 ntBASIC-1.38□□□□□ -2.63
USF3Q68DE3 Y_RNA.190-201ENST00000363964 101 ntBASIC-1.38□□□□□ -2.63
USF3Q68DE3 RNU6-704P-201ENST00000364162 103 ntBASIC-1.38□□□□□ -2.63
USF3Q68DE3 MIR190B-201ENST00000401119 79 ntBASIC-1.38□□□□□ -2.63
USF3Q68DE3 AL590004.1-201ENST00000405321 300 ntBASIC-1.38□□□□□ -2.63
USF3Q68DE3 MIR548E-201ENST00000408287 88 ntBASIC-1.38□□□□□ -2.63
USF3Q68DE3 BX295541.1-201ENST00000417774 250 ntBASIC-1.38□□□□□ -2.63
USF3Q68DE3 FAM13A-AS1_1.1-201ENST00000612555 119 ntBASIC-1.38□□□□□ -2.63
USF3Q68DE3 MIR6773-201ENST00000612812 74 ntBASIC-1.38□□□□□ -2.63
USF3Q68DE3 AC011476.5-201ENST00000615594 130 ntBASIC-1.38□□□□□ -2.63
USF3Q68DE3 RNU6-38P-201ENST00000384085 107 ntBASIC-1.39□□□□□ -2.63
USF3Q68DE3 Y_RNA.440-201ENST00000384120 114 ntBASIC-1.39□□□□□ -2.63
USF3Q68DE3 RNU6-842P-201ENST00000384269 107 ntBASIC-1.39□□□□□ -2.63
USF3Q68DE3 Y_RNA.470-201ENST00000384307 117 ntBASIC-1.39□□□□□ -2.63
USF3Q68DE3 Y_RNA.486-201ENST00000384398 107 ntBASIC-1.39□□□□□ -2.63
USF3Q68DE3 Y_RNA.515-201ENST00000384535 112 ntBASIC-1.39□□□□□ -2.63
USF3Q68DE3 RNU6-95P-201ENST00000384697 107 ntBASIC-1.39□□□□□ -2.63
USF3Q68DE3 MIR507-201ENST00000385234 94 ntBASIC-1.39□□□□□ -2.63
USF3Q68DE3 SNORA26.4-201ENST00000391188 123 ntBASIC-1.39□□□□□ -2.63
USF3Q68DE3 AL078595.1-201ENST00000404458 226 ntBASIC-1.39□□□□□ -2.63
USF3Q68DE3 RNU6-592P-201ENST00000411333 103 ntBASIC-1.39□□□□□ -2.63
USF3Q68DE3 MTND3P16-201ENST00000452205 344 ntBASIC-1.39□□□□□ -2.63
USF3Q68DE3 RNU7-195P-201ENST00000458793 62 ntBASIC-1.39□□□□□ -2.63
USF3Q68DE3 RNU6-1258P-201ENST00000516911 111 ntBASIC-1.39□□□□□ -2.63
USF3Q68DE3 AP003461.1-201ENST00000528866 78 ntBASIC-1.39□□□□□ -2.63
USF3Q68DE3 VTRNA2-1-201ENST00000602301 127 ntBASIC-1.39□□□□□ -2.63
USF3Q68DE3 AL049861.1-201ENST00000603130 150 ntBASIC-1.39□□□□□ -2.63
USF3Q68DE3 AC024933.1-201ENST00000608472 348 ntBASIC-1.39□□□□□ -2.63
USF3Q68DE3 Y_RNA.66-201ENST00000362862 102 ntBASIC-1.39□□□□□ -2.63
USF3Q68DE3 Y_RNA.454-201ENST00000384224 113 ntBASIC-1.39□□□□□ -2.63
USF3Q68DE3 RNU7-113P-201ENST00000459273 62 ntBASIC-1.39□□□□□ -2.63
USF3Q68DE3 RNU6ATAC32P-201ENST00000516026 76 ntBASIC-1.39□□□□□ -2.63
USF3Q68DE3 RNU6-874P-201ENST00000362390 105 ntBASIC-1.4□□□□□ -2.63
USF3Q68DE3 Y_RNA.145-201ENST00000363527 102 ntBASIC-1.4□□□□□ -2.63
USF3Q68DE3 RNY1P11-201ENST00000363759 113 ntBASIC-1.4□□□□□ -2.63
USF3Q68DE3 Y_RNA.175-201ENST00000363794 111 ntBASIC-1.4□□□□□ -2.63
USF3Q68DE3 RNU6-282P-201ENST00000365357 103 ntBASIC-1.4□□□□□ -2.63
USF3Q68DE3 Y_RNA.353-201ENST00000365440 108 ntBASIC-1.4□□□□□ -2.63
USF3Q68DE3 AC018880.2-201ENST00000414265 201 ntBASIC-1.4□□□□□ -2.63
USF3Q68DE3 AC097510.1-201ENST00000510945 133 ntBASIC-1.4□□□□□ -2.63
USF3Q68DE3 RNA5SP401-201ENST00000515920 127 ntBASIC-1.4□□□□□ -2.63
USF3Q68DE3 Y_RNA.678-201ENST00000516408 96 ntBASIC-1.4□□□□□ -2.63
USF3Q68DE3 RNU7-137P-201ENST00000516788 62 ntBASIC-1.4□□□□□ -2.63
USF3Q68DE3 RNU6-1006P-201ENST00000516998 103 ntBASIC-1.4□□□□□ -2.63
USF3Q68DE3 RNU6-1301P-201ENST00000362724 104 ntBASIC-1.4□□□□□ -2.63
USF3Q68DE3 Y_RNA.135-201ENST00000363439 95 ntBASIC-1.4□□□□□ -2.63
USF3Q68DE3 Y_RNA.389-201ENST00000383924 113 ntBASIC-1.4□□□□□ -2.63
USF3Q68DE3 RNY3P4-201ENST00000384428 101 ntBASIC-1.4□□□□□ -2.63
USF3Q68DE3 MTCO2P19-201ENST00000427513 598 ntBASIC-1.4□□□□□ -2.63
USF3Q68DE3 CR2-207ENST00000640301 151 ntTSL 1 (best) BASIC-1.4□□□□□ -2.63
Retrieved 100 of 98,524 protein–RNA pairs in 105 ms