Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 DENND4A-209ENST00000635620 5887 ntTSL 5 BASIC1.52□□□□□ -2.17
CCDC144BQ3MJ40 RNU6-915P-201ENST00000364943 103 ntBASIC1.51□□□□□ -2.17
CCDC144BQ3MJ40 SNORD114-22-201ENST00000365423 72 ntBASIC1.51□□□□□ -2.17
CCDC144BQ3MJ40 FABP5P4-201ENST00000437203 171 ntBASIC1.51□□□□□ -2.17
CCDC144BQ3MJ40 snoU13.18-201ENST00000459483 104 ntBASIC1.51□□□□□ -2.17
CCDC144BQ3MJ40 AC004223.1-201ENST00000479840 271 ntBASIC1.51□□□□□ -2.17
CCDC144BQ3MJ40 AC023827.1-201ENST00000569247 97 ntBASIC1.51□□□□□ -2.17
CCDC144BQ3MJ40 RNY1P11-201ENST00000363759 113 ntBASIC1.5□□□□□ -2.17
CCDC144BQ3MJ40 MIR758-201ENST00000390227 88 ntBASIC1.5□□□□□ -2.17
CCDC144BQ3MJ40 RNU6-205P-201ENST00000390858 107 ntBASIC1.5□□□□□ -2.17
CCDC144BQ3MJ40 RNU6-460P-201ENST00000391158 108 ntBASIC1.5□□□□□ -2.17
CCDC144BQ3MJ40 AL022718.1-201ENST00000412004 84 ntBASIC1.5□□□□□ -2.17
CCDC144BQ3MJ40 AC067940.1-201ENST00000458411 300 ntBASIC1.5□□□□□ -2.17
CCDC144BQ3MJ40 RNU7-62P-201ENST00000458856 62 ntBASIC1.5□□□□□ -2.17
CCDC144BQ3MJ40 Y_RNA.686-201ENST00000516548 134 ntBASIC1.5□□□□□ -2.17
CCDC144BQ3MJ40 AC133485.4-201ENST00000561835 220 ntBASIC1.5□□□□□ -2.17
CCDC144BQ3MJ40 AC138907.4-201ENST00000570107 226 ntBASIC1.5□□□□□ -2.17
CCDC144BQ3MJ40 MIR3660-201ENST00000584845 100 ntBASIC1.5□□□□□ -2.17
CCDC144BQ3MJ40 AC012676.2-201ENST00000619258 186 ntBASIC1.5□□□□□ -2.17
CCDC144BQ3MJ40 RNU4-16P-201ENST00000364737 141 ntBASIC1.49□□□□□ -2.17
CCDC144BQ3MJ40 SNORD114-24-201ENST00000365029 72 ntBASIC1.49□□□□□ -2.17
CCDC144BQ3MJ40 Y_RNA.420-201ENST00000384043 110 ntBASIC1.49□□□□□ -2.17
CCDC144BQ3MJ40 snoU13.2-201ENST00000459201 104 ntBASIC1.49□□□□□ -2.17
CCDC144BQ3MJ40 CEP290-201ENST00000309041 7616 ntAPPRIS ALT1 TSL 5 BASIC1.48□□□□□ -2.17
CCDC144BQ3MJ40 MIR96-201ENST00000362288 78 ntBASIC1.48□□□□□ -2.17
CCDC144BQ3MJ40 RNU6-309P-201ENST00000364573 106 ntBASIC1.48□□□□□ -2.17
CCDC144BQ3MJ40 MIR588-201ENST00000384900 83 ntBASIC1.48□□□□□ -2.17
CCDC144BQ3MJ40 SNORA40.6-201ENST00000391153 128 ntBASIC1.48□□□□□ -2.17
CCDC144BQ3MJ40 RNU6-994P-201ENST00000410507 111 ntBASIC1.48□□□□□ -2.17
CCDC144BQ3MJ40 RNU4ATAC11P-201ENST00000515939 126 ntBASIC1.48□□□□□ -2.17
CCDC144BQ3MJ40 HSPE1P19-201ENST00000603327 295 ntBASIC1.48□□□□□ -2.17
CCDC144BQ3MJ40 Y_RNA.506-201ENST00000384494 102 ntBASIC1.47□□□□□ -2.17
CCDC144BQ3MJ40 RNA5SP95-201ENST00000410319 137 ntBASIC1.47□□□□□ -2.17
CCDC144BQ3MJ40 RNA5SP144-201ENST00000410846 116 ntBASIC1.47□□□□□ -2.17
CCDC144BQ3MJ40 MIR4305-201ENST00000583252 102 ntBASIC1.47□□□□□ -2.17
CCDC144BQ3MJ40 U7.2-201ENST00000607576 63 ntBASIC1.47□□□□□ -2.17
CCDC144BQ3MJ40 TUG1_4.1-201ENST00000619464 181 ntBASIC1.47□□□□□ -2.17
CCDC144BQ3MJ40 AC108866.1-201ENST00000503073 2339 ntTSL 5 BASIC1.46□□□□□ -2.18
CCDC144BQ3MJ40 POLR2J4-204ENST00000418424 324 ntBASIC1.46□□□□□ -2.18
CCDC144BQ3MJ40 MIR18B-201ENST00000454574 71 ntBASIC1.46□□□□□ -2.18
CCDC144BQ3MJ40 Y_RNA.651-201ENST00000459380 103 ntBASIC1.46□□□□□ -2.18
CCDC144BQ3MJ40 RNU6-240P-201ENST00000516098 97 ntBASIC1.46□□□□□ -2.18
CCDC144BQ3MJ40 MIR3121-201ENST00000579680 77 ntBASIC1.46□□□□□ -2.18
CCDC144BQ3MJ40 AL136317.1-201ENST00000612653 226 ntBASIC1.46□□□□□ -2.18
CCDC144BQ3MJ40 AC010332.2-201ENST00000613083 1904 ntBASIC1.45□□□□□ -2.18
CCDC144BQ3MJ40 SNORD12C-201ENST00000386307 89 ntBASIC1.45□□□□□ -2.18
CCDC144BQ3MJ40 RNA5SP237-201ENST00000410414 113 ntBASIC1.45□□□□□ -2.18
CCDC144BQ3MJ40 RNU5E-3P-201ENST00000515913 68 ntBASIC1.45□□□□□ -2.18
CCDC144BQ3MJ40 Y_RNA.703-201ENST00000516846 111 ntBASIC1.45□□□□□ -2.18
CCDC144BQ3MJ40 AC021443.1-201ENST00000604478 211 ntBASIC1.45□□□□□ -2.18
CCDC144BQ3MJ40 KIAA1551-201ENST00000312561 6230 ntAPPRIS P1 TSL 1 (best) BASIC1.44□□□□□ -2.18
CCDC144BQ3MJ40 RNU6-746P-201ENST00000384112 109 ntBASIC1.44□□□□□ -2.18
CCDC144BQ3MJ40 RNU6-1165P-201ENST00000410119 107 ntBASIC1.44□□□□□ -2.18
CCDC144BQ3MJ40 RNU7-113P-201ENST00000459273 62 ntBASIC1.44□□□□□ -2.18
CCDC144BQ3MJ40 RNU6-426P-201ENST00000516464 97 ntBASIC1.44□□□□□ -2.18
CCDC144BQ3MJ40 HOTAIRM1_4.1-201ENST00000617934 102 ntBASIC1.44□□□□□ -2.18
CCDC144BQ3MJ40 SENP7-207ENST00000394095 4945 ntAPPRIS P3 TSL 1 (best) BASIC1.43□□□□□ -2.18
CCDC144BQ3MJ40 RNU6-647P-201ENST00000364243 107 ntBASIC1.43□□□□□ -2.18
CCDC144BQ3MJ40 Y_RNA.568-201ENST00000384742 113 ntBASIC1.43□□□□□ -2.18
CCDC144BQ3MJ40 SNORA40-201ENST00000388090 126 ntBASIC1.43□□□□□ -2.18
CCDC144BQ3MJ40 MIR942-201ENST00000401111 86 ntBASIC1.43□□□□□ -2.18
CCDC144BQ3MJ40 RNU6ATAC33P-201ENST00000408647 126 ntBASIC1.43□□□□□ -2.18
CCDC144BQ3MJ40 EYS-205ENST00000393380 5450 ntTSL 1 (best) BASIC1.43□□□□□ -2.18
CCDC144BQ3MJ40 RNU6-934P-201ENST00000365154 107 ntBASIC1.42□□□□□ -2.18
CCDC144BQ3MJ40 MIR563-201ENST00000385080 79 ntBASIC1.42□□□□□ -2.18
CCDC144BQ3MJ40 MT-TF-201ENST00000387314 71 ntBASIC1.42□□□□□ -2.18
CCDC144BQ3MJ40 RNU7-164P-201ENST00000459221 62 ntBASIC1.42□□□□□ -2.18
CCDC144BQ3MJ40 AC113410.1-201ENST00000505029 247 ntBASIC1.42□□□□□ -2.18
CCDC144BQ3MJ40 MIR6740-201ENST00000618268 113 ntBASIC1.42□□□□□ -2.18
CCDC144BQ3MJ40 SNORD115-2-201ENST00000362842 82 ntBASIC1.41□□□□□ -2.18
CCDC144BQ3MJ40 SNORD115-20-201ENST00000365099 82 ntBASIC1.41□□□□□ -2.18
CCDC144BQ3MJ40 U7.7-201ENST00000459276 60 ntBASIC1.41□□□□□ -2.18
CCDC144BQ3MJ40 IGHVII-40-1-201ENST00000517316 58 ntBASIC1.41□□□□□ -2.18
CCDC144BQ3MJ40 AL078603.1-201ENST00000603824 313 ntBASIC1.41□□□□□ -2.18
CCDC144BQ3MJ40 RNU6-94P-201ENST00000607728 107 ntBASIC1.41□□□□□ -2.18
CCDC144BQ3MJ40 AL137067.1-201ENST00000615933 120 ntBASIC1.41□□□□□ -2.18
CCDC144BQ3MJ40 MIR1-1-201ENST00000362147 71 ntBASIC1.4□□□□□ -2.19
CCDC144BQ3MJ40 RNU1-93P-201ENST00000364704 169 ntBASIC1.4□□□□□ -2.19
CCDC144BQ3MJ40 SNORD50.2-201ENST00000365465 70 ntBASIC1.4□□□□□ -2.19
CCDC144BQ3MJ40 RNU6-42P-201ENST00000384165 107 ntBASIC1.4□□□□□ -2.19
CCDC144BQ3MJ40 RPS29P28-201ENST00000446439 141 ntBASIC1.4□□□□□ -2.19
CCDC144BQ3MJ40 SNORD124-201ENST00000459577 104 ntBASIC1.4□□□□□ -2.19
CCDC144BQ3MJ40 RNU6-346P-201ENST00000516288 111 ntBASIC1.4□□□□□ -2.19
CCDC144BQ3MJ40 MIR4661-201ENST00000582720 75 ntBASIC1.4□□□□□ -2.19
CCDC144BQ3MJ40 RMST_2.1-201ENST00000617263 136 ntBASIC1.4□□□□□ -2.19
CCDC144BQ3MJ40 ANGPTL3-201ENST00000371129 2805 ntAPPRIS P1 TSL 1 (best) BASIC1.39□□□□□ -2.19
CCDC144BQ3MJ40 AL391516.1-201ENST00000554380 2449 ntBASIC1.39□□□□□ -2.19
CCDC144BQ3MJ40 SNORD114-27-201ENST00000363766 70 ntBASIC1.39□□□□□ -2.19
CCDC144BQ3MJ40 Y_RNA.531-201ENST00000384589 121 ntBASIC1.39□□□□□ -2.19
CCDC144BQ3MJ40 RNU6ATAC6P-201ENST00000408132 126 ntBASIC1.39□□□□□ -2.19
CCDC144BQ3MJ40 RNA5SP220-201ENST00000516298 104 ntBASIC1.39□□□□□ -2.19
CCDC144BQ3MJ40 RNU6-1110P-201ENST00000516462 101 ntBASIC1.39□□□□□ -2.19
CCDC144BQ3MJ40 RNU6-508P-201ENST00000363231 103 ntBASIC1.38□□□□□ -2.19
CCDC144BQ3MJ40 Y_RNA.114-201ENST00000363265 113 ntBASIC1.38□□□□□ -2.19
CCDC144BQ3MJ40 Y_RNA.171-201ENST00000363760 102 ntBASIC1.38□□□□□ -2.19
CCDC144BQ3MJ40 Y_RNA.299-201ENST00000364973 94 ntBASIC1.38□□□□□ -2.19
CCDC144BQ3MJ40 RPL39P25-201ENST00000449384 154 ntBASIC1.38□□□□□ -2.19
CCDC144BQ3MJ40 AC004812.1-201ENST00000540773 146 ntBASIC1.38□□□□□ -2.19
CCDC144BQ3MJ40 AC025627.3-201ENST00000582078 182 ntBASIC1.38□□□□□ -2.19
CCDC144BQ3MJ40 AL662814.1-201ENST00000617364 121 ntBASIC1.38□□□□□ -2.19
Retrieved 100 of 98,524 protein–RNA pairs in 99.6 ms