Protein–RNA interactions for Protein: P50479

PDLIM4, PDZ and LIM domain protein 4, humanhuman

Predictions only

Length 330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM4P50479 Y_RNA.649-201ENST00000459077 103 ntBASIC1.28□□□□□ -2.2
PDLIM4P50479 RPL30P7-201ENST00000479312 323 ntBASIC1.28□□□□□ -2.2
PDLIM4P50479 RNU7-41P-201ENST00000515917 61 ntBASIC1.28□□□□□ -2.2
PDLIM4P50479 SNORD111.1-201ENST00000516421 86 ntBASIC1.28□□□□□ -2.2
PDLIM4P50479 MIR3937-201ENST00000580135 106 ntBASIC1.28□□□□□ -2.2
PDLIM4P50479 MIR4422-201ENST00000581938 83 ntBASIC1.28□□□□□ -2.2
PDLIM4P50479 MIR3192-201ENST00000584920 77 ntBASIC1.28□□□□□ -2.2
PDLIM4P50479 AL096861.1-201ENST00000610899 123 ntBASIC1.28□□□□□ -2.2
PDLIM4P50479 SNORA22.1-201ENST00000362701 134 ntBASIC1.27□□□□□ -2.21
PDLIM4P50479 RNY4P6-201ENST00000363667 96 ntBASIC1.27□□□□□ -2.21
PDLIM4P50479 SNORA7.1-201ENST00000363750 139 ntBASIC1.27□□□□□ -2.21
PDLIM4P50479 Y_RNA.213-201ENST00000364178 111 ntBASIC1.27□□□□□ -2.21
PDLIM4P50479 Y_RNA.299-201ENST00000364973 94 ntBASIC1.27□□□□□ -2.21
PDLIM4P50479 Y_RNA.354-201ENST00000365448 111 ntBASIC1.27□□□□□ -2.21
PDLIM4P50479 RPS3AP1-201ENST00000413190 320 ntBASIC1.27□□□□□ -2.21
PDLIM4P50479 AC023790.1-201ENST00000482174 347 ntBASIC1.27□□□□□ -2.21
PDLIM4P50479 RPS23P4-201ENST00000487908 423 ntBASIC1.27□□□□□ -2.21
PDLIM4P50479 AL133373.1-201ENST00000497098 94 ntBASIC1.27□□□□□ -2.21
PDLIM4P50479 AC019176.1-201ENST00000518519 225 ntBASIC1.27□□□□□ -2.21
PDLIM4P50479 AC004812.1-201ENST00000540773 146 ntBASIC1.27□□□□□ -2.21
PDLIM4P50479 MIR7974-201ENST00000615835 79 ntBASIC1.27□□□□□ -2.21
PDLIM4P50479 UGP2-230ENST00000626380 276 ntTSL 5 BASIC1.27□□□□□ -2.21
PDLIM4P50479 Y_RNA.281-201ENST00000364774 94 ntBASIC1.26□□□□□ -2.21
PDLIM4P50479 Y_RNA.327-201ENST00000365201 102 ntBASIC1.26□□□□□ -2.21
PDLIM4P50479 RNU6ATAC2P-201ENST00000387943 126 ntBASIC1.26□□□□□ -2.21
PDLIM4P50479 MIR759-201ENST00000390224 91 ntBASIC1.26□□□□□ -2.21
PDLIM4P50479 MIR1323-201ENST00000408090 73 ntBASIC1.26□□□□□ -2.21
PDLIM4P50479 MIR1304-201ENST00000408243 91 ntBASIC1.26□□□□□ -2.21
PDLIM4P50479 NMTRQ-TTG12-1-201ENST00000467595 72 ntBASIC1.26□□□□□ -2.21
PDLIM4P50479 AC113410.1-201ENST00000505029 247 ntBASIC1.26□□□□□ -2.21
PDLIM4P50479 RNU11-2P-201ENST00000516898 142 ntBASIC1.26□□□□□ -2.21
PDLIM4P50479 Y_RNA.709-201ENST00000516952 92 ntBASIC1.26□□□□□ -2.21
PDLIM4P50479 MIR3664-201ENST00000579074 99 ntBASIC1.26□□□□□ -2.21
PDLIM4P50479 MIR548AO-201ENST00000579992 96 ntBASIC1.26□□□□□ -2.21
PDLIM4P50479 AL157834.3-201ENST00000615543 103 ntBASIC1.26□□□□□ -2.21
PDLIM4P50479 SPTSSB-205ENST00000620149 231 ntAPPRIS P1 BASIC1.26□□□□□ -2.21
PDLIM4P50479 AL121890.5-201ENST00000620848 304 ntBASIC1.26□□□□□ -2.21
PDLIM4P50479 LMBR1-222ENST00000638959 93 ntTSL 5 BASIC1.26□□□□□ -2.21
PDLIM4P50479 ZNF260-205ENST00000593142 4047 ntAPPRIS P1 TSL 1 (best) BASIC1.25□□□□□ -2.21
PDLIM4P50479 Y_RNA.81-201ENST00000362997 102 ntBASIC1.25□□□□□ -2.21
PDLIM4P50479 Y_RNA.226-201ENST00000364337 114 ntBASIC1.25□□□□□ -2.21
PDLIM4P50479 RNU6-755P-201ENST00000364400 103 ntBASIC1.25□□□□□ -2.21
PDLIM4P50479 SNORA1.1-201ENST00000364671 133 ntBASIC1.25□□□□□ -2.21
PDLIM4P50479 RNU4-16P-201ENST00000364737 141 ntBASIC1.25□□□□□ -2.21
PDLIM4P50479 SNORD116-21-201ENST00000384507 92 ntBASIC1.25□□□□□ -2.21
PDLIM4P50479 RNU6-880P-201ENST00000384526 107 ntBASIC1.25□□□□□ -2.21
PDLIM4P50479 RNU6-1104P-201ENST00000384723 104 ntBASIC1.25□□□□□ -2.21
PDLIM4P50479 MIR150-201ENST00000385048 84 ntBASIC1.25□□□□□ -2.21
PDLIM4P50479 MIR320A-201ENST00000385302 82 ntBASIC1.25□□□□□ -2.21
PDLIM4P50479 MT-TI-201ENST00000387365 69 ntBASIC1.25□□□□□ -2.21
PDLIM4P50479 MIR1302-7-201ENST00000408841 72 ntBASIC1.25□□□□□ -2.21
PDLIM4P50479 RNU6-1190P-201ENST00000410811 104 ntBASIC1.25□□□□□ -2.21
PDLIM4P50479 RNU6-1054P-201ENST00000411293 104 ntBASIC1.25□□□□□ -2.21
PDLIM4P50479 AC063976.4-201ENST00000421971 163 ntBASIC1.25□□□□□ -2.21
PDLIM4P50479 AL512326.2-201ENST00000426359 151 ntBASIC1.25□□□□□ -2.21
PDLIM4P50479 AL354695.1-201ENST00000427935 228 ntBASIC1.25□□□□□ -2.21
PDLIM4P50479 RPL39P39-201ENST00000455840 151 ntBASIC1.25□□□□□ -2.21
PDLIM4P50479 RNU7-45P-201ENST00000459460 63 ntBASIC1.25□□□□□ -2.21
PDLIM4P50479 RNA5SP445-201ENST00000515889 115 ntBASIC1.25□□□□□ -2.21
PDLIM4P50479 RNU6-1258P-201ENST00000516911 111 ntBASIC1.25□□□□□ -2.21
PDLIM4P50479 MIR4421-201ENST00000578133 69 ntBASIC1.25□□□□□ -2.21
PDLIM4P50479 MIR3163-201ENST00000581592 73 ntBASIC1.25□□□□□ -2.21
PDLIM4P50479 MIR8065-201ENST00000620577 100 ntBASIC1.25□□□□□ -2.21
PDLIM4P50479 RNY4P18-201ENST00000391107 89 ntBASIC1.24□□□□□ -2.21
PDLIM4P50479 MIR1287-201ENST00000408492 90 ntBASIC1.24□□□□□ -2.21
PDLIM4P50479 RNU6-602P-201ENST00000411155 105 ntBASIC1.24□□□□□ -2.21
PDLIM4P50479 AL035461.1-201ENST00000421490 332 ntBASIC1.24□□□□□ -2.21
PDLIM4P50479 snoU13.25-201ENST00000458945 104 ntBASIC1.24□□□□□ -2.21
PDLIM4P50479 RNU6-902P-201ENST00000517212 91 ntBASIC1.24□□□□□ -2.21
PDLIM4P50479 AC007012.1-201ENST00000567192 175 ntBASIC1.24□□□□□ -2.21
PDLIM4P50479 MTND5P34-201ENST00000568888 325 ntBASIC1.24□□□□□ -2.21
PDLIM4P50479 MIR6129-201ENST00000616087 109 ntBASIC1.24□□□□□ -2.21
PDLIM4P50479 KTN1-205ENST00000395314 4618 ntAPPRIS P4 TSL 1 (best) BASIC1.24□□□□□ -2.21
PDLIM4P50479 SNORD115-19-201ENST00000363098 82 ntBASIC1.23□□□□□ -2.21
PDLIM4P50479 SNORD115-18-201ENST00000363293 82 ntBASIC1.23□□□□□ -2.21
PDLIM4P50479 SNORD115-17-201ENST00000364612 82 ntBASIC1.23□□□□□ -2.21
PDLIM4P50479 SNORA25.9-201ENST00000365087 128 ntBASIC1.23□□□□□ -2.21
PDLIM4P50479 MT-TN-201ENST00000387400 73 ntBASIC1.23□□□□□ -2.21
PDLIM4P50479 RNU7-113P-201ENST00000459273 62 ntBASIC1.23□□□□□ -2.21
PDLIM4P50479 RNU6-947P-201ENST00000516264 106 ntBASIC1.23□□□□□ -2.21
PDLIM4P50479 RNU6-412P-201ENST00000516434 106 ntBASIC1.23□□□□□ -2.21
PDLIM4P50479 RNU6-165P-201ENST00000517170 99 ntBASIC1.23□□□□□ -2.21
PDLIM4P50479 AL512310.8-201ENST00000550183 120 ntBASIC1.23□□□□□ -2.21
PDLIM4P50479 PRELID3BP2-201ENST00000605362 201 ntBASIC1.23□□□□□ -2.21
PDLIM4P50479 GNPDA2-204ENST00000509756 5382 ntAPPRIS ALT1 TSL 1 (best) BASIC1.23□□□□□ -2.21
PDLIM4P50479 Y_RNA.35-201ENST00000362601 101 ntBASIC1.22□□□□□ -2.21
PDLIM4P50479 Y_RNA.171-201ENST00000363760 102 ntBASIC1.22□□□□□ -2.21
PDLIM4P50479 SNORD38B-201ENST00000384690 67 ntBASIC1.22□□□□□ -2.21
PDLIM4P50479 MIR548D2-201ENST00000384955 97 ntBASIC1.22□□□□□ -2.21
PDLIM4P50479 RNU4-69P-201ENST00000410677 143 ntBASIC1.22□□□□□ -2.21
PDLIM4P50479 HMGN1P33-201ENST00000432945 451 ntBASIC1.22□□□□□ -2.21
PDLIM4P50479 RPL39P34-201ENST00000477141 156 ntBASIC1.22□□□□□ -2.21
PDLIM4P50479 AC022523.2-201ENST00000561045 150 ntBASIC1.22□□□□□ -2.21
PDLIM4P50479 CYP3A52P-201ENST00000563326 91 ntBASIC1.22□□□□□ -2.21
PDLIM4P50479 MIR8070-201ENST00000616510 88 ntBASIC1.22□□□□□ -2.21
PDLIM4P50479 SNORD38B-202ENST00000625943 69 ntBASIC1.22□□□□□ -2.21
PDLIM4P50479 MIR548A1-201ENST00000385041 97 ntBASIC1.21□□□□□ -2.22
PDLIM4P50479 TRAJ47-201ENST00000390490 57 ntAPPRIS P1 BASIC1.21□□□□□ -2.22
PDLIM4P50479 MTATP6P29-201ENST00000415057 132 ntBASIC1.21□□□□□ -2.22
PDLIM4P50479 RPS27P16-201ENST00000425758 201 ntBASIC1.21□□□□□ -2.22
Retrieved 100 of 98,524 protein–RNA pairs in 109.7 ms