Protein–RNA interactions for Protein: A6NHR9

SMCHD1, Structural maintenance of chromosomes flexible hinge domain-containing protein 1, humanhuman

Predictions only

Length 2,005 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1A6NHR9 RNU6-970P-201ENST00000516312 107 ntBASIC1.05□□□□□ -2.24
SMCHD1A6NHR9 Y_RNA.703-201ENST00000516846 111 ntBASIC1.05□□□□□ -2.24
SMCHD1A6NHR9 RNA5SP404-201ENST00000517118 132 ntBASIC1.05□□□□□ -2.24
SMCHD1A6NHR9 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC1.04□□□□□ -2.24
SMCHD1A6NHR9 SNORA20-201ENST00000384662 132 ntBASIC1.04□□□□□ -2.24
SMCHD1A6NHR9 SNORA75.2-201ENST00000391138 150 ntBASIC1.04□□□□□ -2.24
SMCHD1A6NHR9 SNORA75.3-201ENST00000391231 150 ntBASIC1.04□□□□□ -2.24
SMCHD1A6NHR9 U7.2-201ENST00000607576 63 ntBASIC1.04□□□□□ -2.24
SMCHD1A6NHR9 AL137067.1-201ENST00000615933 120 ntBASIC1.04□□□□□ -2.24
SMCHD1A6NHR9 MTND1P7-201ENST00000632801 297 ntBASIC1.04□□□□□ -2.24
SMCHD1A6NHR9 Z97988.1-201ENST00000637697 135 ntBASIC1.04□□□□□ -2.24
SMCHD1A6NHR9 CXADR-202ENST00000356275 270 ntTSL 1 (best) BASIC1.03□□□□□ -2.24
SMCHD1A6NHR9 AC244023.1-201ENST00000426884 112 ntBASIC1.03□□□□□ -2.24
SMCHD1A6NHR9 AF228730.3-201ENST00000436691 102 ntBASIC1.03□□□□□ -2.24
SMCHD1A6NHR9 RPL39P25-201ENST00000449384 154 ntBASIC1.03□□□□□ -2.24
SMCHD1A6NHR9 AC242498.1-201ENST00000604134 111 ntBASIC1.03□□□□□ -2.24
SMCHD1A6NHR9 FAM71BP1-201ENST00000604431 523 ntBASIC1.03□□□□□ -2.24
SMCHD1A6NHR9 MIR377-201ENST00000362145 69 ntBASIC1.03□□□□□ -2.25
SMCHD1A6NHR9 Y_RNA.49-201ENST00000362714 112 ntBASIC1.03□□□□□ -2.25
SMCHD1A6NHR9 Y_RNA.218-201ENST00000364218 104 ntBASIC1.03□□□□□ -2.25
SMCHD1A6NHR9 Y_RNA.420-201ENST00000384043 110 ntBASIC1.03□□□□□ -2.25
SMCHD1A6NHR9 SNORD79.1-201ENST00000516069 84 ntBASIC1.03□□□□□ -2.25
SMCHD1A6NHR9 SCARNA15-202ENST00000516881 127 ntBASIC1.03□□□□□ -2.25
SMCHD1A6NHR9 AL020996.3-201ENST00000606617 222 ntBASIC1.03□□□□□ -2.25
SMCHD1A6NHR9 RNA5SP264-201ENST00000363115 107 ntBASIC1.02□□□□□ -2.25
SMCHD1A6NHR9 Y_RNA.366-201ENST00000365540 102 ntBASIC1.02□□□□□ -2.25
SMCHD1A6NHR9 RNU6-746P-201ENST00000384112 109 ntBASIC1.02□□□□□ -2.25
SMCHD1A6NHR9 SNORD89-201ENST00000390981 114 ntBASIC1.02□□□□□ -2.25
SMCHD1A6NHR9 POLR2J4-204ENST00000418424 324 ntBASIC1.02□□□□□ -2.25
SMCHD1A6NHR9 RNU6-1211P-201ENST00000459179 105 ntBASIC1.02□□□□□ -2.25
SMCHD1A6NHR9 AL022345.2-201ENST00000606307 135 ntBASIC1.02□□□□□ -2.25
SMCHD1A6NHR9 LRRIQ1-202ENST00000393217 5394 ntAPPRIS P1 TSL 1 (best) BASIC1.02□□□□□ -2.25
SMCHD1A6NHR9 MIR103A2-201ENST00000362154 78 ntBASIC1.01□□□□□ -2.25
SMCHD1A6NHR9 Y_RNA.168-201ENST00000363740 102 ntBASIC1.01□□□□□ -2.25
SMCHD1A6NHR9 RNY1P5-201ENST00000383890 115 ntBASIC1.01□□□□□ -2.25
SMCHD1A6NHR9 RNY1P4-201ENST00000384595 115 ntBASIC1.01□□□□□ -2.25
SMCHD1A6NHR9 RNU6-1321P-201ENST00000390905 107 ntBASIC1.01□□□□□ -2.25
SMCHD1A6NHR9 RNA5SP261-201ENST00000410536 106 ntBASIC1.01□□□□□ -2.25
SMCHD1A6NHR9 RNU6-735P-201ENST00000410612 107 ntBASIC1.01□□□□□ -2.25
SMCHD1A6NHR9 RNU7-113P-201ENST00000459273 62 ntBASIC1.01□□□□□ -2.25
SMCHD1A6NHR9 PRELID3BP2-201ENST00000605362 201 ntBASIC1.01□□□□□ -2.25
SMCHD1A6NHR9 ABCA5-201ENST00000392676 8220 ntAPPRIS P1 TSL 1 (best) BASIC1.01□□□□□ -2.25
SMCHD1A6NHR9 AC010332.2-201ENST00000613083 1904 ntBASIC1.01□□□□□ -2.25
SMCHD1A6NHR9 Y_RNA.294-201ENST00000364916 102 ntBASIC1.01□□□□□ -2.25
SMCHD1A6NHR9 Y_RNA.497-201ENST00000384447 98 ntBASIC1.01□□□□□ -2.25
SMCHD1A6NHR9 SNORD41-201ENST00000386967 70 ntBASIC1.01□□□□□ -2.25
SMCHD1A6NHR9 RNU7-123P-201ENST00000515911 60 ntBASIC1.01□□□□□ -2.25
SMCHD1A6NHR9 Y_RNA.686-201ENST00000516548 134 ntBASIC1.01□□□□□ -2.25
SMCHD1A6NHR9 MIR4305-201ENST00000583252 102 ntBASIC1.01□□□□□ -2.25
SMCHD1A6NHR9 CLRN1-AS1.1-201ENST00000615643 79 ntBASIC1.01□□□□□ -2.25
SMCHD1A6NHR9 RNU6-704P-201ENST00000364162 103 ntBASIC1□□□□□ -2.25
SMCHD1A6NHR9 RNU4-11P-201ENST00000365287 132 ntBASIC1□□□□□ -2.25
SMCHD1A6NHR9 Y_RNA.531-201ENST00000384589 121 ntBASIC1□□□□□ -2.25
SMCHD1A6NHR9 AC006461.1-201ENST00000412637 326 ntBASIC1□□□□□ -2.25
SMCHD1A6NHR9 AC004941.2-201ENST00000427009 228 ntBASIC1□□□□□ -2.25
SMCHD1A6NHR9 RNU6-255P-201ENST00000516957 105 ntBASIC1□□□□□ -2.25
SMCHD1A6NHR9 AL096861.1-201ENST00000610899 123 ntBASIC1□□□□□ -2.25
SMCHD1A6NHR9 AL391516.1-201ENST00000554380 2449 ntBASIC1□□□□□ -2.25
SMCHD1A6NHR9 AC008163.1-202ENST00000636004 2889 ntBASIC1□□□□□ -2.25
SMCHD1A6NHR9 Y_RNA.363-201ENST00000365529 113 ntBASIC0.99□□□□□ -2.25
SMCHD1A6NHR9 Y_RNA.488-201ENST00000384403 102 ntBASIC0.99□□□□□ -2.25
SMCHD1A6NHR9 MIR200A-201ENST00000384875 90 ntBASIC0.99□□□□□ -2.25
SMCHD1A6NHR9 SNORD99-201ENST00000408612 74 ntBASIC0.99□□□□□ -2.25
SMCHD1A6NHR9 AL022718.1-201ENST00000412004 84 ntBASIC0.99□□□□□ -2.25
SMCHD1A6NHR9 DIP2A-IT1-201ENST00000442434 428 ntTSL 2 BASIC0.99□□□□□ -2.25
SMCHD1A6NHR9 SNORD123-201ENST00000459473 70 ntBASIC0.99□□□□□ -2.25
SMCHD1A6NHR9 MIR548AO-201ENST00000579992 96 ntBASIC0.99□□□□□ -2.25
SMCHD1A6NHR9 RNU6-647P-201ENST00000364243 107 ntBASIC0.99□□□□□ -2.25
SMCHD1A6NHR9 RNU6-580P-201ENST00000365159 107 ntBASIC0.99□□□□□ -2.25
SMCHD1A6NHR9 RNU6-949P-201ENST00000384040 107 ntBASIC0.99□□□□□ -2.25
SMCHD1A6NHR9 MT-TF-201ENST00000387314 71 ntBASIC0.99□□□□□ -2.25
SMCHD1A6NHR9 RNU6-205P-201ENST00000390858 107 ntBASIC0.99□□□□□ -2.25
SMCHD1A6NHR9 MIR936-201ENST00000401264 98 ntBASIC0.99□□□□□ -2.25
SMCHD1A6NHR9 OR2A41P-201ENST00000473586 105 ntBASIC0.99□□□□□ -2.25
SMCHD1A6NHR9 UBL5P1-201ENST00000507979 193 ntBASIC0.99□□□□□ -2.25
SMCHD1A6NHR9 RNU7-35P-201ENST00000517174 62 ntBASIC0.99□□□□□ -2.25
SMCHD1A6NHR9 SNORD24-201ENST00000383884 75 ntBASIC0.98□□□□□ -2.25
SMCHD1A6NHR9 Y_RNA.454-201ENST00000384224 113 ntBASIC0.98□□□□□ -2.25
SMCHD1A6NHR9 TRAJ1-201ENST00000390536 62 ntAPPRIS P1 BASIC0.98□□□□□ -2.25
SMCHD1A6NHR9 MTND4LP9-201ENST00000427694 174 ntBASIC0.98□□□□□ -2.25
SMCHD1A6NHR9 AC107297.1-201ENST00000459991 176 ntBASIC0.98□□□□□ -2.25
SMCHD1A6NHR9 RNY4P20-201ENST00000516678 93 ntBASIC0.98□□□□□ -2.25
SMCHD1A6NHR9 MIR3910-1-201ENST00000580936 111 ntBASIC0.98□□□□□ -2.25
SMCHD1A6NHR9 Y_RNA.85-201ENST00000363014 111 ntBASIC0.98□□□□□ -2.25
SMCHD1A6NHR9 RNU4-16P-201ENST00000364737 141 ntBASIC0.98□□□□□ -2.25
SMCHD1A6NHR9 MIR1270-201ENST00000459320 83 ntBASIC0.98□□□□□ -2.25
SMCHD1A6NHR9 RNA5SP272-201ENST00000516095 111 ntBASIC0.98□□□□□ -2.25
SMCHD1A6NHR9 RNU6-240P-201ENST00000516098 97 ntBASIC0.98□□□□□ -2.25
SMCHD1A6NHR9 MIR548X2-201ENST00000579776 100 ntBASIC0.98□□□□□ -2.25
SMCHD1A6NHR9 AL670379.3-201ENST00000605040 251 ntBASIC0.98□□□□□ -2.25
SMCHD1A6NHR9 ZGRF1-208ENST00000505019 6652 ntAPPRIS P1 TSL 5 BASIC0.97□□□□□ -2.25
SMCHD1A6NHR9 Y_RNA.430-201ENST00000384081 110 ntBASIC0.97□□□□□ -2.25
SMCHD1A6NHR9 RNU6-804P-201ENST00000384286 107 ntBASIC0.97□□□□□ -2.25
SMCHD1A6NHR9 RNU6-1237P-201ENST00000384777 107 ntBASIC0.97□□□□□ -2.25
SMCHD1A6NHR9 RNU2-35P-201ENST00000516446 142 ntBASIC0.97□□□□□ -2.25
SMCHD1A6NHR9 SNORD36C-201ENST00000516733 66 ntBASIC0.97□□□□□ -2.25
SMCHD1A6NHR9 RN7SL793P-201ENST00000583259 296 ntBASIC0.97□□□□□ -2.25
SMCHD1A6NHR9 AC108081.1-201ENST00000604358 221 ntBASIC0.97□□□□□ -2.25
SMCHD1A6NHR9 AP001340.1-201ENST00000624405 217 ntBASIC0.97□□□□□ -2.25
SMCHD1A6NHR9 RNU6-654P-201ENST00000364373 107 ntBASIC0.96□□□□□ -2.26
Retrieved 100 of 98,524 protein–RNA pairs in 119.2 ms