Protein–RNA interactions for Protein: A0A0B4J280

TRAV40, T-cell receptor alpha variable 40 (Fragment), humanhuman

Predictions only

Length 105 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV40A0A0B4J280 Y_RNA.412-201ENST00000384001 104 ntBASIC0.37□□□□□ -2.35
TRAV40A0A0B4J280 Y_RNA.447-201ENST00000384184 113 ntBASIC0.37□□□□□ -2.35
TRAV40A0A0B4J280 Y_RNA.571-201ENST00000384753 98 ntBASIC0.37□□□□□ -2.35
TRAV40A0A0B4J280 TRAJ2-201ENST00000390535 66 ntAPPRIS P1 BASIC0.37□□□□□ -2.35
TRAV40A0A0B4J280 SNORD58.1-201ENST00000391313 66 ntBASIC0.37□□□□□ -2.35
TRAV40A0A0B4J280 RNU4-43P-201ENST00000410628 137 ntBASIC0.37□□□□□ -2.35
TRAV40A0A0B4J280 AC096949.1-201ENST00000412047 152 ntBASIC0.37□□□□□ -2.35
TRAV40A0A0B4J280 MTND3P2-201ENST00000438452 342 ntBASIC0.37□□□□□ -2.35
TRAV40A0A0B4J280 AC012668.1-201ENST00000457625 228 ntTSL 3 BASIC0.37□□□□□ -2.35
TRAV40A0A0B4J280 RNU6-1045P-201ENST00000516321 107 ntBASIC0.37□□□□□ -2.35
TRAV40A0A0B4J280 DEFB131B-201ENST00000530210 213 ntAPPRIS P1 TSL 1 (best) BASIC0.37□□□□□ -2.35
TRAV40A0A0B4J280 AL365205.2-201ENST00000594586 68 ntBASIC0.37□□□□□ -2.35
TRAV40A0A0B4J280 AL353621.2-201ENST00000605340 133 ntBASIC0.37□□□□□ -2.35
TRAV40A0A0B4J280 AC062037.2-201ENST00000610137 73 ntBASIC0.37□□□□□ -2.35
TRAV40A0A0B4J280 AC243829.6-201ENST00000612652 106 ntBASIC0.37□□□□□ -2.35
TRAV40A0A0B4J280 U6.104-201ENST00000637979 90 ntBASIC0.37□□□□□ -2.35
TRAV40A0A0B4J280 AL589743.1-201ENST00000551932 2712 ntBASIC0.37□□□□□ -2.35
TRAV40A0A0B4J280 MIR18A-201ENST00000362310 71 ntBASIC0.36□□□□□ -2.35
TRAV40A0A0B4J280 MIR125B2-201ENST00000385128 89 ntBASIC0.36□□□□□ -2.35
TRAV40A0A0B4J280 RNU6-918P-201ENST00000391219 106 ntBASIC0.36□□□□□ -2.35
TRAV40A0A0B4J280 SNORA26-201ENST00000391286 122 ntBASIC0.36□□□□□ -2.35
TRAV40A0A0B4J280 RNU6ATAC42P-201ENST00000408637 95 ntBASIC0.36□□□□□ -2.35
TRAV40A0A0B4J280 MIR548H3-201ENST00000408771 118 ntBASIC0.36□□□□□ -2.35
TRAV40A0A0B4J280 Y_RNA.618-201ENST00000410949 107 ntBASIC0.36□□□□□ -2.35
TRAV40A0A0B4J280 RNU6-177P-201ENST00000411257 104 ntBASIC0.36□□□□□ -2.35
TRAV40A0A0B4J280 RNU7-102P-201ENST00000458948 62 ntBASIC0.36□□□□□ -2.35
TRAV40A0A0B4J280 Y_RNA.797-201ENST00000515977 94 ntBASIC0.36□□□□□ -2.35
TRAV40A0A0B4J280 RNU4-54P-201ENST00000516428 129 ntBASIC0.36□□□□□ -2.35
TRAV40A0A0B4J280 RNU6-1149P-201ENST00000516810 97 ntBASIC0.36□□□□□ -2.35
TRAV40A0A0B4J280 MRPS18CP4-201ENST00000535821 231 ntBASIC0.36□□□□□ -2.35
TRAV40A0A0B4J280 AC004148.1-201ENST00000571506 398 ntTSL 5 BASIC0.36□□□□□ -2.35
TRAV40A0A0B4J280 MIR378D2-201ENST00000580636 98 ntBASIC0.36□□□□□ -2.35
TRAV40A0A0B4J280 AC010487.4-201ENST00000637027 61 ntBASIC0.36□□□□□ -2.35
TRAV40A0A0B4J280 MIR302B-201ENST00000362188 73 ntBASIC0.35□□□□□ -2.35
TRAV40A0A0B4J280 RNU6-508P-201ENST00000363231 103 ntBASIC0.35□□□□□ -2.35
TRAV40A0A0B4J280 RNU6-103P-201ENST00000363686 107 ntBASIC0.35□□□□□ -2.35
TRAV40A0A0B4J280 Y_RNA.171-201ENST00000363760 102 ntBASIC0.35□□□□□ -2.35
TRAV40A0A0B4J280 RNU6-110P-201ENST00000384508 104 ntBASIC0.35□□□□□ -2.35
TRAV40A0A0B4J280 Y_RNA.542-201ENST00000384641 111 ntBASIC0.35□□□□□ -2.35
TRAV40A0A0B4J280 SNORA68.3-201ENST00000515906 83 ntBASIC0.35□□□□□ -2.35
TRAV40A0A0B4J280 RNU6-126P-201ENST00000516685 103 ntBASIC0.35□□□□□ -2.35
TRAV40A0A0B4J280 RNU7-156P-201ENST00000517214 74 ntBASIC0.35□□□□□ -2.35
TRAV40A0A0B4J280 AL162730.1-201ENST00000605734 292 ntBASIC0.35□□□□□ -2.35
TRAV40A0A0B4J280 AL136317.1-201ENST00000612653 226 ntBASIC0.35□□□□□ -2.35
TRAV40A0A0B4J280 MIR6841-201ENST00000637129 72 ntBASIC0.35□□□□□ -2.35
TRAV40A0A0B4J280 SAMD9-203ENST00000620985 6754 ntAPPRIS P1 TSL 2 BASIC0.34□□□□□ -2.35
TRAV40A0A0B4J280 DEFB131A-201ENST00000334879 213 ntAPPRIS P1 TSL 1 (best) BASIC0.34□□□□□ -2.36
TRAV40A0A0B4J280 RNU6-1082P-201ENST00000364574 107 ntBASIC0.34□□□□□ -2.36
TRAV40A0A0B4J280 VTRNA1-3-201ENST00000365645 89 ntBASIC0.34□□□□□ -2.36
TRAV40A0A0B4J280 RNU6-1292P-201ENST00000383856 107 ntBASIC0.34□□□□□ -2.36
TRAV40A0A0B4J280 RNU6-643P-201ENST00000384018 107 ntBASIC0.34□□□□□ -2.36
TRAV40A0A0B4J280 RNU6-1319P-201ENST00000390855 104 ntBASIC0.34□□□□□ -2.36
TRAV40A0A0B4J280 RNU6-747P-201ENST00000390928 104 ntBASIC0.34□□□□□ -2.36
TRAV40A0A0B4J280 U8.15-201ENST00000390947 134 ntBASIC0.34□□□□□ -2.36
TRAV40A0A0B4J280 RNU6-679P-201ENST00000391003 106 ntBASIC0.34□□□□□ -2.36
TRAV40A0A0B4J280 RNU6-241P-201ENST00000391148 104 ntBASIC0.34□□□□□ -2.36
TRAV40A0A0B4J280 MIR938-201ENST00000401216 83 ntBASIC0.34□□□□□ -2.36
TRAV40A0A0B4J280 LINC00345-201ENST00000443679 285 ntTSL 5 BASIC0.34□□□□□ -2.36
TRAV40A0A0B4J280 MIR18B-201ENST00000454574 71 ntBASIC0.34□□□□□ -2.36
TRAV40A0A0B4J280 AC137770.1-201ENST00000504620 530 ntTSL 3 BASIC0.34□□□□□ -2.36
TRAV40A0A0B4J280 AC040936.1-201ENST00000534543 172 ntTSL 5 BASIC0.34□□□□□ -2.36
TRAV40A0A0B4J280 MIR8066-201ENST00000617280 78 ntBASIC0.34□□□□□ -2.36
TRAV40A0A0B4J280 U4.1-201ENST00000620349 87 ntBASIC0.34□□□□□ -2.36
TRAV40A0A0B4J280 MIR140-201ENST00000385282 100 ntBASIC0.33□□□□□ -2.36
TRAV40A0A0B4J280 MIR1257-201ENST00000408490 117 ntBASIC0.33□□□□□ -2.36
TRAV40A0A0B4J280 RNU6-1219P-201ENST00000516143 112 ntBASIC0.33□□□□□ -2.36
TRAV40A0A0B4J280 SNORD116-25-201ENST00000516517 92 ntBASIC0.33□□□□□ -2.36
TRAV40A0A0B4J280 MIR1273G-201ENST00000577677 100 ntBASIC0.33□□□□□ -2.36
TRAV40A0A0B4J280 AC090897.1-201ENST00000580909 226 ntBASIC0.33□□□□□ -2.36
TRAV40A0A0B4J280 SNORD92-201ENST00000585078 85 ntBASIC0.33□□□□□ -2.36
TRAV40A0A0B4J280 AL662814.1-201ENST00000617364 121 ntBASIC0.33□□□□□ -2.36
TRAV40A0A0B4J280 AC021613.1-201ENST00000623880 111 ntBASIC0.33□□□□□ -2.36
TRAV40A0A0B4J280 SNORA22.1-201ENST00000362701 134 ntBASIC0.32□□□□□ -2.36
TRAV40A0A0B4J280 Y_RNA.274-201ENST00000364714 101 ntBASIC0.32□□□□□ -2.36
TRAV40A0A0B4J280 RNA5SP517-201ENST00000364724 117 ntBASIC0.32□□□□□ -2.36
TRAV40A0A0B4J280 RNU6-275P-201ENST00000364910 107 ntBASIC0.32□□□□□ -2.36
TRAV40A0A0B4J280 SNORA50A-201ENST00000384225 134 ntBASIC0.32□□□□□ -2.36
TRAV40A0A0B4J280 Y_RNA.470-201ENST00000384307 117 ntBASIC0.32□□□□□ -2.36
TRAV40A0A0B4J280 RNU6-364P-201ENST00000384387 107 ntBASIC0.32□□□□□ -2.36
TRAV40A0A0B4J280 RNU6-768P-201ENST00000384683 107 ntBASIC0.32□□□□□ -2.36
TRAV40A0A0B4J280 Y_RNA.588-201ENST00000391254 102 ntBASIC0.32□□□□□ -2.36
TRAV40A0A0B4J280 SNORA79-201ENST00000408376 140 ntBASIC0.32□□□□□ -2.36
TRAV40A0A0B4J280 SNORD93-201ENST00000408813 74 ntBASIC0.32□□□□□ -2.36
TRAV40A0A0B4J280 AC002350.1-201ENST00000490759 375 ntBASIC0.32□□□□□ -2.36
TRAV40A0A0B4J280 RNU6-1023P-201ENST00000516137 106 ntBASIC0.32□□□□□ -2.36
TRAV40A0A0B4J280 AC010177.1-201ENST00000547819 366 ntTSL 3 BASIC0.32□□□□□ -2.36
TRAV40A0A0B4J280 AC141846.1-201ENST00000568348 142 ntBASIC0.32□□□□□ -2.36
TRAV40A0A0B4J280 AC130289.1-201ENST00000577321 73 ntBASIC0.32□□□□□ -2.36
TRAV40A0A0B4J280 Y_RNA.13-201ENST00000362403 112 ntBASIC0.31□□□□□ -2.36
TRAV40A0A0B4J280 Y_RNA.42-201ENST00000362660 108 ntBASIC0.31□□□□□ -2.36
TRAV40A0A0B4J280 Y_RNA.52-201ENST00000362760 96 ntBASIC0.31□□□□□ -2.36
TRAV40A0A0B4J280 SNORA20.1-201ENST00000364790 130 ntBASIC0.31□□□□□ -2.36
TRAV40A0A0B4J280 RNU6-196P-201ENST00000384315 107 ntBASIC0.31□□□□□ -2.36
TRAV40A0A0B4J280 RNU4-70P-201ENST00000384579 139 ntBASIC0.31□□□□□ -2.36
TRAV40A0A0B4J280 MIR644A-201ENST00000385262 94 ntBASIC0.31□□□□□ -2.36
TRAV40A0A0B4J280 SNORD100-201ENST00000408573 76 ntBASIC0.31□□□□□ -2.36
TRAV40A0A0B4J280 RNA5SP127-201ENST00000411051 133 ntBASIC0.31□□□□□ -2.36
TRAV40A0A0B4J280 AC097716.1-201ENST00000509136 180 ntTSL 2 BASIC0.31□□□□□ -2.36
TRAV40A0A0B4J280 Y_RNA.757-201ENST00000578934 114 ntBASIC0.31□□□□□ -2.36
TRAV40A0A0B4J280 MIR3149-201ENST00000584629 83 ntBASIC0.31□□□□□ -2.36
Retrieved 100 of 98,524 protein–RNA pairs in 109.6 ms