Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 MIR4452-201ENST00000583004 71 ntBASIC2.99□□□□□ -1.93
SENP3-EIF4A1A0A087X0R7 CD24P4-201ENST00000382840 243 ntBASIC2.98□□□□□ -1.93
SENP3-EIF4A1A0A087X0R7 TRAJ61-201ENST00000390479 60 ntAPPRIS P1 BASIC2.98□□□□□ -1.93
SENP3-EIF4A1A0A087X0R7 U8.16-201ENST00000391279 133 ntBASIC2.98□□□□□ -1.93
SENP3-EIF4A1A0A087X0R7 SPINT5P-201ENST00000448174 155 ntBASIC2.98□□□□□ -1.93
SENP3-EIF4A1A0A087X0R7 RNA5SP402-201ENST00000517148 110 ntBASIC2.98□□□□□ -1.93
SENP3-EIF4A1A0A087X0R7 SNORA31.26-201ENST00000517250 137 ntBASIC2.98□□□□□ -1.93
SENP3-EIF4A1A0A087X0R7 CYP19A1-220ENST00000613097 123 ntTSL 5 BASIC2.98□□□□□ -1.93
SENP3-EIF4A1A0A087X0R7 AC243994.1-201ENST00000618627 109 ntBASIC2.98□□□□□ -1.93
SENP3-EIF4A1A0A087X0R7 MIR6515-201ENST00000619843 57 ntBASIC2.98□□□□□ -1.93
SENP3-EIF4A1A0A087X0R7 MIR6766-201ENST00000622641 72 ntBASIC2.98□□□□□ -1.93
SENP3-EIF4A1A0A087X0R7 MIR516B2-201ENST00000385190 85 ntBASIC2.97□□□□□ -1.93
SENP3-EIF4A1A0A087X0R7 TRAJ41-201ENST00000390496 62 ntAPPRIS P1 BASIC2.97□□□□□ -1.93
SENP3-EIF4A1A0A087X0R7 RNU1-98P-201ENST00000458992 160 ntBASIC2.97□□□□□ -1.93
SENP3-EIF4A1A0A087X0R7 AC114801.3-201ENST00000510231 177 ntBASIC2.97□□□□□ -1.93
SENP3-EIF4A1A0A087X0R7 RNU7-12P-201ENST00000516030 62 ntBASIC2.97□□□□□ -1.93
SENP3-EIF4A1A0A087X0R7 RNU7-35P-201ENST00000517174 62 ntBASIC2.97□□□□□ -1.93
SENP3-EIF4A1A0A087X0R7 AL513043.2-201ENST00000573941 143 ntBASIC2.97□□□□□ -1.93
SENP3-EIF4A1A0A087X0R7 AC069114.2-201ENST00000604699 304 ntBASIC2.97□□□□□ -1.93
SENP3-EIF4A1A0A087X0R7 FAS-AS1.1-201ENST00000615327 126 ntBASIC2.97□□□□□ -1.93
SENP3-EIF4A1A0A087X0R7 PVT1_3.1-201ENST00000620853 95 ntBASIC2.97□□□□□ -1.93
SENP3-EIF4A1A0A087X0R7 ZNF260-203ENST00000588993 4174 ntAPPRIS P1 TSL 1 (best) BASIC2.96□□□□□ -1.94
SENP3-EIF4A1A0A087X0R7 RNU6-1019P-201ENST00000364424 107 ntBASIC2.96□□□□□ -1.94
SENP3-EIF4A1A0A087X0R7 RNU6-480P-201ENST00000384332 107 ntBASIC2.96□□□□□ -1.94
SENP3-EIF4A1A0A087X0R7 RNU6-913P-201ENST00000390913 95 ntBASIC2.96□□□□□ -1.94
SENP3-EIF4A1A0A087X0R7 RNU6-1307P-201ENST00000391012 103 ntBASIC2.96□□□□□ -1.94
SENP3-EIF4A1A0A087X0R7 RNU6-447P-201ENST00000410293 104 ntBASIC2.96□□□□□ -1.94
SENP3-EIF4A1A0A087X0R7 RNU6-1118P-201ENST00000410382 104 ntBASIC2.96□□□□□ -1.94
SENP3-EIF4A1A0A087X0R7 RNU6-1076P-201ENST00000410397 104 ntBASIC2.96□□□□□ -1.94
SENP3-EIF4A1A0A087X0R7 RNU6-613P-201ENST00000410412 108 ntBASIC2.96□□□□□ -1.94
SENP3-EIF4A1A0A087X0R7 RNU6-355P-201ENST00000410427 104 ntBASIC2.96□□□□□ -1.94
SENP3-EIF4A1A0A087X0R7 RNU6-791P-201ENST00000410467 104 ntBASIC2.96□□□□□ -1.94
SENP3-EIF4A1A0A087X0R7 RNU6-705P-201ENST00000410601 104 ntBASIC2.96□□□□□ -1.94
SENP3-EIF4A1A0A087X0R7 RNU6-1100P-201ENST00000410691 104 ntBASIC2.96□□□□□ -1.94
SENP3-EIF4A1A0A087X0R7 RNU6-860P-201ENST00000410860 104 ntBASIC2.96□□□□□ -1.94
SENP3-EIF4A1A0A087X0R7 RNU6-1217P-201ENST00000411276 104 ntBASIC2.96□□□□□ -1.94
SENP3-EIF4A1A0A087X0R7 RNU6-785P-201ENST00000411324 104 ntBASIC2.96□□□□□ -1.94
SENP3-EIF4A1A0A087X0R7 AC245047.7-201ENST00000440265 293 ntBASIC2.96□□□□□ -1.94
SENP3-EIF4A1A0A087X0R7 SNORA31.10-201ENST00000516482 106 ntBASIC2.96□□□□□ -1.94
SENP3-EIF4A1A0A087X0R7 RNA5SP168-201ENST00000516642 112 ntBASIC2.96□□□□□ -1.94
SENP3-EIF4A1A0A087X0R7 U6.90-201ENST00000614007 104 ntBASIC2.96□□□□□ -1.94
SENP3-EIF4A1A0A087X0R7 U6.70-201ENST00000620287 104 ntBASIC2.96□□□□□ -1.94
SENP3-EIF4A1A0A087X0R7 ROCK2-203ENST00000401753 4017 ntTSL 1 (best) BASIC2.96□□□□□ -1.94
SENP3-EIF4A1A0A087X0R7 RNU6-1094P-201ENST00000362416 104 ntBASIC2.95□□□□□ -1.94
SENP3-EIF4A1A0A087X0R7 Y_RNA.354-201ENST00000365448 111 ntBASIC2.95□□□□□ -1.94
SENP3-EIF4A1A0A087X0R7 Y_RNA.448-201ENST00000384185 108 ntBASIC2.95□□□□□ -1.94
SENP3-EIF4A1A0A087X0R7 RNU6-342P-201ENST00000384521 104 ntBASIC2.95□□□□□ -1.94
SENP3-EIF4A1A0A087X0R7 RNU6-1067P-201ENST00000384752 107 ntBASIC2.95□□□□□ -1.94
SENP3-EIF4A1A0A087X0R7 RNU6-220P-201ENST00000390919 107 ntBASIC2.95□□□□□ -1.94
SENP3-EIF4A1A0A087X0R7 RNU6-129P-201ENST00000391022 107 ntBASIC2.95□□□□□ -1.94
SENP3-EIF4A1A0A087X0R7 AC104332.2-201ENST00000429959 156 ntBASIC2.95□□□□□ -1.94
SENP3-EIF4A1A0A087X0R7 AC005786.1-201ENST00000588553 154 ntBASIC2.95□□□□□ -1.94
SENP3-EIF4A1A0A087X0R7 CHORDC1-205ENST00000529726 4805 ntTSL 2 BASIC2.95□□□□□ -1.94
SENP3-EIF4A1A0A087X0R7 FGF7-206ENST00000614567 3936 ntAPPRIS P1 TSL 1 (best) BASIC2.94□□□□□ -1.94
SENP3-EIF4A1A0A087X0R7 PNRC2-204ENST00000579103 171 ntTSL 2 BASIC2.94□□□□□ -1.94
SENP3-EIF4A1A0A087X0R7 G3BP1-214ENST00000627077 114 ntTSL 5 BASIC2.94□□□□□ -1.94
SENP3-EIF4A1A0A087X0R7 OR2L2-202ENST00000641771 4300 ntAPPRIS P1 BASIC2.93□□□□□ -1.94
SENP3-EIF4A1A0A087X0R7 PYGO1-201ENST00000302000 8488 ntTSL 1 (best) BASIC2.93□□□□□ -1.94
SENP3-EIF4A1A0A087X0R7 Y_RNA.168-201ENST00000363740 102 ntBASIC2.93□□□□□ -1.94
SENP3-EIF4A1A0A087X0R7 Y_RNA.173-201ENST00000363776 113 ntBASIC2.93□□□□□ -1.94
SENP3-EIF4A1A0A087X0R7 AP1B1P2-201ENST00000416196 106 ntBASIC2.93□□□□□ -1.94
SENP3-EIF4A1A0A087X0R7 TTTY16-201ENST00000437686 192 ntTSL 1 (best) BASIC2.93□□□□□ -1.94
SENP3-EIF4A1A0A087X0R7 RPS29P12-201ENST00000460178 152 ntBASIC2.93□□□□□ -1.94
SENP3-EIF4A1A0A087X0R7 MIR3616-201ENST00000584070 92 ntBASIC2.93□□□□□ -1.94
SENP3-EIF4A1A0A087X0R7 CCSAP-202ENST00000366686 4399 ntTSL 2 BASIC2.92□□□□□ -1.94
SENP3-EIF4A1A0A087X0R7 AKAP9-202ENST00000358100 10309 ntTSL 1 (best) BASIC2.92□□□□□ -1.94
SENP3-EIF4A1A0A087X0R7 CHD1-201ENST00000284049 6457 ntAPPRIS P1 TSL 1 (best) BASIC2.92□□□□□ -1.94
SENP3-EIF4A1A0A087X0R7 SNORD114-10-201ENST00000363409 72 ntBASIC2.92□□□□□ -1.94
SENP3-EIF4A1A0A087X0R7 Y_RNA.537-201ENST00000384626 109 ntBASIC2.92□□□□□ -1.94
SENP3-EIF4A1A0A087X0R7 MIR1236-201ENST00000408340 102 ntBASIC2.92□□□□□ -1.94
SENP3-EIF4A1A0A087X0R7 RNU6-519P-201ENST00000410590 108 ntBASIC2.92□□□□□ -1.94
SENP3-EIF4A1A0A087X0R7 AC090255.1-201ENST00000495779 349 ntBASIC2.92□□□□□ -1.94
SENP3-EIF4A1A0A087X0R7 SNORD67.1-201ENST00000516618 108 ntBASIC2.92□□□□□ -1.94
SENP3-EIF4A1A0A087X0R7 MTND5P40-201ENST00000559945 246 ntBASIC2.92□□□□□ -1.94
SENP3-EIF4A1A0A087X0R7 U4atac.1-201ENST00000618345 95 ntBASIC2.92□□□□□ -1.94
SENP3-EIF4A1A0A087X0R7 AC012676.2-201ENST00000619258 186 ntBASIC2.92□□□□□ -1.94
SENP3-EIF4A1A0A087X0R7 Y_RNA.98-201ENST00000363109 102 ntBASIC2.91□□□□□ -1.94
SENP3-EIF4A1A0A087X0R7 RNA5SP160-201ENST00000364866 120 ntBASIC2.91□□□□□ -1.94
SENP3-EIF4A1A0A087X0R7 RNA5SP138-201ENST00000365098 114 ntBASIC2.91□□□□□ -1.94
SENP3-EIF4A1A0A087X0R7 MIR181B2-201ENST00000385004 89 ntBASIC2.91□□□□□ -1.94
SENP3-EIF4A1A0A087X0R7 RNU6-1086P-201ENST00000410930 100 ntBASIC2.91□□□□□ -1.94
SENP3-EIF4A1A0A087X0R7 RNU6-602P-201ENST00000411155 105 ntBASIC2.91□□□□□ -1.94
SENP3-EIF4A1A0A087X0R7 AC092427.1-202ENST00000430569 476 ntBASIC2.91□□□□□ -1.94
SENP3-EIF4A1A0A087X0R7 HSPE1P9-201ENST00000440046 311 ntBASIC2.91□□□□□ -1.94
SENP3-EIF4A1A0A087X0R7 snoU13.16-201ENST00000459350 104 ntBASIC2.91□□□□□ -1.94
SENP3-EIF4A1A0A087X0R7 MIR548AR-201ENST00000582191 57 ntBASIC2.91□□□□□ -1.94
SENP3-EIF4A1A0A087X0R7 AC022513.1-201ENST00000624512 117 ntBASIC2.91□□□□□ -1.94
SENP3-EIF4A1A0A087X0R7 FAM46D-201ENST00000308293 3011 ntAPPRIS P1 TSL 1 (best) BASIC2.91□□□□□ -1.94
SENP3-EIF4A1A0A087X0R7 THOC2-216ENST00000491737 4452 ntTSL 5 BASIC2.9□□□□□ -1.94
SENP3-EIF4A1A0A087X0R7 MIR583-201ENST00000384846 75 ntBASIC2.9□□□□□ -1.95
SENP3-EIF4A1A0A087X0R7 SNORD123-201ENST00000459473 70 ntBASIC2.9□□□□□ -1.95
SENP3-EIF4A1A0A087X0R7 AC008115.2-201ENST00000539988 241 ntTSL 3 BASIC2.9□□□□□ -1.95
SENP3-EIF4A1A0A087X0R7 AC026271.5-201ENST00000577873 130 ntBASIC2.9□□□□□ -1.95
SENP3-EIF4A1A0A087X0R7 FAM106DP-201ENST00000586416 501 ntBASIC2.9□□□□□ -1.95
SENP3-EIF4A1A0A087X0R7 GABRA2-209ENST00000510861 3411 ntAPPRIS P1 TSL 5 BASIC2.9□□□□□ -1.95
SENP3-EIF4A1A0A087X0R7 Y_RNA.68-201ENST00000362881 102 ntBASIC2.89□□□□□ -1.95
SENP3-EIF4A1A0A087X0R7 RNU6-1321P-201ENST00000390905 107 ntBASIC2.89□□□□□ -1.95
SENP3-EIF4A1A0A087X0R7 SNORD28B-201ENST00000390993 75 ntBASIC2.89□□□□□ -1.95
SENP3-EIF4A1A0A087X0R7 RNU6-380P-201ENST00000410207 107 ntBASIC2.89□□□□□ -1.95
SENP3-EIF4A1A0A087X0R7 RNU7-48P-201ENST00000458875 63 ntBASIC2.89□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 169.5 ms