Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 ZBBX-205ENST00000455345 3185 ntAPPRIS ALT2 TSL 1 (best) BASIC3.18□□□□□ -1.9
VPS9D1Q9Y2B5 MIR424-201ENST00000362227 98 ntBASIC3.18□□□□□ -1.9
VPS9D1Q9Y2B5 Y_RNA.606-201ENST00000410579 103 ntBASIC3.18□□□□□ -1.9
VPS9D1Q9Y2B5 AC099513.1-201ENST00000490423 301 ntBASIC3.18□□□□□ -1.9
VPS9D1Q9Y2B5 RNA5SP445-201ENST00000515889 115 ntBASIC3.18□□□□□ -1.9
VPS9D1Q9Y2B5 RNU1-143P-201ENST00000516296 146 ntBASIC3.18□□□□□ -1.9
VPS9D1Q9Y2B5 SCARNA20.6-201ENST00000517251 106 ntBASIC3.18□□□□□ -1.9
VPS9D1Q9Y2B5 AC008115.2-201ENST00000539988 241 ntTSL 3 BASIC3.18□□□□□ -1.9
VPS9D1Q9Y2B5 SUB1P4-201ENST00000566062 339 ntBASIC3.18□□□□□ -1.9
VPS9D1Q9Y2B5 SNORA4-201ENST00000584302 138 ntBASIC3.18□□□□□ -1.9
VPS9D1Q9Y2B5 U1.23-201ENST00000610293 146 ntBASIC3.18□□□□□ -1.9
VPS9D1Q9Y2B5 RNU1-68P-201ENST00000615382 146 ntBASIC3.18□□□□□ -1.9
VPS9D1Q9Y2B5 U1.39-201ENST00000621562 146 ntBASIC3.18□□□□□ -1.9
VPS9D1Q9Y2B5 PRKAA2-201ENST00000371244 9347 ntAPPRIS P2 TSL 1 (best) BASIC3.17□□□□□ -1.9
VPS9D1Q9Y2B5 LIG4-203ENST00000442234 3982 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
VPS9D1Q9Y2B5 GNAI3-201ENST00000369851 27174 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
VPS9D1Q9Y2B5 SNORD115-22-201ENST00000364456 82 ntBASIC3.17□□□□□ -1.9
VPS9D1Q9Y2B5 SNORD116-24-201ENST00000384549 92 ntBASIC3.17□□□□□ -1.9
VPS9D1Q9Y2B5 MIR588-201ENST00000384900 83 ntBASIC3.17□□□□□ -1.9
VPS9D1Q9Y2B5 RNU4-47P-201ENST00000410876 114 ntBASIC3.17□□□□□ -1.9
VPS9D1Q9Y2B5 RNU6-977P-201ENST00000516411 103 ntBASIC3.17□□□□□ -1.9
VPS9D1Q9Y2B5 MIR2682-201ENST00000580305 110 ntBASIC3.17□□□□□ -1.9
VPS9D1Q9Y2B5 MIR3651-201ENST00000630427 90 ntBASIC3.17□□□□□ -1.9
VPS9D1Q9Y2B5 PRKACB-219ENST00000614872 4306 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
VPS9D1Q9Y2B5 LPP-221ENST00000618621 18277 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
VPS9D1Q9Y2B5 LPP-222ENST00000640853 18277 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
VPS9D1Q9Y2B5 SPEF2-203ENST00000440995 5964 ntAPPRIS ALT2 TSL 5 BASIC3.16□□□□□ -1.9
VPS9D1Q9Y2B5 SNORA67.4-201ENST00000384688 142 ntBASIC3.16□□□□□ -1.9
VPS9D1Q9Y2B5 AC244023.1-201ENST00000426884 112 ntBASIC3.16□□□□□ -1.9
VPS9D1Q9Y2B5 AC018495.1-201ENST00000440266 452 ntTSL 3 BASIC3.16□□□□□ -1.9
VPS9D1Q9Y2B5 AL020994.3-201ENST00000449126 274 ntTSL 3 BASIC3.16□□□□□ -1.9
VPS9D1Q9Y2B5 snoU13.27-201ENST00000459278 104 ntBASIC3.16□□□□□ -1.9
VPS9D1Q9Y2B5 RNA5SP437-201ENST00000517249 129 ntBASIC3.16□□□□□ -1.9
VPS9D1Q9Y2B5 AC242498.1-201ENST00000604134 111 ntBASIC3.16□□□□□ -1.9
VPS9D1Q9Y2B5 AC069503.3-201ENST00000618674 145 ntBASIC3.16□□□□□ -1.9
VPS9D1Q9Y2B5 ANKAR-209ENST00000520309 4410 ntAPPRIS P1 TSL 5 BASIC3.16□□□□□ -1.9
VPS9D1Q9Y2B5 NEB-220ENST00000618972 26307 ntAPPRIS ALT2 TSL 5 BASIC3.16□□□□□ -1.9
VPS9D1Q9Y2B5 IDE-201ENST00000265986 5877 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
VPS9D1Q9Y2B5 ZNF209P-201ENST00000593450 2304 ntBASIC3.15□□□□□ -1.9
VPS9D1Q9Y2B5 RNU6-461P-201ENST00000364195 107 ntBASIC3.15□□□□□ -1.91
VPS9D1Q9Y2B5 SNORD21-201ENST00000383953 95 ntBASIC3.15□□□□□ -1.91
VPS9D1Q9Y2B5 MIR597-201ENST00000384968 97 ntBASIC3.15□□□□□ -1.91
VPS9D1Q9Y2B5 TRAJ31-201ENST00000390506 57 ntAPPRIS P1 BASIC3.15□□□□□ -1.91
VPS9D1Q9Y2B5 RNU11-3P-201ENST00000391111 133 ntBASIC3.15□□□□□ -1.91
VPS9D1Q9Y2B5 SNORD63B-201ENST00000411005 70 ntBASIC3.15□□□□□ -1.91
VPS9D1Q9Y2B5 AC245166.1-201ENST00000521012 253 ntBASIC3.15□□□□□ -1.91
VPS9D1Q9Y2B5 CERS3-AS1-201ENST00000560643 372 ntTSL 3 BASIC3.15□□□□□ -1.91
VPS9D1Q9Y2B5 U4.3-201ENST00000621047 82 ntBASIC3.15□□□□□ -1.91
VPS9D1Q9Y2B5 ZFYVE16-202ENST00000505560 6599 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.91
VPS9D1Q9Y2B5 MME-216ENST00000615825 5523 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.91
VPS9D1Q9Y2B5 PRKACB-217ENST00000610457 4206 ntTSL 2 BASIC3.14□□□□□ -1.91
VPS9D1Q9Y2B5 PRKACB-218ENST00000610703 4240 ntTSL 2 BASIC3.14□□□□□ -1.91
VPS9D1Q9Y2B5 DMD-203ENST00000357033 13956 ntAPPRIS P3 TSL 1 (best) BASIC3.14□□□□□ -1.91
VPS9D1Q9Y2B5 Y_RNA.239-201ENST00000364444 113 ntBASIC3.14□□□□□ -1.91
VPS9D1Q9Y2B5 MIR563-201ENST00000385080 79 ntBASIC3.14□□□□□ -1.91
VPS9D1Q9Y2B5 AC104389.3-201ENST00000445629 235 ntBASIC3.14□□□□□ -1.91
VPS9D1Q9Y2B5 RNU6-1194P-201ENST00000516208 104 ntBASIC3.14□□□□□ -1.91
VPS9D1Q9Y2B5 RNA5SP380-201ENST00000517190 98 ntBASIC3.14□□□□□ -1.91
VPS9D1Q9Y2B5 PCNP-208ENST00000627393 136 ntTSL 2 BASIC3.14□□□□□ -1.91
VPS9D1Q9Y2B5 MIR622-201ENST00000638396 96 ntBASIC3.14□□□□□ -1.91
VPS9D1Q9Y2B5 PHF6-201ENST00000332070 4759 ntAPPRIS P2 TSL 1 (best) BASIC3.13□□□□□ -1.91
VPS9D1Q9Y2B5 ZBTB6-201ENST00000373659 4106 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
VPS9D1Q9Y2B5 HDX-206ENST00000506585 6158 ntTSL 2 BASIC3.13□□□□□ -1.91
VPS9D1Q9Y2B5 MIR148B-201ENST00000362252 99 ntBASIC3.13□□□□□ -1.91
VPS9D1Q9Y2B5 SNORD113.1-201ENST00000363280 73 ntBASIC3.13□□□□□ -1.91
VPS9D1Q9Y2B5 RN7SKP220-201ENST00000410611 288 ntBASIC3.13□□□□□ -1.91
VPS9D1Q9Y2B5 AC104332.2-201ENST00000429959 156 ntBASIC3.13□□□□□ -1.91
VPS9D1Q9Y2B5 AC009474.2-201ENST00000451383 136 ntBASIC3.13□□□□□ -1.91
VPS9D1Q9Y2B5 RN7SL601P-201ENST00000471221 293 ntBASIC3.13□□□□□ -1.91
VPS9D1Q9Y2B5 RNA5SP481-201ENST00000516814 122 ntBASIC3.13□□□□□ -1.91
VPS9D1Q9Y2B5 AC022202.1-201ENST00000613515 211 ntBASIC3.13□□□□□ -1.91
VPS9D1Q9Y2B5 AC131280.1-202ENST00000624067 4211 ntBASIC3.13□□□□□ -1.91
VPS9D1Q9Y2B5 EXOC6-203ENST00000371552 3564 ntTSL 5 BASIC3.12□□□□□ -1.91
VPS9D1Q9Y2B5 IKZF2-213ENST00000457361 9350 ntTSL 5 BASIC3.12□□□□□ -1.91
VPS9D1Q9Y2B5 RTKN2-202ENST00000373789 6641 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
VPS9D1Q9Y2B5 PRKG2-206ENST00000545647 3852 ntTSL 5 BASIC3.12□□□□□ -1.91
VPS9D1Q9Y2B5 SNORD15B-201ENST00000384714 146 ntBASIC3.12□□□□□ -1.91
VPS9D1Q9Y2B5 RNA5SP274-201ENST00000410484 108 ntBASIC3.12□□□□□ -1.91
VPS9D1Q9Y2B5 AL365277.2-201ENST00000415255 551 ntTSL 3 BASIC3.12□□□□□ -1.91
VPS9D1Q9Y2B5 RPS27P16-201ENST00000425758 201 ntBASIC3.12□□□□□ -1.91
VPS9D1Q9Y2B5 AC005326.1-201ENST00000429197 123 ntBASIC3.12□□□□□ -1.91
VPS9D1Q9Y2B5 MIR2113-201ENST00000459007 91 ntBASIC3.12□□□□□ -1.91
VPS9D1Q9Y2B5 VPS35-212ENST00000640313 141 ntTSL 5 BASIC3.12□□□□□ -1.91
VPS9D1Q9Y2B5 ATP2B1-201ENST00000261173 6777 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
VPS9D1Q9Y2B5 SLC30A6-202ENST00000357055 4758 ntTSL 2 BASIC3.11□□□□□ -1.91
VPS9D1Q9Y2B5 SNORA7.4-201ENST00000384249 137 ntBASIC3.11□□□□□ -1.91
VPS9D1Q9Y2B5 UQCRHP3-201ENST00000451503 251 ntBASIC3.11□□□□□ -1.91
VPS9D1Q9Y2B5 RNU7-41P-201ENST00000515917 61 ntBASIC3.11□□□□□ -1.91
VPS9D1Q9Y2B5 RNVU1-2-201ENST00000516326 135 ntBASIC3.11□□□□□ -1.91
VPS9D1Q9Y2B5 TRAJ37-201ENST00000612375 65 ntAPPRIS P1 BASIC3.11□□□□□ -1.91
VPS9D1Q9Y2B5 AL449363.1-201ENST00000617815 186 ntBASIC3.11□□□□□ -1.91
VPS9D1Q9Y2B5 ROCK2-203ENST00000401753 4017 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
VPS9D1Q9Y2B5 PIK3C2G-206ENST00000538779 4963 ntTSL 5 BASIC3.1□□□□□ -1.91
VPS9D1Q9Y2B5 SNORA46-201ENST00000384762 135 ntBASIC3.1□□□□□ -1.91
VPS9D1Q9Y2B5 SNORA48.2-201ENST00000390926 124 ntBASIC3.1□□□□□ -1.91
VPS9D1Q9Y2B5 SNORA40.6-201ENST00000391153 128 ntBASIC3.1□□□□□ -1.91
VPS9D1Q9Y2B5 RNA5SP120-201ENST00000410900 112 ntBASIC3.1□□□□□ -1.91
VPS9D1Q9Y2B5 RN7SL863P-201ENST00000462370 296 ntBASIC3.1□□□□□ -1.91
VPS9D1Q9Y2B5 AC097510.1-201ENST00000510945 133 ntBASIC3.1□□□□□ -1.91
VPS9D1Q9Y2B5 CSNK1G3-202ENST00000360683 4047 ntAPPRIS ALT2 TSL 1 (best) BASIC3.1□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 517.7 ms