Protein–RNA interactions for Protein: Q9NY35

CLDND1, Claudin domain-containing protein 1, humanhuman

Predictions only

Length 253 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDND1Q9NY35 RNU6-1258P-201ENST00000516911 111 ntBASIC1.99□□□□□ -2.09
CLDND1Q9NY35 MIR3163-201ENST00000581592 73 ntBASIC1.99□□□□□ -2.09
CLDND1Q9NY35 MIR8074-201ENST00000615081 81 ntBASIC1.99□□□□□ -2.09
CLDND1Q9NY35 Metazoa_SRP.32-201ENST00000622685 286 ntBASIC1.99□□□□□ -2.09
CLDND1Q9NY35 ZDBF2-202ENST00000611847 9890 ntTSL 5 BASIC1.99□□□□□ -2.09
CLDND1Q9NY35 AC003984.1-201ENST00000450977 4104 ntTSL 1 (best) BASIC1.98□□□□□ -2.09
CLDND1Q9NY35 SNORA22.1-201ENST00000362701 134 ntBASIC1.98□□□□□ -2.09
CLDND1Q9NY35 Y_RNA.171-201ENST00000363760 102 ntBASIC1.98□□□□□ -2.09
CLDND1Q9NY35 RNU6-1107P-201ENST00000364817 104 ntBASIC1.98□□□□□ -2.09
CLDND1Q9NY35 Y_RNA.430-201ENST00000384081 110 ntBASIC1.98□□□□□ -2.09
CLDND1Q9NY35 Y_RNA.531-201ENST00000384589 121 ntBASIC1.98□□□□□ -2.09
CLDND1Q9NY35 MIR9-3-201ENST00000385084 90 ntBASIC1.98□□□□□ -2.09
CLDND1Q9NY35 IGHVII-40-1-201ENST00000517316 58 ntBASIC1.98□□□□□ -2.09
CLDND1Q9NY35 MIR4303-201ENST00000581299 66 ntBASIC1.98□□□□□ -2.09
CLDND1Q9NY35 BX248123.2-201ENST00000606318 124 ntBASIC1.98□□□□□ -2.09
CLDND1Q9NY35 FSIP2-206ENST00000611759 3882 ntAPPRIS ALT2 TSL 5 BASIC1.98□□□□□ -2.09
CLDND1Q9NY35 LRRCC1-202ENST00000414626 4493 ntAPPRIS ALT2 TSL 1 (best) BASIC1.98□□□□□ -2.09
CLDND1Q9NY35 LCORL-202ENST00000382224 4984 ntAPPRIS ALT2 TSL 5 BASIC1.98□□□□□ -2.09
CLDND1Q9NY35 MIR548D2-201ENST00000384955 97 ntBASIC1.97□□□□□ -2.09
CLDND1Q9NY35 SNORD41-201ENST00000386967 70 ntBASIC1.97□□□□□ -2.09
CLDND1Q9NY35 AL356379.1-201ENST00000414105 126 ntBASIC1.97□□□□□ -2.09
CLDND1Q9NY35 RPS23P4-201ENST00000487908 423 ntBASIC1.97□□□□□ -2.09
CLDND1Q9NY35 MIR5002-201ENST00000584713 97 ntBASIC1.97□□□□□ -2.09
CLDND1Q9NY35 AC103810.8-201ENST00000607347 118 ntBASIC1.97□□□□□ -2.09
CLDND1Q9NY35 MIR8055-201ENST00000610739 97 ntBASIC1.97□□□□□ -2.09
CLDND1Q9NY35 C16orf97-206ENST00000622950 415 ntTSL 2 BASIC1.97□□□□□ -2.09
CLDND1Q9NY35 AL589743.1-201ENST00000551932 2712 ntBASIC1.96□□□□□ -2.1
CLDND1Q9NY35 SNORA63.5-201ENST00000363548 123 ntBASIC1.96□□□□□ -2.1
CLDND1Q9NY35 RNU6-147P-201ENST00000383983 107 ntBASIC1.96□□□□□ -2.1
CLDND1Q9NY35 HMGN1P33-201ENST00000432945 451 ntBASIC1.96□□□□□ -2.1
CLDND1Q9NY35 RNU7-113P-201ENST00000459273 62 ntBASIC1.96□□□□□ -2.1
CLDND1Q9NY35 RNU6-250P-201ENST00000516958 103 ntBASIC1.96□□□□□ -2.1
CLDND1Q9NY35 AC090616.3-202ENST00000583346 205 ntTSL 2 BASIC1.96□□□□□ -2.1
CLDND1Q9NY35 AL513534.2-201ENST00000603836 250 ntBASIC1.96□□□□□ -2.1
CLDND1Q9NY35 uc_338.28-201ENST00000612082 187 ntBASIC1.96□□□□□ -2.1
CLDND1Q9NY35 USP53-202ENST00000450251 6072 ntAPPRIS P1 TSL 5 BASIC1.96□□□□□ -2.1
CLDND1Q9NY35 KIF20B-202ENST00000371728 6419 ntAPPRIS ALT2 TSL 1 (best) BASIC1.95□□□□□ -2.1
CLDND1Q9NY35 ZGRF1-203ENST00000445203 6529 ntAPPRIS P1 TSL 5 BASIC1.95□□□□□ -2.1
CLDND1Q9NY35 SNORD115-2-201ENST00000362842 82 ntBASIC1.95□□□□□ -2.1
CLDND1Q9NY35 SNORD115-20-201ENST00000365099 82 ntBASIC1.95□□□□□ -2.1
CLDND1Q9NY35 Y_RNA.344-201ENST00000365381 112 ntBASIC1.95□□□□□ -2.1
CLDND1Q9NY35 RNU6-106P-201ENST00000384405 107 ntBASIC1.95□□□□□ -2.1
CLDND1Q9NY35 SNORA67.5-201ENST00000391036 107 ntBASIC1.95□□□□□ -2.1
CLDND1Q9NY35 RPS27P21-201ENST00000486977 252 ntBASIC1.95□□□□□ -2.1
CLDND1Q9NY35 RNU7-41P-201ENST00000515917 61 ntBASIC1.95□□□□□ -2.1
CLDND1Q9NY35 RNU6-922P-201ENST00000516753 99 ntBASIC1.95□□□□□ -2.1
CLDND1Q9NY35 RNU7-6P-201ENST00000516845 62 ntBASIC1.95□□□□□ -2.1
CLDND1Q9NY35 AC036222.2-201ENST00000579033 333 ntTSL 3 BASIC1.95□□□□□ -2.1
CLDND1Q9NY35 MIR6840-201ENST00000611937 71 ntBASIC1.95□□□□□ -2.1
CLDND1Q9NY35 AP000648.3-201ENST00000623539 4507 ntBASIC1.94□□□□□ -2.1
CLDND1Q9NY35 ATP6V0E1P3-201ENST00000420036 246 ntBASIC1.94□□□□□ -2.1
CLDND1Q9NY35 RNA5SP233-201ENST00000459153 113 ntBASIC1.94□□□□□ -2.1
CLDND1Q9NY35 AC113410.1-201ENST00000505029 247 ntBASIC1.94□□□□□ -2.1
CLDND1Q9NY35 SNORD111.1-201ENST00000516421 86 ntBASIC1.94□□□□□ -2.1
CLDND1Q9NY35 MIR3613-201ENST00000579844 87 ntBASIC1.94□□□□□ -2.1
CLDND1Q9NY35 MIR5694-201ENST00000581190 76 ntBASIC1.94□□□□□ -2.1
CLDND1Q9NY35 MIR4251-201ENST00000635819 61 ntBASIC1.94□□□□□ -2.1
CLDND1Q9NY35 Z97988.1-201ENST00000637697 135 ntBASIC1.94□□□□□ -2.1
CLDND1Q9NY35 PTPRQ-208ENST00000614701 8289 ntAPPRIS P1 TSL 5 BASIC1.94□□□□□ -2.1
CLDND1Q9NY35 KIAA1551-201ENST00000312561 6230 ntAPPRIS P1 TSL 1 (best) BASIC1.94□□□□□ -2.1
CLDND1Q9NY35 Y_RNA.49-201ENST00000362714 112 ntBASIC1.93□□□□□ -2.1
CLDND1Q9NY35 SNORA1.1-201ENST00000364671 133 ntBASIC1.93□□□□□ -2.1
CLDND1Q9NY35 Y_RNA.323-201ENST00000365157 109 ntBASIC1.93□□□□□ -2.1
CLDND1Q9NY35 RNA5SP37-201ENST00000365420 130 ntBASIC1.93□□□□□ -2.1
CLDND1Q9NY35 Y_RNA.470-201ENST00000384307 117 ntBASIC1.93□□□□□ -2.1
CLDND1Q9NY35 MIR7-2-201ENST00000384970 110 ntBASIC1.93□□□□□ -2.1
CLDND1Q9NY35 RNU6-554P-201ENST00000410466 106 ntBASIC1.93□□□□□ -2.1
CLDND1Q9NY35 RPS3AP1-201ENST00000413190 320 ntBASIC1.93□□□□□ -2.1
CLDND1Q9NY35 AC073127.1-201ENST00000447336 333 ntTSL 3 BASIC1.93□□□□□ -2.1
CLDND1Q9NY35 AC090255.1-201ENST00000495779 349 ntBASIC1.93□□□□□ -2.1
CLDND1Q9NY35 RPS29P11-201ENST00000496507 171 ntBASIC1.93□□□□□ -2.1
CLDND1Q9NY35 AC121758.2-201ENST00000553271 193 ntBASIC1.93□□□□□ -2.1
CLDND1Q9NY35 MIR548AO-201ENST00000579992 96 ntBASIC1.93□□□□□ -2.1
CLDND1Q9NY35 RNU6-94P-201ENST00000607728 107 ntBASIC1.93□□□□□ -2.1
CLDND1Q9NY35 AL627230.6-201ENST00000611129 280 ntBASIC1.93□□□□□ -2.1
CLDND1Q9NY35 TRAJ36-201ENST00000614481 58 ntAPPRIS P1 BASIC1.93□□□□□ -2.1
CLDND1Q9NY35 AC087741.2-201ENST00000619415 172 ntBASIC1.93□□□□□ -2.1
CLDND1Q9NY35 ATP13A3-201ENST00000256031 7322 ntAPPRIS P1 TSL 5 BASIC1.93□□□□□ -2.1
CLDND1Q9NY35 Y_RNA.299-201ENST00000364973 94 ntBASIC1.92□□□□□ -2.1
CLDND1Q9NY35 RNU6-1014P-201ENST00000383940 103 ntBASIC1.92□□□□□ -2.1
CLDND1Q9NY35 RNU6-717P-201ENST00000459076 104 ntBASIC1.92□□□□□ -2.1
CLDND1Q9NY35 AC025033.1-201ENST00000463883 194 ntBASIC1.92□□□□□ -2.1
CLDND1Q9NY35 RPL39P34-201ENST00000477141 156 ntBASIC1.92□□□□□ -2.1
CLDND1Q9NY35 MIR502-201ENST00000606349 86 ntBASIC1.92□□□□□ -2.1
CLDND1Q9NY35 AL512598.1-201ENST00000610158 273 ntBASIC1.92□□□□□ -2.1
CLDND1Q9NY35 THOC2-216ENST00000491737 4452 ntTSL 5 BASIC1.91□□□□□ -2.1
CLDND1Q9NY35 MIR302D-201ENST00000362275 68 ntBASIC1.91□□□□□ -2.1
CLDND1Q9NY35 RNA5SP160-201ENST00000364866 120 ntBASIC1.91□□□□□ -2.1
CLDND1Q9NY35 RNU4-69P-201ENST00000410677 143 ntBASIC1.91□□□□□ -2.1
CLDND1Q9NY35 AL031737.1-201ENST00000450125 223 ntBASIC1.91□□□□□ -2.1
CLDND1Q9NY35 RNU7-95P-201ENST00000459222 64 ntBASIC1.91□□□□□ -2.1
CLDND1Q9NY35 AC005908.1-201ENST00000468701 347 ntBASIC1.91□□□□□ -2.1
CLDND1Q9NY35 RNU1-40P-201ENST00000516816 164 ntBASIC1.91□□□□□ -2.1
CLDND1Q9NY35 RNU1-97P-201ENST00000516872 164 ntBASIC1.91□□□□□ -2.1
CLDND1Q9NY35 AL357312.1-201ENST00000603879 298 ntBASIC1.91□□□□□ -2.1
CLDND1Q9NY35 AP000553.5-201ENST00000641933 54 ntBASIC1.91□□□□□ -2.1
CLDND1Q9NY35 SI-201ENST00000264382 6011 ntAPPRIS P1 TSL 1 (best) BASIC1.91□□□□□ -2.1
CLDND1Q9NY35 LINC00643-201ENST00000334389 3247 ntTSL 2 BASIC1.91□□□□□ -2.1
CLDND1Q9NY35 MIR450A1-201ENST00000362262 91 ntBASIC1.9□□□□□ -2.11
CLDND1Q9NY35 SNORD115-19-201ENST00000363098 82 ntBASIC1.9□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 254 ms