Protein–RNA interactions for Protein: Q9NUD5

ZCCHC3, Zinc finger CCHC domain-containing protein 3, humanhuman

Known RBP Predictions only

Length 404 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZCCHC3Q9NUD5 RNA5SP134-201ENST00000516492 96 ntBASIC0.3□□□□□ -2.36
ZCCHC3Q9NUD5 MIR5197-201ENST00000583721 112 ntBASIC0.3□□□□□ -2.36
ZCCHC3Q9NUD5 AC243829.6-201ENST00000612652 106 ntBASIC0.3□□□□□ -2.36
ZCCHC3Q9NUD5 AL365265.1-201ENST00000621045 234 ntBASIC0.3□□□□□ -2.36
ZCCHC3Q9NUD5 MIR6734-201ENST00000621166 68 ntBASIC0.3□□□□□ -2.36
ZCCHC3Q9NUD5 Y_RNA.430-201ENST00000384081 110 ntBASIC0.29□□□□□ -2.36
ZCCHC3Q9NUD5 Y_RNA.454-201ENST00000384224 113 ntBASIC0.29□□□□□ -2.36
ZCCHC3Q9NUD5 SNORA40.8-201ENST00000411034 126 ntBASIC0.29□□□□□ -2.36
ZCCHC3Q9NUD5 AL136320.1-201ENST00000417273 430 ntTSL 3 BASIC0.29□□□□□ -2.36
ZCCHC3Q9NUD5 AL135790.1-201ENST00000427161 157 ntTSL 3 BASIC0.29□□□□□ -2.36
ZCCHC3Q9NUD5 Y_RNA.676-201ENST00000516393 96 ntBASIC0.29□□□□□ -2.36
ZCCHC3Q9NUD5 MIR3129-201ENST00000581095 76 ntBASIC0.29□□□□□ -2.36
ZCCHC3Q9NUD5 AC044792.1-201ENST00000593294 196 ntBASIC0.29□□□□□ -2.36
ZCCHC3Q9NUD5 uc_338.16-201ENST00000621804 95 ntBASIC0.29□□□□□ -2.36
ZCCHC3Q9NUD5 Y_RNA.122-201ENST00000363331 96 ntBASIC0.28□□□□□ -2.36
ZCCHC3Q9NUD5 RNA5SP117-201ENST00000365294 118 ntBASIC0.28□□□□□ -2.36
ZCCHC3Q9NUD5 RNU6-1327P-201ENST00000365302 105 ntBASIC0.28□□□□□ -2.36
ZCCHC3Q9NUD5 RNU6-1292P-201ENST00000383856 107 ntBASIC0.28□□□□□ -2.36
ZCCHC3Q9NUD5 RNU6-1227P-201ENST00000383981 107 ntBASIC0.28□□□□□ -2.36
ZCCHC3Q9NUD5 Y_RNA.512-201ENST00000384518 102 ntBASIC0.28□□□□□ -2.36
ZCCHC3Q9NUD5 TRAJ2-201ENST00000390535 66 ntAPPRIS P1 BASIC0.28□□□□□ -2.36
ZCCHC3Q9NUD5 Y_RNA.618-201ENST00000410949 107 ntBASIC0.28□□□□□ -2.36
ZCCHC3Q9NUD5 SNORD71-201ENST00000411292 86 ntBASIC0.28□□□□□ -2.36
ZCCHC3Q9NUD5 AC108740.1-201ENST00000498629 225 ntBASIC0.28□□□□□ -2.36
ZCCHC3Q9NUD5 Y_RNA.679-201ENST00000516416 91 ntBASIC0.28□□□□□ -2.36
ZCCHC3Q9NUD5 MIR4711-201ENST00000578274 70 ntBASIC0.28□□□□□ -2.36
ZCCHC3Q9NUD5 SNORA4-201ENST00000584302 138 ntBASIC0.28□□□□□ -2.36
ZCCHC3Q9NUD5 MIR8066-201ENST00000617280 78 ntBASIC0.28□□□□□ -2.36
ZCCHC3Q9NUD5 AC091932.4-201ENST00000623386 200 ntBASIC0.28□□□□□ -2.36
ZCCHC3Q9NUD5 Y_RNA.42-201ENST00000362660 108 ntBASIC0.27□□□□□ -2.37
ZCCHC3Q9NUD5 SNORD44.1-201ENST00000363202 61 ntBASIC0.27□□□□□ -2.37
ZCCHC3Q9NUD5 SNORD93-201ENST00000408813 74 ntBASIC0.27□□□□□ -2.37
ZCCHC3Q9NUD5 RNU4-43P-201ENST00000410628 137 ntBASIC0.27□□□□□ -2.37
ZCCHC3Q9NUD5 ATP6V0E1P1-201ENST00000412537 226 ntBASIC0.27□□□□□ -2.37
ZCCHC3Q9NUD5 RNU6-1132P-201ENST00000459214 107 ntBASIC0.27□□□□□ -2.37
ZCCHC3Q9NUD5 RNU6-561P-201ENST00000516222 102 ntBASIC0.27□□□□□ -2.37
ZCCHC3Q9NUD5 AL442663.2-201ENST00000554385 511 ntBASIC0.27□□□□□ -2.37
ZCCHC3Q9NUD5 MIR3678-201ENST00000578455 94 ntBASIC0.27□□□□□ -2.37
ZCCHC3Q9NUD5 AL365205.2-201ENST00000594586 68 ntBASIC0.27□□□□□ -2.37
ZCCHC3Q9NUD5 AL662814.1-201ENST00000617364 121 ntBASIC0.27□□□□□ -2.37
ZCCHC3Q9NUD5 MIR103A1-201ENST00000362165 78 ntBASIC0.26□□□□□ -2.37
ZCCHC3Q9NUD5 SNORD118-201ENST00000363593 134 ntBASIC0.26□□□□□ -2.37
ZCCHC3Q9NUD5 Y_RNA.176-201ENST00000363815 109 ntBASIC0.26□□□□□ -2.37
ZCCHC3Q9NUD5 RNU6-728P-201ENST00000365375 104 ntBASIC0.26□□□□□ -2.37
ZCCHC3Q9NUD5 RNU4-17P-201ENST00000365598 141 ntBASIC0.26□□□□□ -2.37
ZCCHC3Q9NUD5 VTRNA1-3-201ENST00000365645 89 ntBASIC0.26□□□□□ -2.37
ZCCHC3Q9NUD5 Y_RNA.518-201ENST00000384552 113 ntBASIC0.26□□□□□ -2.37
ZCCHC3Q9NUD5 MT-TW-201ENST00000387382 68 ntBASIC0.26□□□□□ -2.37
ZCCHC3Q9NUD5 MIR936-201ENST00000401264 98 ntBASIC0.26□□□□□ -2.37
ZCCHC3Q9NUD5 SNORA79-201ENST00000408376 140 ntBASIC0.26□□□□□ -2.37
ZCCHC3Q9NUD5 RNU4-83P-201ENST00000410863 133 ntBASIC0.26□□□□□ -2.37
ZCCHC3Q9NUD5 RNU6-635P-201ENST00000516651 102 ntBASIC0.26□□□□□ -2.37
ZCCHC3Q9NUD5 AC022523.2-201ENST00000561045 150 ntBASIC0.26□□□□□ -2.37
ZCCHC3Q9NUD5 MIR3152-201ENST00000579801 74 ntBASIC0.26□□□□□ -2.37
ZCCHC3Q9NUD5 MIR8062-201ENST00000621515 85 ntBASIC0.26□□□□□ -2.37
ZCCHC3Q9NUD5 U6.104-201ENST00000637979 90 ntBASIC0.26□□□□□ -2.37
ZCCHC3Q9NUD5 RNU6-597P-201ENST00000365620 102 ntBASIC0.25□□□□□ -2.37
ZCCHC3Q9NUD5 RNU6ATAC42P-201ENST00000408637 95 ntBASIC0.25□□□□□ -2.37
ZCCHC3Q9NUD5 RNA5SP237-201ENST00000410414 113 ntBASIC0.25□□□□□ -2.37
ZCCHC3Q9NUD5 SNRPGP12-201ENST00000449481 213 ntBASIC0.25□□□□□ -2.37
ZCCHC3Q9NUD5 FAM19A1-204ENST00000617084 159 ntTSL 5 BASIC0.25□□□□□ -2.37
ZCCHC3Q9NUD5 AL596211.1-201ENST00000569873 2277 ntBASIC0.25□□□□□ -2.37
ZCCHC3Q9NUD5 RNU6-103P-201ENST00000363686 107 ntBASIC0.24□□□□□ -2.37
ZCCHC3Q9NUD5 Y_RNA.416-201ENST00000384014 113 ntBASIC0.24□□□□□ -2.37
ZCCHC3Q9NUD5 RNU6-42P-201ENST00000384165 107 ntBASIC0.24□□□□□ -2.37
ZCCHC3Q9NUD5 SNORA8.2-201ENST00000384372 139 ntBASIC0.24□□□□□ -2.37
ZCCHC3Q9NUD5 Y_RNA.483-201ENST00000384380 101 ntBASIC0.24□□□□□ -2.37
ZCCHC3Q9NUD5 MIR1302-6-201ENST00000408466 90 ntBASIC0.24□□□□□ -2.37
ZCCHC3Q9NUD5 RNA5SP193-201ENST00000410353 107 ntBASIC0.24□□□□□ -2.37
ZCCHC3Q9NUD5 RPL39P25-201ENST00000449384 154 ntBASIC0.24□□□□□ -2.37
ZCCHC3Q9NUD5 AP003327.1-201ENST00000529684 127 ntBASIC0.24□□□□□ -2.37
ZCCHC3Q9NUD5 AC133485.4-201ENST00000561835 220 ntBASIC0.24□□□□□ -2.37
ZCCHC3Q9NUD5 SNORA25.18-201ENST00000607153 114 ntBASIC0.24□□□□□ -2.37
ZCCHC3Q9NUD5 DLEU2_5.2-201ENST00000610606 84 ntBASIC0.24□□□□□ -2.37
ZCCHC3Q9NUD5 Y_RNA.226-201ENST00000364337 114 ntBASIC0.23□□□□□ -2.37
ZCCHC3Q9NUD5 Y_RNA.422-201ENST00000384054 114 ntBASIC0.23□□□□□ -2.37
ZCCHC3Q9NUD5 Y_RNA.567-201ENST00000384736 106 ntBASIC0.23□□□□□ -2.37
ZCCHC3Q9NUD5 MIR1287-201ENST00000408492 90 ntBASIC0.23□□□□□ -2.37
ZCCHC3Q9NUD5 RNU6-1153P-201ENST00000516760 105 ntBASIC0.23□□□□□ -2.37
ZCCHC3Q9NUD5 AC078938.1-201ENST00000620993 318 ntBASIC0.23□□□□□ -2.37
ZCCHC3Q9NUD5 MIR6841-201ENST00000637129 72 ntBASIC0.23□□□□□ -2.37
ZCCHC3Q9NUD5 Y_RNA.262-201ENST00000364641 102 ntBASIC0.22□□□□□ -2.37
ZCCHC3Q9NUD5 Y_RNA.461-201ENST00000384263 103 ntBASIC0.22□□□□□ -2.37
ZCCHC3Q9NUD5 SNORA20-201ENST00000384662 132 ntBASIC0.22□□□□□ -2.37
ZCCHC3Q9NUD5 U8.15-201ENST00000390947 134 ntBASIC0.22□□□□□ -2.37
ZCCHC3Q9NUD5 SEPT7P4-201ENST00000437076 306 ntBASIC0.22□□□□□ -2.37
ZCCHC3Q9NUD5 RNA5SP436-201ENST00000516020 115 ntBASIC0.22□□□□□ -2.37
ZCCHC3Q9NUD5 AC141846.1-201ENST00000568348 142 ntBASIC0.22□□□□□ -2.37
ZCCHC3Q9NUD5 RNU6-238P-201ENST00000363313 106 ntBASIC0.21□□□□□ -2.38
ZCCHC3Q9NUD5 Y_RNA.238-201ENST00000364441 102 ntBASIC0.21□□□□□ -2.38
ZCCHC3Q9NUD5 Y_RNA.352-201ENST00000365439 102 ntBASIC0.21□□□□□ -2.38
ZCCHC3Q9NUD5 RNU6-472P-201ENST00000384299 107 ntBASIC0.21□□□□□ -2.38
ZCCHC3Q9NUD5 Y_RNA.617-201ENST00000410920 90 ntBASIC0.21□□□□□ -2.38
ZCCHC3Q9NUD5 MTATP8P1-201ENST00000467115 207 ntBASIC0.21□□□□□ -2.38
ZCCHC3Q9NUD5 RNU6-863P-201ENST00000515989 104 ntBASIC0.21□□□□□ -2.38
ZCCHC3Q9NUD5 MIR4643-201ENST00000577473 78 ntBASIC0.21□□□□□ -2.38
ZCCHC3Q9NUD5 AC011921.3-201ENST00000605540 361 ntBASIC0.21□□□□□ -2.38
ZCCHC3Q9NUD5 NEAT1_2.1-201ENST00000620525 105 ntBASIC0.21□□□□□ -2.38
ZCCHC3Q9NUD5 AC021613.1-201ENST00000623880 111 ntBASIC0.21□□□□□ -2.38
ZCCHC3Q9NUD5 VPS35-212ENST00000640313 141 ntTSL 5 BASIC0.21□□□□□ -2.38
Retrieved 100 of 98,524 protein–RNA pairs in 215.4 ms