Protein–RNA interactions for Protein: Q9H4Z3

PCIF1, Phosphorylated CTD-interacting factor 1, humanhuman

Predictions only

Length 704 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCIF1Q9H4Z3 RNA5SP136-201ENST00000410906 107 ntBASIC1.77□□□□□ -2.13
PCIF1Q9H4Z3 AC022523.2-201ENST00000561045 150 ntBASIC1.77□□□□□ -2.13
PCIF1Q9H4Z3 MIR8055-201ENST00000610739 97 ntBASIC1.77□□□□□ -2.13
PCIF1Q9H4Z3 TFEC-204ENST00000457268 6309 ntTSL 3 BASIC1.77□□□□□ -2.13
PCIF1Q9H4Z3 MTND5P18-201ENST00000445624 1801 ntBASIC1.77□□□□□ -2.13
PCIF1Q9H4Z3 SNORA22.1-201ENST00000362701 134 ntBASIC1.76□□□□□ -2.13
PCIF1Q9H4Z3 Y_RNA.629-201ENST00000411368 105 ntBASIC1.76□□□□□ -2.13
PCIF1Q9H4Z3 AC090844.1-201ENST00000422019 156 ntBASIC1.76□□□□□ -2.13
PCIF1Q9H4Z3 RNA5SP445-201ENST00000515889 115 ntBASIC1.76□□□□□ -2.13
PCIF1Q9H4Z3 RNA5SP458-201ENST00000516188 119 ntBASIC1.76□□□□□ -2.13
PCIF1Q9H4Z3 AC007450.1-201ENST00000536492 188 ntTSL 3 BASIC1.76□□□□□ -2.13
PCIF1Q9H4Z3 AL512310.8-201ENST00000550183 120 ntBASIC1.76□□□□□ -2.13
PCIF1Q9H4Z3 MIR3664-201ENST00000579074 99 ntBASIC1.76□□□□□ -2.13
PCIF1Q9H4Z3 HOTAIRM1_4.1-201ENST00000617934 102 ntBASIC1.76□□□□□ -2.13
PCIF1Q9H4Z3 AC068733.3-201ENST00000632757 269 ntTSL 3 BASIC1.76□□□□□ -2.13
PCIF1Q9H4Z3 RNU1-17P-201ENST00000363022 152 ntBASIC1.75□□□□□ -2.13
PCIF1Q9H4Z3 SNORA25.3-201ENST00000363205 127 ntBASIC1.75□□□□□ -2.13
PCIF1Q9H4Z3 SNORA1.1-201ENST00000364671 133 ntBASIC1.75□□□□□ -2.13
PCIF1Q9H4Z3 Y_RNA.273-201ENST00000364703 102 ntBASIC1.75□□□□□ -2.13
PCIF1Q9H4Z3 RNA5SP363-201ENST00000365072 115 ntBASIC1.75□□□□□ -2.13
PCIF1Q9H4Z3 RNA5SP261-201ENST00000410536 106 ntBASIC1.75□□□□□ -2.13
PCIF1Q9H4Z3 AL365434.1-201ENST00000412362 380 ntTSL 3 BASIC1.75□□□□□ -2.13
PCIF1Q9H4Z3 RPL39P39-201ENST00000455840 151 ntBASIC1.75□□□□□ -2.13
PCIF1Q9H4Z3 RPL30P7-201ENST00000479312 323 ntBASIC1.75□□□□□ -2.13
PCIF1Q9H4Z3 RNU6-1258P-201ENST00000516911 111 ntBASIC1.75□□□□□ -2.13
PCIF1Q9H4Z3 MIR4422-201ENST00000581938 83 ntBASIC1.75□□□□□ -2.13
PCIF1Q9H4Z3 Z97988.1-201ENST00000637697 135 ntBASIC1.75□□□□□ -2.13
PCIF1Q9H4Z3 Y_RNA.171-201ENST00000363760 102 ntBASIC1.74□□□□□ -2.13
PCIF1Q9H4Z3 Y_RNA.346-201ENST00000365385 112 ntBASIC1.74□□□□□ -2.13
PCIF1Q9H4Z3 Y_RNA.430-201ENST00000384081 110 ntBASIC1.74□□□□□ -2.13
PCIF1Q9H4Z3 RNU1-78P-201ENST00000391248 165 ntBASIC1.74□□□□□ -2.13
PCIF1Q9H4Z3 MIR934-201ENST00000401241 83 ntBASIC1.74□□□□□ -2.13
PCIF1Q9H4Z3 MIR1302-7-201ENST00000408841 72 ntBASIC1.74□□□□□ -2.13
PCIF1Q9H4Z3 AL022718.1-201ENST00000412004 84 ntBASIC1.74□□□□□ -2.13
PCIF1Q9H4Z3 AL512326.2-201ENST00000426359 151 ntBASIC1.74□□□□□ -2.13
PCIF1Q9H4Z3 AL603825.1-201ENST00000438481 80 ntBASIC1.74□□□□□ -2.13
PCIF1Q9H4Z3 COX6CP6-201ENST00000490840 228 ntBASIC1.74□□□□□ -2.13
PCIF1Q9H4Z3 MIR3152-201ENST00000579801 74 ntBASIC1.74□□□□□ -2.13
PCIF1Q9H4Z3 AP000942.3-201ENST00000603702 160 ntBASIC1.74□□□□□ -2.13
PCIF1Q9H4Z3 RNA5SP99-201ENST00000364020 114 ntBASIC1.73□□□□□ -2.13
PCIF1Q9H4Z3 RNU6-1104P-201ENST00000384723 104 ntBASIC1.73□□□□□ -2.13
PCIF1Q9H4Z3 MT-TI-201ENST00000387365 69 ntBASIC1.73□□□□□ -2.13
PCIF1Q9H4Z3 AC245517.4-201ENST00000448601 281 ntBASIC1.73□□□□□ -2.13
PCIF1Q9H4Z3 SENP7-201ENST00000314261 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC1.72□□□□□ -2.13
PCIF1Q9H4Z3 CTDSPL2-202ENST00000558373 4255 ntTSL 1 (best) BASIC1.72□□□□□ -2.13
PCIF1Q9H4Z3 RNU6-476P-201ENST00000384726 107 ntBASIC1.72□□□□□ -2.13
PCIF1Q9H4Z3 TRAJ47-201ENST00000390490 57 ntAPPRIS P1 BASIC1.72□□□□□ -2.13
PCIF1Q9H4Z3 RNU6-1064P-201ENST00000410626 104 ntBASIC1.72□□□□□ -2.13
PCIF1Q9H4Z3 RNU6-602P-201ENST00000411155 105 ntBASIC1.72□□□□□ -2.13
PCIF1Q9H4Z3 RPS3AP1-201ENST00000413190 320 ntBASIC1.72□□□□□ -2.13
PCIF1Q9H4Z3 AC004812.1-201ENST00000540773 146 ntBASIC1.72□□□□□ -2.13
PCIF1Q9H4Z3 CYP3A52P-201ENST00000563326 91 ntBASIC1.72□□□□□ -2.13
PCIF1Q9H4Z3 MTND5P34-201ENST00000568888 325 ntBASIC1.72□□□□□ -2.13
PCIF1Q9H4Z3 MIR4255-201ENST00000579351 72 ntBASIC1.72□□□□□ -2.13
PCIF1Q9H4Z3 TP73-AS1.1-201ENST00000611447 161 ntBASIC1.72□□□□□ -2.13
PCIF1Q9H4Z3 NPAT-201ENST00000278612 6117 ntAPPRIS P2 TSL 1 (best) BASIC1.72□□□□□ -2.13
PCIF1Q9H4Z3 RNU6-834P-201ENST00000362367 110 ntBASIC1.71□□□□□ -2.14
PCIF1Q9H4Z3 Y_RNA.198-201ENST00000364013 98 ntBASIC1.71□□□□□ -2.14
PCIF1Q9H4Z3 RNU6-1144P-201ENST00000384247 104 ntBASIC1.71□□□□□ -2.14
PCIF1Q9H4Z3 AL670379.3-201ENST00000605040 251 ntBASIC1.71□□□□□ -2.14
PCIF1Q9H4Z3 MIR8065-201ENST00000620577 100 ntBASIC1.71□□□□□ -2.14
PCIF1Q9H4Z3 AL121890.5-201ENST00000620848 304 ntBASIC1.71□□□□□ -2.14
PCIF1Q9H4Z3 ZNF260-203ENST00000588993 4174 ntAPPRIS P1 TSL 1 (best) BASIC1.7□□□□□ -2.14
PCIF1Q9H4Z3 RNU6-1056P-201ENST00000383996 107 ntBASIC1.7□□□□□ -2.14
PCIF1Q9H4Z3 MIR548A3-201ENST00000385297 97 ntBASIC1.7□□□□□ -2.14
PCIF1Q9H4Z3 MIR1323-201ENST00000408090 73 ntBASIC1.7□□□□□ -2.14
PCIF1Q9H4Z3 Y_RNA.649-201ENST00000459077 103 ntBASIC1.7□□□□□ -2.14
PCIF1Q9H4Z3 RNU7-113P-201ENST00000459273 62 ntBASIC1.7□□□□□ -2.14
PCIF1Q9H4Z3 RNU6-902P-201ENST00000517212 91 ntBASIC1.7□□□□□ -2.14
PCIF1Q9H4Z3 AP003716.2-201ENST00000528260 108 ntBASIC1.7□□□□□ -2.14
PCIF1Q9H4Z3 CEP162-201ENST00000257766 5063 ntTSL 1 (best) BASIC1.7□□□□□ -2.14
PCIF1Q9H4Z3 ZGRF1-203ENST00000445203 6529 ntAPPRIS P1 TSL 5 BASIC1.7□□□□□ -2.14
PCIF1Q9H4Z3 C9orf84-205ENST00000394779 5060 ntAPPRIS ALT2 TSL 2 BASIC1.7□□□□□ -2.14
PCIF1Q9H4Z3 Y_RNA.213-201ENST00000364178 111 ntBASIC1.69□□□□□ -2.14
PCIF1Q9H4Z3 Y_RNA.470-201ENST00000384307 117 ntBASIC1.69□□□□□ -2.14
PCIF1Q9H4Z3 RNU6-429P-201ENST00000384582 108 ntBASIC1.69□□□□□ -2.14
PCIF1Q9H4Z3 Y_RNA.531-201ENST00000384589 121 ntBASIC1.69□□□□□ -2.14
PCIF1Q9H4Z3 MIR1185-1-201ENST00000408598 86 ntBASIC1.69□□□□□ -2.14
PCIF1Q9H4Z3 AC245047.7-201ENST00000440265 293 ntBASIC1.69□□□□□ -2.14
PCIF1Q9H4Z3 AC073127.1-201ENST00000447336 333 ntTSL 3 BASIC1.69□□□□□ -2.14
PCIF1Q9H4Z3 RNU6-893P-201ENST00000458841 100 ntBASIC1.69□□□□□ -2.14
PCIF1Q9H4Z3 AC113410.1-201ENST00000505029 247 ntBASIC1.69□□□□□ -2.14
PCIF1Q9H4Z3 RN7SKP88-201ENST00000516847 250 ntBASIC1.69□□□□□ -2.14
PCIF1Q9H4Z3 PRELID3BP2-201ENST00000605362 201 ntBASIC1.69□□□□□ -2.14
PCIF1Q9H4Z3 BX248123.2-201ENST00000606318 124 ntBASIC1.69□□□□□ -2.14
PCIF1Q9H4Z3 7SK.8-201ENST00000612110 250 ntBASIC1.69□□□□□ -2.14
PCIF1Q9H4Z3 7SK.11-201ENST00000615477 250 ntBASIC1.69□□□□□ -2.14
PCIF1Q9H4Z3 MIR6129-201ENST00000616087 109 ntBASIC1.69□□□□□ -2.14
PCIF1Q9H4Z3 7SK.13-201ENST00000622040 250 ntBASIC1.69□□□□□ -2.14
PCIF1Q9H4Z3 MIR548A1-201ENST00000385041 97 ntBASIC1.68□□□□□ -2.14
PCIF1Q9H4Z3 SNORA17.3-201ENST00000391159 129 ntBASIC1.68□□□□□ -2.14
PCIF1Q9H4Z3 AL135923.1-201ENST00000413066 196 ntTSL 3 BASIC1.68□□□□□ -2.14
PCIF1Q9H4Z3 RPS23P4-201ENST00000487908 423 ntBASIC1.68□□□□□ -2.14
PCIF1Q9H4Z3 AL133373.1-201ENST00000497098 94 ntBASIC1.68□□□□□ -2.14
PCIF1Q9H4Z3 MIR3122-201ENST00000577243 73 ntBASIC1.68□□□□□ -2.14
PCIF1Q9H4Z3 AL645939.4-201ENST00000604495 135 ntBASIC1.68□□□□□ -2.14
PCIF1Q9H4Z3 MIR103A2-201ENST00000362154 78 ntBASIC1.67□□□□□ -2.14
PCIF1Q9H4Z3 RNU1-42P-201ENST00000364033 160 ntBASIC1.67□□□□□ -2.14
PCIF1Q9H4Z3 MIR1304-201ENST00000408243 91 ntBASIC1.67□□□□□ -2.14
PCIF1Q9H4Z3 IGHVII-40-1-201ENST00000517316 58 ntBASIC1.67□□□□□ -2.14
Retrieved 100 of 98,524 protein–RNA pairs in 169.1 ms