Protein–RNA interactions for Protein: P78367

NKX3-2, Homeobox protein Nkx-3.2, humanhuman

Predictions only

Length 333 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-2P78367 RPS23P4-201ENST00000487908 423 ntBASIC2.07□□□□□ -2.08
NKX3-2P78367 RPS29P11-201ENST00000496507 171 ntBASIC2.07□□□□□ -2.08
NKX3-2P78367 AC108729.3-201ENST00000513484 108 ntBASIC2.07□□□□□ -2.08
NKX3-2P78367 Y_RNA.694-201ENST00000516677 117 ntBASIC2.07□□□□□ -2.08
NKX3-2P78367 MIR4791-201ENST00000607666 84 ntBASIC2.07□□□□□ -2.08
NKX3-2P78367 AP001318.4-201ENST00000616637 121 ntBASIC2.07□□□□□ -2.08
NKX3-2P78367 AC084768.2-201ENST00000622736 221 ntBASIC2.07□□□□□ -2.08
NKX3-2P78367 AC008163.1-205ENST00000413944 4649 ntTSL 1 (best) BASIC2.06□□□□□ -2.08
NKX3-2P78367 RNU6-640P-201ENST00000363693 105 ntBASIC2.06□□□□□ -2.08
NKX3-2P78367 RNU2-40P-201ENST00000410833 196 ntBASIC2.06□□□□□ -2.08
NKX3-2P78367 SNORD13-201ENST00000459299 104 ntBASIC2.06□□□□□ -2.08
NKX3-2P78367 RNU6-109P-201ENST00000516364 107 ntBASIC2.06□□□□□ -2.08
NKX3-2P78367 RNU6-184P-201ENST00000516514 107 ntBASIC2.06□□□□□ -2.08
NKX3-2P78367 RNU2-19P-201ENST00000517288 84 ntBASIC2.06□□□□□ -2.08
NKX3-2P78367 AL627230.6-201ENST00000611129 280 ntBASIC2.06□□□□□ -2.08
NKX3-2P78367 AL162726.3-218ENST00000636401 95 ntBASIC2.06□□□□□ -2.08
NKX3-2P78367 LINC01790-201ENST00000447194 2852 ntTSL 2 BASIC2.05□□□□□ -2.08
NKX3-2P78367 RNU6-661P-201ENST00000362409 107 ntBASIC2.05□□□□□ -2.08
NKX3-2P78367 RNA5SP276-201ENST00000362580 94 ntBASIC2.05□□□□□ -2.08
NKX3-2P78367 SNORA70.7-201ENST00000384159 133 ntBASIC2.05□□□□□ -2.08
NKX3-2P78367 Y_RNA.470-201ENST00000384307 117 ntBASIC2.05□□□□□ -2.08
NKX3-2P78367 MIR590-201ENST00000385008 97 ntBASIC2.05□□□□□ -2.08
NKX3-2P78367 RNU6-360P-201ENST00000390944 104 ntBASIC2.05□□□□□ -2.08
NKX3-2P78367 RNU6-917P-201ENST00000516294 104 ntBASIC2.05□□□□□ -2.08
NKX3-2P78367 SNORA25.15-201ENST00000516487 89 ntBASIC2.05□□□□□ -2.08
NKX3-2P78367 RNU7-53P-201ENST00000516705 60 ntBASIC2.05□□□□□ -2.08
NKX3-2P78367 MIR4448-201ENST00000584360 86 ntBASIC2.05□□□□□ -2.08
NKX3-2P78367 Y_RNA.773-201ENST00000607168 90 ntBASIC2.05□□□□□ -2.08
NKX3-2P78367 SNORA22.1-201ENST00000362701 134 ntBASIC2.04□□□□□ -2.08
NKX3-2P78367 Y_RNA.164-201ENST00000363709 102 ntBASIC2.04□□□□□ -2.08
NKX3-2P78367 RNU6-816P-201ENST00000390914 107 ntBASIC2.04□□□□□ -2.08
NKX3-2P78367 RNU6-1268P-201ENST00000391214 107 ntBASIC2.04□□□□□ -2.08
NKX3-2P78367 RNU6-1239P-201ENST00000391310 107 ntBASIC2.04□□□□□ -2.08
NKX3-2P78367 CGGBP1-202ENST00000398392 5298 ntAPPRIS P1 BASIC2.04□□□□□ -2.08
NKX3-2P78367 BTF3P4-201ENST00000418852 495 ntBASIC2.04□□□□□ -2.08
NKX3-2P78367 HMGN2P19-201ENST00000425149 265 ntBASIC2.04□□□□□ -2.08
NKX3-2P78367 HMGN1P33-201ENST00000432945 451 ntBASIC2.04□□□□□ -2.08
NKX3-2P78367 RPL23AP6-201ENST00000446637 472 ntBASIC2.04□□□□□ -2.08
NKX3-2P78367 RNU7-113P-201ENST00000459273 62 ntBASIC2.04□□□□□ -2.08
NKX3-2P78367 RNA5SP57-201ENST00000459463 123 ntBASIC2.04□□□□□ -2.08
NKX3-2P78367 AC007370.2-201ENST00000506899 2694 ntTSL 5 BASIC2.04□□□□□ -2.08
NKX3-2P78367 SNORA74.3-201ENST00000517108 154 ntBASIC2.04□□□□□ -2.08
NKX3-2P78367 MIR3618-201ENST00000580330 88 ntBASIC2.04□□□□□ -2.08
NKX3-2P78367 AL020996.3-201ENST00000606617 222 ntBASIC2.04□□□□□ -2.08
NKX3-2P78367 MIR6717-201ENST00000622747 73 ntBASIC2.04□□□□□ -2.08
NKX3-2P78367 MIR1255B1-201ENST00000636325 63 ntBASIC2.04□□□□□ -2.08
NKX3-2P78367 MIR6841-201ENST00000637129 72 ntBASIC2.04□□□□□ -2.08
NKX3-2P78367 OR2L2-202ENST00000641771 4300 ntAPPRIS P1 BASIC2.04□□□□□ -2.08
NKX3-2P78367 GS1-279B7.1-204ENST00000641809 378 ntBASIC2.04□□□□□ -2.08
NKX3-2P78367 CALCRL-201ENST00000392370 5155 ntAPPRIS P1 TSL 1 (best) BASIC2.04□□□□□ -2.08
NKX3-2P78367 MIR378A-201ENST00000362177 66 ntBASIC2.03□□□□□ -2.08
NKX3-2P78367 Y_RNA.226-201ENST00000364337 114 ntBASIC2.03□□□□□ -2.08
NKX3-2P78367 RNA5SP160-201ENST00000364866 120 ntBASIC2.03□□□□□ -2.08
NKX3-2P78367 MIR194-1-201ENST00000384892 85 ntBASIC2.03□□□□□ -2.08
NKX3-2P78367 RNA5SP338-201ENST00000410495 85 ntBASIC2.03□□□□□ -2.08
NKX3-2P78367 AP1B1P2-201ENST00000416196 106 ntBASIC2.03□□□□□ -2.08
NKX3-2P78367 RPL39P25-201ENST00000449384 154 ntBASIC2.03□□□□□ -2.08
NKX3-2P78367 RNU7-73P-201ENST00000458743 63 ntBASIC2.03□□□□□ -2.08
NKX3-2P78367 AC113410.1-201ENST00000505029 247 ntBASIC2.03□□□□□ -2.08
NKX3-2P78367 IGHVII-40-1-201ENST00000517316 58 ntBASIC2.03□□□□□ -2.08
NKX3-2P78367 AC141557.1-201ENST00000540982 400 ntBASIC2.03□□□□□ -2.08
NKX3-2P78367 MIR3152-201ENST00000579801 74 ntBASIC2.03□□□□□ -2.08
NKX3-2P78367 RNU6-1113P-201ENST00000384348 107 ntBASIC2.02□□□□□ -2.09
NKX3-2P78367 Y_RNA.537-201ENST00000384626 109 ntBASIC2.02□□□□□ -2.09
NKX3-2P78367 RNU6-321P-201ENST00000410912 106 ntBASIC2.02□□□□□ -2.09
NKX3-2P78367 RNU6-717P-201ENST00000459076 104 ntBASIC2.02□□□□□ -2.09
NKX3-2P78367 MIR1270-201ENST00000459320 83 ntBASIC2.02□□□□□ -2.09
NKX3-2P78367 AL035078.1-202ENST00000531627 413 ntTSL 2 BASIC2.02□□□□□ -2.09
NKX3-2P78367 DNAJC19P9-201ENST00000555084 351 ntBASIC2.02□□□□□ -2.09
NKX3-2P78367 AC006254.2-201ENST00000603259 279 ntBASIC2.02□□□□□ -2.09
NKX3-2P78367 SLC8A1-AS1-230ENST00000627538 212 ntTSL 5 BASIC2.02□□□□□ -2.09
NKX3-2P78367 SCN7A-201ENST00000409855 7183 ntAPPRIS P1 TSL 1 (best) BASIC2.01□□□□□ -2.09
NKX3-2P78367 TBL1XR1-208ENST00000430069 7948 ntAPPRIS P1 TSL 1 (best) BASIC2.01□□□□□ -2.09
NKX3-2P78367 RNU6-1123P-201ENST00000362347 106 ntBASIC2.01□□□□□ -2.09
NKX3-2P78367 RNA5SP138-201ENST00000365098 114 ntBASIC2.01□□□□□ -2.09
NKX3-2P78367 RNU6-439P-201ENST00000384188 106 ntBASIC2.01□□□□□ -2.09
NKX3-2P78367 RNU4-69P-201ENST00000410677 143 ntBASIC2.01□□□□□ -2.09
NKX3-2P78367 RNA5SP33-201ENST00000516687 98 ntBASIC2.01□□□□□ -2.09
NKX3-2P78367 MIR548AE2-201ENST00000583456 67 ntBASIC2.01□□□□□ -2.09
NKX3-2P78367 AL096840.1-201ENST00000603287 93 ntBASIC2.01□□□□□ -2.09
NKX3-2P78367 SNORD115-2-201ENST00000362842 82 ntBASIC2□□□□□ -2.09
NKX3-2P78367 SNORD115-19-201ENST00000363098 82 ntBASIC2□□□□□ -2.09
NKX3-2P78367 SNORD115-18-201ENST00000363293 82 ntBASIC2□□□□□ -2.09
NKX3-2P78367 SNORD115-17-201ENST00000364612 82 ntBASIC2□□□□□ -2.09
NKX3-2P78367 SNORD115-20-201ENST00000365099 82 ntBASIC2□□□□□ -2.09
NKX3-2P78367 RNU4-62P-201ENST00000410125 130 ntBASIC2□□□□□ -2.09
NKX3-2P78367 AC004965.1-201ENST00000413033 213 ntBASIC2□□□□□ -2.09
NKX3-2P78367 RNU6-904P-201ENST00000516206 101 ntBASIC2□□□□□ -2.09
NKX3-2P78367 MIR4764-201ENST00000580680 88 ntBASIC2□□□□□ -2.09
NKX3-2P78367 MIR4781-201ENST00000585250 76 ntBASIC2□□□□□ -2.09
NKX3-2P78367 BRDT-206ENST00000402388 3125 ntAPPRIS P3 TSL 1 (best) BASIC2□□□□□ -2.09
NKX3-2P78367 Y_RNA.369-201ENST00000365568 117 ntBASIC1.99□□□□□ -2.09
NKX3-2P78367 Y_RNA.430-201ENST00000384081 110 ntBASIC1.99□□□□□ -2.09
NKX3-2P78367 TRAJ11-201ENST00000390526 60 ntAPPRIS P1 BASIC1.99□□□□□ -2.09
NKX3-2P78367 MIR1912-201ENST00000410389 80 ntBASIC1.99□□□□□ -2.09
NKX3-2P78367 ATP6V0E1P1-201ENST00000412537 226 ntBASIC1.99□□□□□ -2.09
NKX3-2P78367 RNU6-893P-201ENST00000458841 100 ntBASIC1.99□□□□□ -2.09
NKX3-2P78367 SNORA40.13-201ENST00000516379 120 ntBASIC1.99□□□□□ -2.09
NKX3-2P78367 AC099850.3-201ENST00000577678 321 ntTSL 3 BASIC1.99□□□□□ -2.09
NKX3-2P78367 MIR8055-201ENST00000610739 97 ntBASIC1.99□□□□□ -2.09
Retrieved 100 of 98,524 protein–RNA pairs in 109.7 ms