Protein–RNA interactions for Protein: P53804

TTC3, E3 ubiquitin-protein ligase TTC3, humanhuman

Predictions only

Length 2,025 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC3P53804 SNORA31.4-201ENST00000516049 129 ntBASIC1.56□□□□□ -2.16
TTC3P53804 RNU2-35P-201ENST00000516446 142 ntBASIC1.56□□□□□ -2.16
TTC3P53804 U1.36-201ENST00000620684 176 ntBASIC1.56□□□□□ -2.16
TTC3P53804 AC008555.8-201ENST00000623602 2168 ntBASIC1.56□□□□□ -2.16
TTC3P53804 CGGBP1-202ENST00000398392 5298 ntAPPRIS P1 BASIC1.56□□□□□ -2.16
TTC3P53804 MIR96-201ENST00000362288 78 ntBASIC1.56□□□□□ -2.16
TTC3P53804 RNU6-755P-201ENST00000364400 103 ntBASIC1.56□□□□□ -2.16
TTC3P53804 Y_RNA.241-201ENST00000364470 117 ntBASIC1.56□□□□□ -2.16
TTC3P53804 AC055731.1-201ENST00000474387 401 ntBASIC1.56□□□□□ -2.16
TTC3P53804 SNORA31.24-201ENST00000517232 57 ntBASIC1.56□□□□□ -2.16
TTC3P53804 IGLVVI-22-1-201ENST00000521183 211 ntBASIC1.56□□□□□ -2.16
TTC3P53804 AC007012.1-201ENST00000567192 175 ntBASIC1.56□□□□□ -2.16
TTC3P53804 MIR4764-201ENST00000580680 88 ntBASIC1.56□□□□□ -2.16
TTC3P53804 AL121890.5-201ENST00000620848 304 ntBASIC1.56□□□□□ -2.16
TTC3P53804 UGP2-230ENST00000626380 276 ntTSL 5 BASIC1.56□□□□□ -2.16
TTC3P53804 RNU1-133P-201ENST00000364867 167 ntBASIC1.55□□□□□ -2.16
TTC3P53804 Y_RNA.355-201ENST00000365462 98 ntBASIC1.55□□□□□ -2.16
TTC3P53804 RNU6-106P-201ENST00000384405 107 ntBASIC1.55□□□□□ -2.16
TTC3P53804 MIR489-201ENST00000384923 84 ntBASIC1.55□□□□□ -2.16
TTC3P53804 RNA5SP89-201ENST00000410300 108 ntBASIC1.55□□□□□ -2.16
TTC3P53804 RPS3AP1-201ENST00000413190 320 ntBASIC1.55□□□□□ -2.16
TTC3P53804 AL356379.1-201ENST00000414105 126 ntBASIC1.55□□□□□ -2.16
TTC3P53804 CYCTP-201ENST00000504253 315 ntBASIC1.55□□□□□ -2.16
TTC3P53804 RNU4ATAC11P-201ENST00000515939 126 ntBASIC1.55□□□□□ -2.16
TTC3P53804 RNU6-958P-201ENST00000516995 106 ntBASIC1.55□□□□□ -2.16
TTC3P53804 AC022254.1-201ENST00000567857 235 ntBASIC1.55□□□□□ -2.16
TTC3P53804 CALCRL-201ENST00000392370 5155 ntAPPRIS P1 TSL 1 (best) BASIC1.54□□□□□ -2.16
TTC3P53804 RNU6-1298P-201ENST00000362456 101 ntBASIC1.54□□□□□ -2.16
TTC3P53804 Y_RNA.198-201ENST00000364013 98 ntBASIC1.54□□□□□ -2.16
TTC3P53804 Y_RNA.344-201ENST00000365381 112 ntBASIC1.54□□□□□ -2.16
TTC3P53804 Y_RNA.531-201ENST00000384589 121 ntBASIC1.54□□□□□ -2.16
TTC3P53804 RN7SL274P-201ENST00000492268 272 ntBASIC1.54□□□□□ -2.16
TTC3P53804 SLC8A1-AS1-230ENST00000627538 212 ntTSL 5 BASIC1.54□□□□□ -2.16
TTC3P53804 AL162726.3-218ENST00000636401 95 ntBASIC1.54□□□□□ -2.16
TTC3P53804 MIR376A2-201ENST00000636782 80 ntBASIC1.54□□□□□ -2.16
TTC3P53804 ICE2P2-201ENST00000483823 2787 ntBASIC1.54□□□□□ -2.16
TTC3P53804 Y_RNA.362-201ENST00000365518 110 ntBASIC1.54□□□□□ -2.16
TTC3P53804 RNU6-296P-201ENST00000384608 107 ntBASIC1.54□□□□□ -2.16
TTC3P53804 AL022718.1-201ENST00000412004 84 ntBASIC1.54□□□□□ -2.16
TTC3P53804 POLR2J4-204ENST00000418424 324 ntBASIC1.54□□□□□ -2.16
TTC3P53804 AL158147.1-201ENST00000443970 75 ntBASIC1.54□□□□□ -2.16
TTC3P53804 RNU2-13P-201ENST00000515909 113 ntBASIC1.54□□□□□ -2.16
TTC3P53804 SNORD36C-201ENST00000516733 66 ntBASIC1.54□□□□□ -2.16
TTC3P53804 RNU1-92P-201ENST00000517017 135 ntBASIC1.54□□□□□ -2.16
TTC3P53804 AL035078.1-202ENST00000531627 413 ntTSL 2 BASIC1.54□□□□□ -2.16
TTC3P53804 AL096840.1-201ENST00000603287 93 ntBASIC1.54□□□□□ -2.16
TTC3P53804 MIR4791-201ENST00000607666 84 ntBASIC1.54□□□□□ -2.16
TTC3P53804 MIR8055-201ENST00000610739 97 ntBASIC1.54□□□□□ -2.16
TTC3P53804 AL391516.1-201ENST00000554380 2449 ntBASIC1.53□□□□□ -2.16
TTC3P53804 RNY4P6-201ENST00000363667 96 ntBASIC1.53□□□□□ -2.16
TTC3P53804 Y_RNA.213-201ENST00000364178 111 ntBASIC1.53□□□□□ -2.16
TTC3P53804 RNY4P30-201ENST00000410216 95 ntBASIC1.53□□□□□ -2.16
TTC3P53804 MIR1912-201ENST00000410389 80 ntBASIC1.53□□□□□ -2.16
TTC3P53804 RNU6-893P-201ENST00000458841 100 ntBASIC1.53□□□□□ -2.16
TTC3P53804 RNU7-96P-201ENST00000459535 64 ntBASIC1.53□□□□□ -2.16
TTC3P53804 RNU7-43P-201ENST00000516554 64 ntBASIC1.53□□□□□ -2.16
TTC3P53804 RNA5SP481-201ENST00000516814 122 ntBASIC1.53□□□□□ -2.16
TTC3P53804 RNA5SP102-201ENST00000516865 106 ntBASIC1.53□□□□□ -2.16
TTC3P53804 MIR4452-201ENST00000583004 71 ntBASIC1.53□□□□□ -2.16
TTC3P53804 HSPE1P19-201ENST00000603327 295 ntBASIC1.53□□□□□ -2.16
TTC3P53804 RNU6-147P-201ENST00000383983 107 ntBASIC1.52□□□□□ -2.17
TTC3P53804 MIR653-201ENST00000385279 96 ntBASIC1.52□□□□□ -2.17
TTC3P53804 snoU13.16-201ENST00000459350 104 ntBASIC1.52□□□□□ -2.17
TTC3P53804 RPL39P34-201ENST00000477141 156 ntBASIC1.52□□□□□ -2.17
TTC3P53804 RNU4-16P-201ENST00000364737 141 ntBASIC1.52□□□□□ -2.17
TTC3P53804 Y_RNA.360-201ENST00000365512 102 ntBASIC1.52□□□□□ -2.17
TTC3P53804 SNORA70.7-201ENST00000384159 133 ntBASIC1.52□□□□□ -2.17
TTC3P53804 Y_RNA.454-201ENST00000384224 113 ntBASIC1.52□□□□□ -2.17
TTC3P53804 SNORA48.1-201ENST00000390879 135 ntBASIC1.52□□□□□ -2.17
TTC3P53804 RPL39P25-201ENST00000449384 154 ntBASIC1.52□□□□□ -2.17
TTC3P53804 RNU7-67P-201ENST00000459003 62 ntBASIC1.52□□□□□ -2.17
TTC3P53804 RNA5SP445-201ENST00000515889 115 ntBASIC1.52□□□□□ -2.17
TTC3P53804 SNORD3E-202ENST00000627253 216 ntBASIC1.52□□□□□ -2.17
TTC3P53804 AL589743.1-201ENST00000551932 2712 ntBASIC1.52□□□□□ -2.17
TTC3P53804 RNU6-414P-201ENST00000363705 104 ntBASIC1.51□□□□□ -2.17
TTC3P53804 Y_RNA.507-201ENST00000384500 99 ntBASIC1.51□□□□□ -2.17
TTC3P53804 RNU6-880P-201ENST00000384526 107 ntBASIC1.51□□□□□ -2.17
TTC3P53804 SNORD28B-201ENST00000390993 75 ntBASIC1.51□□□□□ -2.17
TTC3P53804 RPS29P29-201ENST00000456396 171 ntBASIC1.51□□□□□ -2.17
TTC3P53804 RNU7-113P-201ENST00000459273 62 ntBASIC1.51□□□□□ -2.17
TTC3P53804 AC099513.1-201ENST00000490423 301 ntBASIC1.51□□□□□ -2.17
TTC3P53804 ATP11C-202ENST00000361648 6010 ntAPPRIS ALT2 TSL 1 (best) BASIC1.51□□□□□ -2.17
TTC3P53804 Y_RNA.43-201ENST00000362670 111 ntBASIC1.5□□□□□ -2.17
TTC3P53804 Y_RNA.440-201ENST00000384120 114 ntBASIC1.5□□□□□ -2.17
TTC3P53804 MIR520C-201ENST00000385005 87 ntBASIC1.5□□□□□ -2.17
TTC3P53804 TRAJ11-201ENST00000390526 60 ntAPPRIS P1 BASIC1.5□□□□□ -2.17
TTC3P53804 SNORD111.1-201ENST00000516421 86 ntBASIC1.5□□□□□ -2.17
TTC3P53804 MIR3198-2-201ENST00000577868 80 ntBASIC1.5□□□□□ -2.17
TTC3P53804 MIR4713-201ENST00000582691 75 ntBASIC1.5□□□□□ -2.17
TTC3P53804 MUC15-203ENST00000455601 3156 ntAPPRIS P1 TSL 2 BASIC1.5□□□□□ -2.17
TTC3P53804 Y_RNA.298-201ENST00000364960 107 ntBASIC1.5□□□□□ -2.17
TTC3P53804 RNU6-1104P-201ENST00000384723 104 ntBASIC1.5□□□□□ -2.17
TTC3P53804 MIR3613-201ENST00000579844 87 ntBASIC1.5□□□□□ -2.17
TTC3P53804 MIR3660-201ENST00000584845 100 ntBASIC1.5□□□□□ -2.17
TTC3P53804 MGAT4C-209ENST00000611864 25116 ntAPPRIS P1 TSL 5 BASIC1.5□□□□□ -2.17
TTC3P53804 MIR450A1-201ENST00000362262 91 ntBASIC1.49□□□□□ -2.17
TTC3P53804 RNA5SP363-201ENST00000365072 115 ntBASIC1.49□□□□□ -2.17
TTC3P53804 Y_RNA.549-201ENST00000384657 102 ntBASIC1.49□□□□□ -2.17
TTC3P53804 RNU7-164P-201ENST00000459221 62 ntBASIC1.49□□□□□ -2.17
TTC3P53804 AC131956.1-201ENST00000506420 258 ntTSL 2 BASIC1.49□□□□□ -2.17
Retrieved 100 of 98,524 protein–RNA pairs in 122.3 ms