Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 MIR1261-201ENST00000408659 82 ntBASIC2.17□□□□□ -2.06
LIG3P49916 ATP6V0E1P3-201ENST00000420036 246 ntBASIC2.17□□□□□ -2.06
LIG3P49916 MIR548AO-201ENST00000579992 96 ntBASIC2.17□□□□□ -2.06
LIG3P49916 GHRLOS.1-201ENST00000610995 70 ntBASIC2.17□□□□□ -2.06
LIG3P49916 MIR8063-201ENST00000621930 81 ntBASIC2.17□□□□□ -2.06
LIG3P49916 CGGBP1-202ENST00000398392 5298 ntAPPRIS P1 BASIC2.16□□□□□ -2.06
LIG3P49916 Y_RNA.328-201ENST00000365208 113 ntBASIC2.16□□□□□ -2.06
LIG3P49916 Y_RNA.507-201ENST00000384500 99 ntBASIC2.16□□□□□ -2.06
LIG3P49916 RNU6-816P-201ENST00000390914 107 ntBASIC2.16□□□□□ -2.06
LIG3P49916 RNU6-1268P-201ENST00000391214 107 ntBASIC2.16□□□□□ -2.06
LIG3P49916 RNU6-1239P-201ENST00000391310 107 ntBASIC2.16□□□□□ -2.06
LIG3P49916 RNA5SP89-201ENST00000410300 108 ntBASIC2.16□□□□□ -2.06
LIG3P49916 RNU2-40P-201ENST00000410833 196 ntBASIC2.16□□□□□ -2.06
LIG3P49916 RNU6-250P-201ENST00000516958 103 ntBASIC2.16□□□□□ -2.06
LIG3P49916 MIR3618-201ENST00000580330 88 ntBASIC2.16□□□□□ -2.06
LIG3P49916 AC103810.8-201ENST00000607347 118 ntBASIC2.16□□□□□ -2.06
LIG3P49916 AC034238.1-213ENST00000611148 150 ntTSL 5 BASIC2.16□□□□□ -2.06
LIG3P49916 SNORA67.3-201ENST00000384366 140 ntBASIC2.15□□□□□ -2.07
LIG3P49916 MIR30A-201ENST00000385092 71 ntBASIC2.15□□□□□ -2.07
LIG3P49916 snoU13.9-201ENST00000458927 103 ntBASIC2.15□□□□□ -2.07
LIG3P49916 AL627230.6-201ENST00000611129 280 ntBASIC2.15□□□□□ -2.07
LIG3P49916 MIR6715A-201ENST00000615929 79 ntBASIC2.15□□□□□ -2.07
LIG3P49916 AL359851.1-201ENST00000569460 4997 ntBASIC2.14□□□□□ -2.07
LIG3P49916 SCN7A-201ENST00000409855 7183 ntAPPRIS P1 TSL 1 (best) BASIC2.14□□□□□ -2.07
LIG3P49916 TRAJ49-201ENST00000390488 56 ntAPPRIS P1 BASIC2.14□□□□□ -2.07
LIG3P49916 SNORA48.3-201ENST00000391081 134 ntBASIC2.14□□□□□ -2.07
LIG3P49916 SUMO2P12-201ENST00000405924 140 ntBASIC2.14□□□□□ -2.07
LIG3P49916 RNU6-602P-201ENST00000411155 105 ntBASIC2.14□□□□□ -2.07
LIG3P49916 RNA5SP233-201ENST00000459153 113 ntBASIC2.14□□□□□ -2.07
LIG3P49916 RNU6ATAC12P-201ENST00000516542 115 ntBASIC2.14□□□□□ -2.07
LIG3P49916 MIR8065-201ENST00000620577 100 ntBASIC2.14□□□□□ -2.07
LIG3P49916 OR5M1-202ENST00000641076 4302 ntAPPRIS P1 BASIC2.13□□□□□ -2.07
LIG3P49916 XIRP2-201ENST00000295237 5246 ntTSL 2 BASIC2.13□□□□□ -2.07
LIG3P49916 SNORA32-201ENST00000384072 121 ntBASIC2.13□□□□□ -2.07
LIG3P49916 AC245047.7-201ENST00000440265 293 ntBASIC2.13□□□□□ -2.07
LIG3P49916 HSPE1P24-201ENST00000450782 238 ntBASIC2.13□□□□□ -2.07
LIG3P49916 AC009474.2-201ENST00000451383 136 ntBASIC2.13□□□□□ -2.07
LIG3P49916 HMGN2P23-201ENST00000456759 269 ntBASIC2.13□□□□□ -2.07
LIG3P49916 AC012493.3-201ENST00000604494 112 ntBASIC2.13□□□□□ -2.07
LIG3P49916 MIR219B-201ENST00000637023 88 ntBASIC2.13□□□□□ -2.07
LIG3P49916 PYGO1-201ENST00000302000 8488 ntTSL 1 (best) BASIC2.13□□□□□ -2.07
LIG3P49916 PTPRQ-208ENST00000614701 8289 ntAPPRIS P1 TSL 5 BASIC2.12□□□□□ -2.07
LIG3P49916 SNORD38B-201ENST00000384690 67 ntBASIC2.12□□□□□ -2.07
LIG3P49916 RPL39P39-201ENST00000455840 151 ntBASIC2.12□□□□□ -2.07
LIG3P49916 CERS6-AS1-202ENST00000594898 499 ntTSL 5 BASIC2.12□□□□□ -2.07
LIG3P49916 Y_RNA.773-201ENST00000607168 90 ntBASIC2.12□□□□□ -2.07
LIG3P49916 SNORD38B-202ENST00000625943 69 ntBASIC2.12□□□□□ -2.07
LIG3P49916 Y_RNA.155-201ENST00000363632 101 ntBASIC2.11□□□□□ -2.07
LIG3P49916 TRAJ11-201ENST00000390526 60 ntAPPRIS P1 BASIC2.11□□□□□ -2.07
LIG3P49916 ATP6V0E1P1-201ENST00000412537 226 ntBASIC2.11□□□□□ -2.07
LIG3P49916 AC005908.1-201ENST00000468701 347 ntBASIC2.11□□□□□ -2.07
LIG3P49916 RNU6-537P-201ENST00000517277 103 ntBASIC2.11□□□□□ -2.07
LIG3P49916 MIR3192-201ENST00000584920 77 ntBASIC2.11□□□□□ -2.07
LIG3P49916 AL096861.1-201ENST00000610899 123 ntBASIC2.11□□□□□ -2.07
LIG3P49916 MIR1255B1-201ENST00000636325 63 ntBASIC2.11□□□□□ -2.07
LIG3P49916 SNORD33-201ENST00000362761 85 ntBASIC2.1□□□□□ -2.07
LIG3P49916 RNU6-363P-201ENST00000362895 105 ntBASIC2.1□□□□□ -2.07
LIG3P49916 Y_RNA.78-201ENST00000362970 110 ntBASIC2.1□□□□□ -2.07
LIG3P49916 RNU4-67P-201ENST00000364569 141 ntBASIC2.1□□□□□ -2.07
LIG3P49916 RNU6-616P-201ENST00000384353 107 ntBASIC2.1□□□□□ -2.07
LIG3P49916 SNORA18-201ENST00000384416 132 ntBASIC2.1□□□□□ -2.07
LIG3P49916 HMGN2P19-201ENST00000425149 265 ntBASIC2.1□□□□□ -2.07
LIG3P49916 Y_RNA.677-201ENST00000516401 85 ntBASIC2.1□□□□□ -2.07
LIG3P49916 AC141557.1-201ENST00000540982 400 ntBASIC2.1□□□□□ -2.07
LIG3P49916 FAM71BP1-201ENST00000604431 523 ntBASIC2.1□□□□□ -2.07
LIG3P49916 hsa-mir-3158-1.1-201ENST00000637571 81 ntBASIC2.1□□□□□ -2.07
LIG3P49916 MIR302D-201ENST00000362275 68 ntBASIC2.09□□□□□ -2.07
LIG3P49916 RNU6-409P-201ENST00000384114 104 ntBASIC2.09□□□□□ -2.07
LIG3P49916 RNU6-342P-201ENST00000384521 104 ntBASIC2.09□□□□□ -2.07
LIG3P49916 Y_RNA.544-201ENST00000384650 113 ntBASIC2.09□□□□□ -2.07
LIG3P49916 RNA5SP489-201ENST00000410986 109 ntBASIC2.09□□□□□ -2.07
LIG3P49916 AC090844.1-201ENST00000422019 156 ntBASIC2.09□□□□□ -2.07
LIG3P49916 MIR1270-201ENST00000459320 83 ntBASIC2.09□□□□□ -2.07
LIG3P49916 snoU13.15-201ENST00000459407 104 ntBASIC2.09□□□□□ -2.07
LIG3P49916 AC079140.2-201ENST00000506193 142 ntBASIC2.09□□□□□ -2.07
LIG3P49916 RNU6-947P-201ENST00000516264 106 ntBASIC2.09□□□□□ -2.07
LIG3P49916 NEDD1-204ENST00000457368 3162 ntTSL 2 BASIC2.08□□□□□ -2.08
LIG3P49916 DYNC2H1-203ENST00000398093 12945 ntAPPRIS P3 TSL 5 BASIC2.08□□□□□ -2.08
LIG3P49916 RNU6-1065P-201ENST00000384513 106 ntBASIC2.08□□□□□ -2.08
LIG3P49916 RNU6-733P-201ENST00000410759 104 ntBASIC2.08□□□□□ -2.08
LIG3P49916 snoU13.26-201ENST00000459452 105 ntBASIC2.08□□□□□ -2.08
LIG3P49916 RNA5SP170-201ENST00000517150 101 ntBASIC2.08□□□□□ -2.08
LIG3P49916 AC019176.1-201ENST00000518519 225 ntBASIC2.08□□□□□ -2.08
LIG3P49916 MIR3198-2-201ENST00000577868 80 ntBASIC2.08□□□□□ -2.08
LIG3P49916 RNU6-1298P-201ENST00000362456 101 ntBASIC2.07□□□□□ -2.08
LIG3P49916 SNORD114-1-201ENST00000362705 72 ntBASIC2.07□□□□□ -2.08
LIG3P49916 RNU4-36P-201ENST00000364294 144 ntBASIC2.07□□□□□ -2.08
LIG3P49916 SNORD1A-201ENST00000364968 72 ntBASIC2.07□□□□□ -2.08
LIG3P49916 AC019129.1-201ENST00000403786 261 ntBASIC2.07□□□□□ -2.08
LIG3P49916 TTTY16-201ENST00000437686 192 ntTSL 1 (best) BASIC2.07□□□□□ -2.08
LIG3P49916 RPL23AP42-201ENST00000471152 471 ntBASIC2.07□□□□□ -2.08
LIG3P49916 Y_RNA.694-201ENST00000516677 117 ntBASIC2.07□□□□□ -2.08
LIG3P49916 RNU7-35P-201ENST00000517174 62 ntBASIC2.07□□□□□ -2.08
LIG3P49916 RPL30P7-201ENST00000479312 323 ntBASIC2.06□□□□□ -2.08
LIG3P49916 RNU6-904P-201ENST00000516206 101 ntBASIC2.06□□□□□ -2.08
LIG3P49916 MIR3937-201ENST00000580135 106 ntBASIC2.06□□□□□ -2.08
LIG3P49916 AL096840.1-201ENST00000603287 93 ntBASIC2.06□□□□□ -2.08
LIG3P49916 Y_RNA.783-201ENST00000613546 102 ntBASIC2.06□□□□□ -2.08
LIG3P49916 Y_RNA.818-201ENST00000618813 71 ntBASIC2.06□□□□□ -2.08
LIG3P49916 AC008163.1-205ENST00000413944 4649 ntTSL 1 (best) BASIC2.06□□□□□ -2.08
Retrieved 100 of 98,524 protein–RNA pairs in 113.2 ms