Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 MIR222-201ENST00000384992 110 ntBASIC1.06□□□□□ -2.24
HOXA1P49639 MIR618-201ENST00000385287 98 ntBASIC1.06□□□□□ -2.24
HOXA1P49639 SNORD79.1-201ENST00000516069 84 ntBASIC1.06□□□□□ -2.24
HOXA1P49639 SNORA70.22-201ENST00000517160 124 ntBASIC1.06□□□□□ -2.24
HOXA1P49639 AL645939.4-201ENST00000604495 135 ntBASIC1.06□□□□□ -2.24
HOXA1P49639 AC011603.4-201ENST00000611325 277 ntBASIC1.06□□□□□ -2.24
HOXA1P49639 AC091895.1-201ENST00000624494 256 ntBASIC1.06□□□□□ -2.24
HOXA1P49639 Z97988.1-201ENST00000637697 135 ntBASIC1.06□□□□□ -2.24
HOXA1P49639 IL6ST-203ENST00000381287 8667 ntTSL 5 BASIC1.05□□□□□ -2.24
HOXA1P49639 AC008163.1-202ENST00000636004 2889 ntBASIC1.05□□□□□ -2.24
HOXA1P49639 Y_RNA.171-201ENST00000363760 102 ntBASIC1.05□□□□□ -2.24
HOXA1P49639 SNORA25.8-201ENST00000364831 128 ntBASIC1.05□□□□□ -2.24
HOXA1P49639 MIR1285-1-201ENST00000408593 84 ntBASIC1.05□□□□□ -2.24
HOXA1P49639 MTATP6P21-201ENST00000440681 189 ntBASIC1.05□□□□□ -2.24
HOXA1P49639 snoU13.21-201ENST00000459368 105 ntBASIC1.05□□□□□ -2.24
HOXA1P49639 OR2A41P-201ENST00000473586 105 ntBASIC1.05□□□□□ -2.24
HOXA1P49639 RNU6-971P-201ENST00000516920 106 ntBASIC1.05□□□□□ -2.24
HOXA1P49639 IGKV1-22-201ENST00000524313 326 ntBASIC1.05□□□□□ -2.24
HOXA1P49639 AC004148.1-201ENST00000571506 398 ntTSL 5 BASIC1.05□□□□□ -2.24
HOXA1P49639 MIR3121-201ENST00000579680 77 ntBASIC1.05□□□□□ -2.24
HOXA1P49639 MIR4524B-201ENST00000581569 115 ntBASIC1.05□□□□□ -2.24
HOXA1P49639 uc_338.6-201ENST00000613544 171 ntBASIC1.05□□□□□ -2.24
HOXA1P49639 HS1BP3-208ENST00000631166 78 ntTSL 5 BASIC1.05□□□□□ -2.24
HOXA1P49639 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC1.05□□□□□ -2.24
HOXA1P49639 C9orf84-201ENST00000318737 4661 ntAPPRIS P3 TSL 1 (best) BASIC1.04□□□□□ -2.24
HOXA1P49639 CCDC68-202ENST00000432185 4014 ntAPPRIS P1 TSL 1 (best) BASIC1.04□□□□□ -2.24
HOXA1P49639 SNORA22.1-201ENST00000362701 134 ntBASIC1.04□□□□□ -2.24
HOXA1P49639 RNU1-17P-201ENST00000363022 152 ntBASIC1.04□□□□□ -2.24
HOXA1P49639 Y_RNA.114-201ENST00000363265 113 ntBASIC1.04□□□□□ -2.24
HOXA1P49639 RNU6-396P-201ENST00000365369 105 ntBASIC1.04□□□□□ -2.24
HOXA1P49639 SNORA25-201ENST00000384384 134 ntBASIC1.04□□□□□ -2.24
HOXA1P49639 Y_RNA.525-201ENST00000384570 113 ntBASIC1.04□□□□□ -2.24
HOXA1P49639 Y_RNA.586-201ENST00000391146 98 ntBASIC1.04□□□□□ -2.24
HOXA1P49639 POLR2J4-204ENST00000418424 324 ntBASIC1.04□□□□□ -2.24
HOXA1P49639 AC015818.7-201ENST00000428754 109 ntBASIC1.04□□□□□ -2.24
HOXA1P49639 AC087499.7-201ENST00000441958 109 ntBASIC1.04□□□□□ -2.24
HOXA1P49639 RNU1-123P-201ENST00000458950 160 ntBASIC1.04□□□□□ -2.24
HOXA1P49639 RNU6-1211P-201ENST00000459179 105 ntBASIC1.04□□□□□ -2.24
HOXA1P49639 LINC02514-201ENST00000509058 498 ntTSL 3 BASIC1.04□□□□□ -2.24
HOXA1P49639 RNU2-35P-201ENST00000516446 142 ntBASIC1.04□□□□□ -2.24
HOXA1P49639 Y_RNA.692-201ENST00000516627 105 ntBASIC1.04□□□□□ -2.24
HOXA1P49639 DNAJC19P9-201ENST00000555084 351 ntBASIC1.04□□□□□ -2.24
HOXA1P49639 SEPT14P17-201ENST00000617978 177 ntBASIC1.04□□□□□ -2.24
HOXA1P49639 AP001340.1-201ENST00000624405 217 ntBASIC1.04□□□□□ -2.24
HOXA1P49639 RNU6-1237P-201ENST00000384777 107 ntBASIC1.03□□□□□ -2.24
HOXA1P49639 SNORA40-201ENST00000388090 126 ntBASIC1.03□□□□□ -2.24
HOXA1P49639 RNU6-1319P-201ENST00000390855 104 ntBASIC1.03□□□□□ -2.24
HOXA1P49639 RNU6-747P-201ENST00000390928 104 ntBASIC1.03□□□□□ -2.24
HOXA1P49639 RNU6-241P-201ENST00000391148 104 ntBASIC1.03□□□□□ -2.24
HOXA1P49639 AL603908.1-201ENST00000406098 201 ntBASIC1.03□□□□□ -2.24
HOXA1P49639 RNU6-177P-201ENST00000411257 104 ntBASIC1.03□□□□□ -2.24
HOXA1P49639 RPS3AP1-201ENST00000413190 320 ntBASIC1.03□□□□□ -2.24
HOXA1P49639 AL512326.2-201ENST00000426359 151 ntBASIC1.03□□□□□ -2.24
HOXA1P49639 RNU7-21P-201ENST00000459430 62 ntBASIC1.03□□□□□ -2.24
HOXA1P49639 AC108752.1-201ENST00000484679 576 ntTSL 5 BASIC1.03□□□□□ -2.24
HOXA1P49639 AC133485.4-201ENST00000561835 220 ntBASIC1.03□□□□□ -2.24
HOXA1P49639 AC138907.4-201ENST00000570107 226 ntBASIC1.03□□□□□ -2.24
HOXA1P49639 Y_RNA.757-201ENST00000578934 114 ntBASIC1.03□□□□□ -2.24
HOXA1P49639 RNU6-94P-201ENST00000607728 107 ntBASIC1.03□□□□□ -2.24
HOXA1P49639 MIR6740-201ENST00000618268 113 ntBASIC1.03□□□□□ -2.24
HOXA1P49639 MIR6841-201ENST00000637129 72 ntBASIC1.03□□□□□ -2.24
HOXA1P49639 FAM135A-203ENST00000370479 5930 ntTSL 1 (best) BASIC1.03□□□□□ -2.24
HOXA1P49639 RNU6-704P-201ENST00000364162 103 ntBASIC1.02□□□□□ -2.25
HOXA1P49639 SNORA2B-201ENST00000384583 137 ntBASIC1.02□□□□□ -2.25
HOXA1P49639 SNORD38B-201ENST00000384690 67 ntBASIC1.02□□□□□ -2.25
HOXA1P49639 RNU6ATAC3P-201ENST00000387974 126 ntBASIC1.02□□□□□ -2.25
HOXA1P49639 5S_rRNA.2-201ENST00000391293 112 ntBASIC1.02□□□□□ -2.25
HOXA1P49639 RNA5SP144-201ENST00000410846 116 ntBASIC1.02□□□□□ -2.25
HOXA1P49639 AC002429.1-201ENST00000437672 148 ntBASIC1.02□□□□□ -2.25
HOXA1P49639 RPS29P28-201ENST00000446439 141 ntBASIC1.02□□□□□ -2.25
HOXA1P49639 MIR2115-201ENST00000516657 100 ntBASIC1.02□□□□□ -2.25
HOXA1P49639 RNU6-1234P-201ENST00000516877 103 ntBASIC1.02□□□□□ -2.25
HOXA1P49639 AC022523.2-201ENST00000561045 150 ntBASIC1.02□□□□□ -2.25
HOXA1P49639 MIR3124-201ENST00000582636 67 ntBASIC1.02□□□□□ -2.25
HOXA1P49639 AC021443.1-201ENST00000604478 211 ntBASIC1.02□□□□□ -2.25
HOXA1P49639 U7.2-201ENST00000607576 63 ntBASIC1.02□□□□□ -2.25
HOXA1P49639 SNORD38B-202ENST00000625943 69 ntBASIC1.02□□□□□ -2.25
HOXA1P49639 Y_RNA.470-201ENST00000384307 117 ntBASIC1.01□□□□□ -2.25
HOXA1P49639 SNORA80D-201ENST00000384488 135 ntBASIC1.01□□□□□ -2.25
HOXA1P49639 RNU6-342P-201ENST00000384521 104 ntBASIC1.01□□□□□ -2.25
HOXA1P49639 MIR613-201ENST00000385248 95 ntBASIC1.01□□□□□ -2.25
HOXA1P49639 AL591704.2-201ENST00000421658 181 ntBASIC1.01□□□□□ -2.25
HOXA1P49639 RNU7-164P-201ENST00000459221 62 ntBASIC1.01□□□□□ -2.25
HOXA1P49639 RNU7-123P-201ENST00000515911 60 ntBASIC1.01□□□□□ -2.25
HOXA1P49639 RNU6-781P-201ENST00000516377 101 ntBASIC1.01□□□□□ -2.25
HOXA1P49639 AC036111.3-201ENST00000526389 112 ntBASIC1.01□□□□□ -2.25
HOXA1P49639 MIR4305-201ENST00000583252 102 ntBASIC1.01□□□□□ -2.25
HOXA1P49639 AC027335.2-201ENST00000624030 375 ntBASIC1.01□□□□□ -2.25
HOXA1P49639 UBE3A-225ENST00000636667 5726 ntTSL 5 BASIC1□□□□□ -2.25
HOXA1P49639 CEP162-202ENST00000403245 5156 ntAPPRIS P1 TSL 5 BASIC1□□□□□ -2.25
HOXA1P49639 MIR588-201ENST00000384900 83 ntBASIC1□□□□□ -2.25
HOXA1P49639 RNU6-613P-201ENST00000410412 108 ntBASIC1□□□□□ -2.25
HOXA1P49639 AC063976.4-201ENST00000421971 163 ntBASIC1□□□□□ -2.25
HOXA1P49639 RNU7-107P-201ENST00000459121 61 ntBASIC1□□□□□ -2.25
HOXA1P49639 MIR4781-201ENST00000585250 76 ntBASIC1□□□□□ -2.25
HOXA1P49639 AL137067.1-201ENST00000615933 120 ntBASIC1□□□□□ -2.25
HOXA1P49639 HOTAIRM1_4.1-201ENST00000617934 102 ntBASIC1□□□□□ -2.25
HOXA1P49639 ZNF260-205ENST00000593142 4047 ntAPPRIS P1 TSL 1 (best) BASIC0.99□□□□□ -2.25
HOXA1P49639 Y_RNA.218-201ENST00000364218 104 ntBASIC0.99□□□□□ -2.25
HOXA1P49639 Y_RNA.280-201ENST00000364765 112 ntBASIC0.99□□□□□ -2.25
Retrieved 100 of 98,524 protein–RNA pairs in 218.4 ms