Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 RNU7-96P-201ENST00000459535 64 ntBASIC1.41□□□□□ -2.18
CIITAP33076 AP003716.2-201ENST00000528260 108 ntBASIC1.41□□□□□ -2.18
CIITAP33076 SNORA4-201ENST00000584302 138 ntBASIC1.41□□□□□ -2.18
CIITAP33076 MIR8065-201ENST00000620577 100 ntBASIC1.41□□□□□ -2.18
CIITAP33076 MIR26B-201ENST00000362251 77 ntBASIC1.4□□□□□ -2.19
CIITAP33076 MIR1276-201ENST00000408707 83 ntBASIC1.4□□□□□ -2.19
CIITAP33076 MIR1302-7-201ENST00000408841 72 ntBASIC1.4□□□□□ -2.19
CIITAP33076 RNU6-1190P-201ENST00000410811 104 ntBASIC1.4□□□□□ -2.19
CIITAP33076 RNU2-11P-201ENST00000459191 187 ntBASIC1.4□□□□□ -2.19
CIITAP33076 RNU6-958P-201ENST00000516995 106 ntBASIC1.4□□□□□ -2.19
CIITAP33076 AC108081.1-201ENST00000604358 221 ntBASIC1.4□□□□□ -2.19
CIITAP33076 AL022345.2-201ENST00000606307 135 ntBASIC1.4□□□□□ -2.19
CIITAP33076 MIR6734-201ENST00000621166 68 ntBASIC1.4□□□□□ -2.19
CIITAP33076 MIR342-201ENST00000362212 99 ntBASIC1.39□□□□□ -2.19
CIITAP33076 SNORA26.6-201ENST00000391256 115 ntBASIC1.39□□□□□ -2.19
CIITAP33076 AL035398.1-201ENST00000430869 322 ntBASIC1.39□□□□□ -2.19
CIITAP33076 TMSB4XP3-201ENST00000445144 114 ntBASIC1.39□□□□□ -2.19
CIITAP33076 RNU7-73P-201ENST00000458743 63 ntBASIC1.39□□□□□ -2.19
CIITAP33076 RNU6-971P-201ENST00000516920 106 ntBASIC1.39□□□□□ -2.19
CIITAP33076 IGKV1-22-201ENST00000524313 326 ntBASIC1.39□□□□□ -2.19
CIITAP33076 MIR548AO-201ENST00000579992 96 ntBASIC1.39□□□□□ -2.19
CIITAP33076 AL357312.1-201ENST00000603879 298 ntBASIC1.39□□□□□ -2.19
CIITAP33076 U7.2-201ENST00000607576 63 ntBASIC1.39□□□□□ -2.19
CIITAP33076 MIR8055-201ENST00000610739 97 ntBASIC1.39□□□□□ -2.19
CIITAP33076 TRAJ36-201ENST00000614481 58 ntAPPRIS P1 BASIC1.39□□□□□ -2.19
CIITAP33076 AL596211.1-201ENST00000569873 2277 ntBASIC1.38□□□□□ -2.19
CIITAP33076 Y_RNA.218-201ENST00000364218 104 ntBASIC1.38□□□□□ -2.19
CIITAP33076 SNORD113-1-201ENST00000365321 69 ntBASIC1.38□□□□□ -2.19
CIITAP33076 SNORA51.10-201ENST00000384418 136 ntBASIC1.38□□□□□ -2.19
CIITAP33076 MIR150-201ENST00000385048 84 ntBASIC1.38□□□□□ -2.19
CIITAP33076 TRAJ47-201ENST00000390490 57 ntAPPRIS P1 BASIC1.38□□□□□ -2.19
CIITAP33076 RNU7-67P-201ENST00000459003 62 ntBASIC1.38□□□□□ -2.19
CIITAP33076 RNU7-45P-201ENST00000459460 63 ntBASIC1.38□□□□□ -2.19
CIITAP33076 RNU7-80P-201ENST00000459562 61 ntBASIC1.38□□□□□ -2.19
CIITAP33076 AC107297.1-201ENST00000459991 176 ntBASIC1.38□□□□□ -2.19
CIITAP33076 RN7SKP88-201ENST00000516847 250 ntBASIC1.38□□□□□ -2.19
CIITAP33076 7SK.8-201ENST00000612110 250 ntBASIC1.38□□□□□ -2.19
CIITAP33076 7SK.11-201ENST00000615477 250 ntBASIC1.38□□□□□ -2.19
CIITAP33076 7SK.13-201ENST00000622040 250 ntBASIC1.38□□□□□ -2.19
CIITAP33076 CEP290-201ENST00000309041 7616 ntAPPRIS ALT1 TSL 5 BASIC1.37□□□□□ -2.19
CIITAP33076 AL157777.2-201ENST00000258070 137 ntBASIC1.37□□□□□ -2.19
CIITAP33076 AP003174.1-201ENST00000306533 376 ntTSL 2 BASIC1.37□□□□□ -2.19
CIITAP33076 Y_RNA.114-201ENST00000363265 113 ntBASIC1.37□□□□□ -2.19
CIITAP33076 SNORD18B-201ENST00000365659 72 ntBASIC1.37□□□□□ -2.19
CIITAP33076 AL365434.1-201ENST00000412362 380 ntTSL 3 BASIC1.37□□□□□ -2.19
CIITAP33076 AC090844.1-201ENST00000422019 156 ntBASIC1.37□□□□□ -2.19
CIITAP33076 RNU6-947P-201ENST00000516264 106 ntBASIC1.37□□□□□ -2.19
CIITAP33076 Y_RNA.692-201ENST00000516627 105 ntBASIC1.37□□□□□ -2.19
CIITAP33076 MIR4452-201ENST00000583004 71 ntBASIC1.37□□□□□ -2.19
CIITAP33076 AC079466.2-201ENST00000585394 185 ntTSL 5 BASIC1.37□□□□□ -2.19
CIITAP33076 AL020996.3-201ENST00000606617 222 ntBASIC1.37□□□□□ -2.19
CIITAP33076 TUG1_4.1-201ENST00000619464 181 ntBASIC1.37□□□□□ -2.19
CIITAP33076 AC091895.1-201ENST00000624494 256 ntBASIC1.37□□□□□ -2.19
CIITAP33076 MIR4251-201ENST00000635819 61 ntBASIC1.37□□□□□ -2.19
CIITAP33076 SNORA25.8-201ENST00000364831 128 ntBASIC1.36□□□□□ -2.19
CIITAP33076 RNU1-133P-201ENST00000364867 167 ntBASIC1.36□□□□□ -2.19
CIITAP33076 RNU6-959P-201ENST00000384671 107 ntBASIC1.36□□□□□ -2.19
CIITAP33076 MTATP6P21-201ENST00000440681 189 ntBASIC1.36□□□□□ -2.19
CIITAP33076 snoU13.16-201ENST00000459350 104 ntBASIC1.36□□□□□ -2.19
CIITAP33076 AC132825.6-201ENST00000638861 357 ntBASIC1.36□□□□□ -2.19
CIITAP33076 ANGPTL3-201ENST00000371129 2805 ntAPPRIS P1 TSL 1 (best) BASIC1.35□□□□□ -2.19
CIITAP33076 RNU6-53P-201ENST00000365367 106 ntBASIC1.35□□□□□ -2.19
CIITAP33076 RNY1P6-201ENST00000384193 109 ntBASIC1.35□□□□□ -2.19
CIITAP33076 Y_RNA.454-201ENST00000384224 113 ntBASIC1.35□□□□□ -2.19
CIITAP33076 RNU6-1067P-201ENST00000384752 107 ntBASIC1.35□□□□□ -2.19
CIITAP33076 HMGN1P33-201ENST00000432945 451 ntBASIC1.35□□□□□ -2.19
CIITAP33076 AL158147.1-201ENST00000443970 75 ntBASIC1.35□□□□□ -2.19
CIITAP33076 RNU6-1211P-201ENST00000459179 105 ntBASIC1.35□□□□□ -2.19
CIITAP33076 RNU6-240P-201ENST00000516098 97 ntBASIC1.35□□□□□ -2.19
CIITAP33076 RNU7-53P-201ENST00000516705 60 ntBASIC1.35□□□□□ -2.19
CIITAP33076 RNU6-1234P-201ENST00000516877 103 ntBASIC1.35□□□□□ -2.19
CIITAP33076 CYP3A52P-201ENST00000563326 91 ntBASIC1.35□□□□□ -2.19
CIITAP33076 SNORA25.3-201ENST00000363205 127 ntBASIC1.34□□□□□ -2.19
CIITAP33076 SNORA70.7-201ENST00000384159 133 ntBASIC1.34□□□□□ -2.19
CIITAP33076 MIR1185-1-201ENST00000408598 86 ntBASIC1.34□□□□□ -2.19
CIITAP33076 Y_RNA.617-201ENST00000410920 90 ntBASIC1.34□□□□□ -2.19
CIITAP33076 RNU6-1054P-201ENST00000411293 104 ntBASIC1.34□□□□□ -2.19
CIITAP33076 AL133373.1-201ENST00000497098 94 ntBASIC1.34□□□□□ -2.19
CIITAP33076 RNU4ATAC11P-201ENST00000515939 126 ntBASIC1.34□□□□□ -2.19
CIITAP33076 RNU6-113P-201ENST00000516653 101 ntBASIC1.34□□□□□ -2.19
CIITAP33076 PRELID3BP2-201ENST00000605362 201 ntBASIC1.34□□□□□ -2.19
CIITAP33076 AC011603.4-201ENST00000611325 277 ntBASIC1.34□□□□□ -2.19
CIITAP33076 Z97988.1-201ENST00000637697 135 ntBASIC1.34□□□□□ -2.19
CIITAP33076 LRRIQ1-202ENST00000393217 5394 ntAPPRIS P1 TSL 1 (best) BASIC1.33□□□□□ -2.2
CIITAP33076 RNU6-235P-201ENST00000362644 107 ntBASIC1.33□□□□□ -2.2
CIITAP33076 Y_RNA.71-201ENST00000362892 104 ntBASIC1.33□□□□□ -2.2
CIITAP33076 RNA5SP48-201ENST00000363969 126 ntBASIC1.33□□□□□ -2.2
CIITAP33076 RNU4-16P-201ENST00000364737 141 ntBASIC1.33□□□□□ -2.2
CIITAP33076 Y_RNA.363-201ENST00000365529 113 ntBASIC1.33□□□□□ -2.2
CIITAP33076 Y_RNA.366-201ENST00000365540 102 ntBASIC1.33□□□□□ -2.2
CIITAP33076 Y_RNA.525-201ENST00000384570 113 ntBASIC1.33□□□□□ -2.2
CIITAP33076 RNU6-1319P-201ENST00000390855 104 ntBASIC1.33□□□□□ -2.2
CIITAP33076 RNU6-747P-201ENST00000390928 104 ntBASIC1.33□□□□□ -2.2
CIITAP33076 RNU6-241P-201ENST00000391148 104 ntBASIC1.33□□□□□ -2.2
CIITAP33076 RNU6-177P-201ENST00000411257 104 ntBASIC1.33□□□□□ -2.2
CIITAP33076 POLR2J4-204ENST00000418424 324 ntBASIC1.33□□□□□ -2.2
CIITAP33076 AC048334.1-201ENST00000477975 159 ntBASIC1.33□□□□□ -2.2
CIITAP33076 RNU6-1258P-201ENST00000516911 111 ntBASIC1.33□□□□□ -2.2
CIITAP33076 RNU7-70P-201ENST00000516941 66 ntBASIC1.33□□□□□ -2.2
CIITAP33076 RNU6-789P-201ENST00000517105 102 ntBASIC1.33□□□□□ -2.2
Retrieved 100 of 98,524 protein–RNA pairs in 211.7 ms