Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 FOXP2-210ENST00000403559 6415 ntTSL 2 BASIC2.64□□□□□ -1.99
MSX1P28360 MCF2-208ENST00000519895 3346 ntAPPRIS ALT2 TSL 2 BASIC2.64□□□□□ -1.99
MSX1P28360 GRAMD1C-202ENST00000440446 3475 ntTSL 1 (best) BASIC2.64□□□□□ -1.99
MSX1P28360 RNA5SP432-201ENST00000362480 116 ntBASIC2.64□□□□□ -1.99
MSX1P28360 SNORD115-37-201ENST00000363768 82 ntBASIC2.64□□□□□ -1.99
MSX1P28360 SNORA2B-201ENST00000384583 137 ntBASIC2.64□□□□□ -1.99
MSX1P28360 MIR520C-201ENST00000385005 87 ntBASIC2.64□□□□□ -1.99
MSX1P28360 MIR889-201ENST00000401280 79 ntBASIC2.64□□□□□ -1.99
MSX1P28360 RNA5SP184-201ENST00000411071 108 ntBASIC2.64□□□□□ -1.99
MSX1P28360 MIR3945-201ENST00000581853 98 ntBASIC2.64□□□□□ -1.99
MSX1P28360 FAM13A-AS1_1.1-201ENST00000612555 119 ntBASIC2.64□□□□□ -1.99
MSX1P28360 CYP19A1-220ENST00000613097 123 ntTSL 5 BASIC2.64□□□□□ -1.99
MSX1P28360 ZMYM1-201ENST00000359858 4175 ntAPPRIS P1 TSL 1 (best) BASIC2.64□□□□□ -1.99
MSX1P28360 GCNT4-201ENST00000322348 5554 ntAPPRIS P1 BASIC2.63□□□□□ -1.99
MSX1P28360 RNY1P13-201ENST00000365030 105 ntBASIC2.63□□□□□ -1.99
MSX1P28360 RNU6-1237P-201ENST00000384777 107 ntBASIC2.63□□□□□ -1.99
MSX1P28360 TRAJ61-201ENST00000390479 60 ntAPPRIS P1 BASIC2.63□□□□□ -1.99
MSX1P28360 LINC00393-201ENST00000443621 282 ntTSL 3 BASIC2.63□□□□□ -1.99
MSX1P28360 VTRNA2-2P-201ENST00000516091 103 ntBASIC2.63□□□□□ -1.99
MSX1P28360 AC140658.3-201ENST00000567603 271 ntBASIC2.63□□□□□ -1.99
MSX1P28360 MIR548AO-201ENST00000579992 96 ntBASIC2.63□□□□□ -1.99
MSX1P28360 TDRD15-201ENST00000405799 6135 ntAPPRIS P1 TSL 2 BASIC2.62□□□□□ -1.99
MSX1P28360 AC062016.1-201ENST00000355719 319 ntBASIC2.62□□□□□ -1.99
MSX1P28360 SNORD38B-201ENST00000384690 67 ntBASIC2.62□□□□□ -1.99
MSX1P28360 MIR512-1-201ENST00000384913 84 ntBASIC2.62□□□□□ -1.99
MSX1P28360 RNU6-917P-201ENST00000516294 104 ntBASIC2.62□□□□□ -1.99
MSX1P28360 MIR4435-1-201ENST00000582552 80 ntBASIC2.62□□□□□ -1.99
MSX1P28360 SNORD38B-202ENST00000625943 69 ntBASIC2.62□□□□□ -1.99
MSX1P28360 LIG4-203ENST00000442234 3982 ntAPPRIS P1 TSL 1 (best) BASIC2.62□□□□□ -1.99
MSX1P28360 APC-201ENST00000257430 10701 ntAPPRIS P1 TSL 5 BASIC2.62□□□□□ -1.99
MSX1P28360 CHD9-202ENST00000398510 11337 ntTSL 1 (best) BASIC2.61□□□□□ -1.99
MSX1P28360 Y_RNA.168-201ENST00000363740 102 ntBASIC2.61□□□□□ -1.99
MSX1P28360 AC108206.1-201ENST00000570186 4159 ntBASIC2.6□□□□□ -1.99
MSX1P28360 AL161431.1-201ENST00000618966 4205 ntBASIC2.6□□□□□ -1.99
MSX1P28360 PRKAA2-201ENST00000371244 9347 ntAPPRIS P2 TSL 1 (best) BASIC2.6□□□□□ -1.99
MSX1P28360 HSBP1P2-201ENST00000299671 229 ntBASIC2.6□□□□□ -1.99
MSX1P28360 RNU1-51P-201ENST00000365345 176 ntBASIC2.6□□□□□ -1.99
MSX1P28360 RNU1-138P-201ENST00000384093 164 ntBASIC2.6□□□□□ -1.99
MSX1P28360 RNU6-519P-201ENST00000410590 108 ntBASIC2.6□□□□□ -1.99
MSX1P28360 AP004217.1-201ENST00000480579 346 ntBASIC2.6□□□□□ -1.99
MSX1P28360 RPS29P11-201ENST00000496507 171 ntBASIC2.6□□□□□ -1.99
MSX1P28360 AC141846.1-201ENST00000568348 142 ntBASIC2.6□□□□□ -1.99
MSX1P28360 U1.36-201ENST00000620684 176 ntBASIC2.6□□□□□ -1.99
MSX1P28360 MIR4251-201ENST00000635819 61 ntBASIC2.6□□□□□ -1.99
MSX1P28360 ZNF117-204ENST00000620222 5317 ntAPPRIS P1 TSL 1 (best) BASIC2.6□□□□□ -1.99
MSX1P28360 ZNF567-201ENST00000360729 2691 ntTSL 1 (best) BASIC2.6□□□□□ -1.99
MSX1P28360 ZNF680-202ENST00000447137 2159 ntTSL 2 BASIC2.6□□□□□ -1.99
MSX1P28360 AC008781.2-201ENST00000502205 2480 ntTSL 1 (best) BASIC2.59□□□□□ -1.99
MSX1P28360 RNU6-1123P-201ENST00000362347 106 ntBASIC2.59□□□□□ -1.99
MSX1P28360 RNU4-82P-201ENST00000362443 140 ntBASIC2.59□□□□□ -1.99
MSX1P28360 RNU6-788P-201ENST00000390967 104 ntBASIC2.59□□□□□ -1.99
MSX1P28360 AC019129.1-201ENST00000403786 261 ntBASIC2.59□□□□□ -1.99
MSX1P28360 MIR1261-201ENST00000408659 82 ntBASIC2.59□□□□□ -1.99
MSX1P28360 RNA5SP237-201ENST00000410414 113 ntBASIC2.59□□□□□ -1.99
MSX1P28360 AC133485.1-201ENST00000567176 124 ntBASIC2.59□□□□□ -1.99
MSX1P28360 PIK3CA-201ENST00000263967 9093 ntAPPRIS P1 TSL 2 BASIC2.59□□□□□ -2
MSX1P28360 ATP11C-202ENST00000361648 6010 ntAPPRIS ALT2 TSL 1 (best) BASIC2.58□□□□□ -2
MSX1P28360 MIR26A1-201ENST00000362205 77 ntBASIC2.58□□□□□ -2
MSX1P28360 AC108938.1-201ENST00000451204 136 ntBASIC2.58□□□□□ -2
MSX1P28360 MIR3935-201ENST00000583472 104 ntBASIC2.58□□□□□ -2
MSX1P28360 AC145423.2-201ENST00000610631 239 ntBASIC2.58□□□□□ -2
MSX1P28360 FO624990.1-201ENST00000636373 85 ntBASIC2.58□□□□□ -2
MSX1P28360 RNU6-315P-201ENST00000362666 107 ntBASIC2.57□□□□□ -2
MSX1P28360 RNA5SP133-201ENST00000363368 119 ntBASIC2.57□□□□□ -2
MSX1P28360 RNU6-1229P-201ENST00000364295 107 ntBASIC2.57□□□□□ -2
MSX1P28360 RNU6-360P-201ENST00000390944 104 ntBASIC2.57□□□□□ -2
MSX1P28360 MIR1236-201ENST00000408340 102 ntBASIC2.57□□□□□ -2
MSX1P28360 RNA5SP100-201ENST00000410903 110 ntBASIC2.57□□□□□ -2
MSX1P28360 RNA5SP59-201ENST00000410922 110 ntBASIC2.57□□□□□ -2
MSX1P28360 RNA5SP508-201ENST00000411327 119 ntBASIC2.57□□□□□ -2
MSX1P28360 AC087499.2-201ENST00000432861 149 ntBASIC2.57□□□□□ -2
MSX1P28360 AC087499.7-201ENST00000441958 109 ntBASIC2.57□□□□□ -2
MSX1P28360 SNORA9.3-201ENST00000516383 129 ntBASIC2.57□□□□□ -2
MSX1P28360 5S_rRNA.3-201ENST00000517021 110 ntBASIC2.57□□□□□ -2
MSX1P28360 MIR3605-201ENST00000583214 100 ntBASIC2.57□□□□□ -2
MSX1P28360 5S_rRNA.19-201ENST00000612131 110 ntBASIC2.57□□□□□ -2
MSX1P28360 5S_rRNA.18-201ENST00000621941 110 ntBASIC2.57□□□□□ -2
MSX1P28360 FOXP2-211ENST00000408937 6443 ntTSL 1 (best) BASIC2.57□□□□□ -2
MSX1P28360 NEDD1-204ENST00000457368 3162 ntTSL 2 BASIC2.57□□□□□ -2
MSX1P28360 AKAP9-203ENST00000359028 12247 ntAPPRIS ALT2 TSL 5 BASIC2.56□□□□□ -2
MSX1P28360 SLC6A15-202ENST00000309283 3108 ntTSL 5 BASIC2.56□□□□□ -2
MSX1P28360 LIFR-201ENST00000263409 10089 ntAPPRIS P1 TSL 1 (best) BASIC2.56□□□□□ -2
MSX1P28360 RNY1P2-201ENST00000364820 117 ntBASIC2.56□□□□□ -2
MSX1P28360 SUMO1P4-201ENST00000429430 302 ntBASIC2.56□□□□□ -2
MSX1P28360 AC027119.1-201ENST00000440877 241 ntBASIC2.56□□□□□ -2
MSX1P28360 MIR8066-201ENST00000617280 78 ntBASIC2.56□□□□□ -2
MSX1P28360 LEPR-202ENST00000349533 8227 ntAPPRIS P1 TSL 1 (best) BASIC2.55□□□□□ -2
MSX1P28360 Y_RNA.565-201ENST00000384719 101 ntBASIC2.55□□□□□ -2
MSX1P28360 RNU6-129P-201ENST00000391022 107 ntBASIC2.55□□□□□ -2
MSX1P28360 RNU6-322P-201ENST00000516010 103 ntBASIC2.55□□□□□ -2
MSX1P28360 RNU7-153P-201ENST00000516455 62 ntBASIC2.55□□□□□ -2
MSX1P28360 MIR4658-201ENST00000584344 65 ntBASIC2.55□□□□□ -2
MSX1P28360 AP000753.3-201ENST00000604083 169 ntBASIC2.55□□□□□ -2
MSX1P28360 AL662814.1-201ENST00000617364 121 ntBASIC2.55□□□□□ -2
MSX1P28360 RPS29P6-201ENST00000438196 145 ntBASIC2.54□□□□□ -2
MSX1P28360 RNU7-41P-201ENST00000515917 61 ntBASIC2.54□□□□□ -2
MSX1P28360 SNORA25.13-201ENST00000516395 103 ntBASIC2.54□□□□□ -2
MSX1P28360 CERS3-AS1-201ENST00000560643 372 ntTSL 3 BASIC2.54□□□□□ -2
MSX1P28360 ST7-AS2_1.1-201ENST00000622900 72 ntBASIC2.54□□□□□ -2
MSX1P28360 BRDT-206ENST00000402388 3125 ntAPPRIS P3 TSL 1 (best) BASIC2.53□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 167.9 ms