Protein–RNA interactions for Protein: P28356

HOXD9, Homeobox protein Hox-D9, humanhuman

Predicted RBP Predictions only

Length 352 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD9P28356 RNU7-43P-201ENST00000516554 64 ntBASIC1.54□□□□□ -2.16
HOXD9P28356 RNY4P20-201ENST00000516678 93 ntBASIC1.54□□□□□ -2.16
HOXD9P28356 RNU7-53P-201ENST00000516705 60 ntBASIC1.54□□□□□ -2.16
HOXD9P28356 SNORA31.24-201ENST00000517232 57 ntBASIC1.54□□□□□ -2.16
HOXD9P28356 HSPE1P19-201ENST00000603327 295 ntBASIC1.54□□□□□ -2.16
HOXD9P28356 MIR4791-201ENST00000607666 84 ntBASIC1.54□□□□□ -2.16
HOXD9P28356 AC243994.1-201ENST00000618627 109 ntBASIC1.54□□□□□ -2.16
HOXD9P28356 MIR8063-201ENST00000621930 81 ntBASIC1.54□□□□□ -2.16
HOXD9P28356 AC021613.1-201ENST00000623880 111 ntBASIC1.54□□□□□ -2.16
HOXD9P28356 UGP2-230ENST00000626380 276 ntTSL 5 BASIC1.54□□□□□ -2.16
HOXD9P28356 RNU6-755P-201ENST00000364400 103 ntBASIC1.53□□□□□ -2.16
HOXD9P28356 MIR320A-201ENST00000385302 82 ntBASIC1.53□□□□□ -2.16
HOXD9P28356 BRDT-206ENST00000402388 3125 ntAPPRIS P3 TSL 1 (best) BASIC1.53□□□□□ -2.16
HOXD9P28356 RNA5SP144-201ENST00000410846 116 ntBASIC1.53□□□□□ -2.16
HOXD9P28356 AC063976.4-201ENST00000421971 163 ntBASIC1.53□□□□□ -2.16
HOXD9P28356 RNU7-67P-201ENST00000459003 62 ntBASIC1.53□□□□□ -2.16
HOXD9P28356 RNU7-164P-201ENST00000459221 62 ntBASIC1.53□□□□□ -2.16
HOXD9P28356 RNU6-958P-201ENST00000516995 106 ntBASIC1.53□□□□□ -2.16
HOXD9P28356 MIR3122-201ENST00000577243 73 ntBASIC1.53□□□□□ -2.16
HOXD9P28356 AC015688.6-201ENST00000577737 104 ntBASIC1.53□□□□□ -2.16
HOXD9P28356 AC025887.1-201ENST00000578349 264 ntTSL 3 BASIC1.53□□□□□ -2.16
HOXD9P28356 MIR4679-2-201ENST00000578358 77 ntBASIC1.53□□□□□ -2.16
HOXD9P28356 AC012493.3-201ENST00000604494 112 ntBASIC1.53□□□□□ -2.16
HOXD9P28356 AC106754.2-201ENST00000623006 233 ntBASIC1.53□□□□□ -2.16
HOXD9P28356 LMBR1-222ENST00000638959 93 ntTSL 5 BASIC1.53□□□□□ -2.16
HOXD9P28356 Y_RNA.430-201ENST00000384081 110 ntBASIC1.52□□□□□ -2.17
HOXD9P28356 RNU6-880P-201ENST00000384526 107 ntBASIC1.52□□□□□ -2.17
HOXD9P28356 MIR548A1-201ENST00000385041 97 ntBASIC1.52□□□□□ -2.17
HOXD9P28356 MIR513A1-201ENST00000385138 129 ntBASIC1.52□□□□□ -2.17
HOXD9P28356 RNU1-78P-201ENST00000391248 165 ntBASIC1.52□□□□□ -2.17
HOXD9P28356 SNORA26.6-201ENST00000391256 115 ntBASIC1.52□□□□□ -2.17
HOXD9P28356 AL354695.1-201ENST00000427935 228 ntBASIC1.52□□□□□ -2.17
HOXD9P28356 RNU6-893P-201ENST00000458841 100 ntBASIC1.52□□□□□ -2.17
HOXD9P28356 AC108729.3-201ENST00000513484 108 ntBASIC1.52□□□□□ -2.17
HOXD9P28356 RNU7-123P-201ENST00000515911 60 ntBASIC1.52□□□□□ -2.17
HOXD9P28356 RNU6-322P-201ENST00000516010 103 ntBASIC1.52□□□□□ -2.17
HOXD9P28356 RNU2-35P-201ENST00000516446 142 ntBASIC1.52□□□□□ -2.17
HOXD9P28356 MIR3152-201ENST00000579801 74 ntBASIC1.52□□□□□ -2.17
HOXD9P28356 MIR4764-201ENST00000580680 88 ntBASIC1.52□□□□□ -2.17
HOXD9P28356 GNAS-AS1_4.1-201ENST00000616546 112 ntBASIC1.52□□□□□ -2.17
HOXD9P28356 Metazoa_SRP.32-201ENST00000622685 286 ntBASIC1.52□□□□□ -2.17
HOXD9P28356 FSIP2-206ENST00000611759 3882 ntAPPRIS ALT2 TSL 5 BASIC1.52□□□□□ -2.17
HOXD9P28356 KIAA1107-201ENST00000370378 4622 ntTSL 5 BASIC1.51□□□□□ -2.17
HOXD9P28356 TDRD15-202ENST00000622654 5805 ntAPPRIS P1 BASIC1.51□□□□□ -2.17
HOXD9P28356 Y_RNA.35-201ENST00000362601 101 ntBASIC1.51□□□□□ -2.17
HOXD9P28356 MIR1304-201ENST00000408243 91 ntBASIC1.51□□□□□ -2.17
HOXD9P28356 POLR2J4-204ENST00000418424 324 ntBASIC1.51□□□□□ -2.17
HOXD9P28356 snoU13.16-201ENST00000459350 104 ntBASIC1.51□□□□□ -2.17
HOXD9P28356 MIR4422-201ENST00000581938 83 ntBASIC1.51□□□□□ -2.17
HOXD9P28356 AL513534.2-201ENST00000603836 250 ntBASIC1.51□□□□□ -2.17
HOXD9P28356 HOTAIRM1_4.1-201ENST00000617934 102 ntBASIC1.51□□□□□ -2.17
HOXD9P28356 KIAA1551-201ENST00000312561 6230 ntAPPRIS P1 TSL 1 (best) BASIC1.51□□□□□ -2.17
HOXD9P28356 Y_RNA.213-201ENST00000364178 111 ntBASIC1.5□□□□□ -2.17
HOXD9P28356 RNU4-16P-201ENST00000364737 141 ntBASIC1.5□□□□□ -2.17
HOXD9P28356 Y_RNA.281-201ENST00000364774 94 ntBASIC1.5□□□□□ -2.17
HOXD9P28356 RNA5SP259-201ENST00000365541 109 ntBASIC1.5□□□□□ -2.17
HOXD9P28356 RNU6-913P-201ENST00000390913 95 ntBASIC1.5□□□□□ -2.17
HOXD9P28356 RNA5SP261-201ENST00000410536 106 ntBASIC1.5□□□□□ -2.17
HOXD9P28356 AC007012.1-201ENST00000567192 175 ntBASIC1.5□□□□□ -2.17
HOXD9P28356 AL020996.3-201ENST00000606617 222 ntBASIC1.5□□□□□ -2.17
HOXD9P28356 MIR8055-201ENST00000610739 97 ntBASIC1.5□□□□□ -2.17
HOXD9P28356 MIR6841-201ENST00000637129 72 ntBASIC1.5□□□□□ -2.17
HOXD9P28356 HFM1-201ENST00000370425 4931 ntAPPRIS P1 TSL 1 (best) BASIC1.5□□□□□ -2.17
HOXD9P28356 RNY4P6-201ENST00000363667 96 ntBASIC1.49□□□□□ -2.17
HOXD9P28356 SNORD1A-201ENST00000364968 72 ntBASIC1.49□□□□□ -2.17
HOXD9P28356 SNORA51.10-201ENST00000384418 136 ntBASIC1.49□□□□□ -2.17
HOXD9P28356 RNU6-1104P-201ENST00000384723 104 ntBASIC1.49□□□□□ -2.17
HOXD9P28356 MIR520C-201ENST00000385005 87 ntBASIC1.49□□□□□ -2.17
HOXD9P28356 MT-TI-201ENST00000387365 69 ntBASIC1.49□□□□□ -2.17
HOXD9P28356 MIR759-201ENST00000390224 91 ntBASIC1.49□□□□□ -2.17
HOXD9P28356 AL451046.2-201ENST00000403074 277 ntBASIC1.49□□□□□ -2.17
HOXD9P28356 AL022718.1-201ENST00000412004 84 ntBASIC1.49□□□□□ -2.17
HOXD9P28356 AC079760.1-201ENST00000456952 202 ntTSL 3 BASIC1.49□□□□□ -2.17
HOXD9P28356 PDCD5P2-201ENST00000507570 312 ntBASIC1.49□□□□□ -2.17
HOXD9P28356 TRAJ36-201ENST00000614481 58 ntAPPRIS P1 BASIC1.49□□□□□ -2.17
HOXD9P28356 MIR6717-201ENST00000622747 73 ntBASIC1.49□□□□□ -2.17
HOXD9P28356 AC008133.2-201ENST00000624540 351 ntBASIC1.49□□□□□ -2.17
HOXD9P28356 ZNF209P-201ENST00000593450 2304 ntBASIC1.49□□□□□ -2.17
HOXD9P28356 SNORD33-201ENST00000362761 85 ntBASIC1.48□□□□□ -2.17
HOXD9P28356 SNORD115-2-201ENST00000362842 82 ntBASIC1.48□□□□□ -2.17
HOXD9P28356 SNORD115-20-201ENST00000365099 82 ntBASIC1.48□□□□□ -2.17
HOXD9P28356 SNORA22-201ENST00000383907 134 ntBASIC1.48□□□□□ -2.17
HOXD9P28356 Y_RNA.531-201ENST00000384589 121 ntBASIC1.48□□□□□ -2.17
HOXD9P28356 SNORD41-201ENST00000386967 70 ntBASIC1.48□□□□□ -2.17
HOXD9P28356 RNU7-45P-201ENST00000459460 63 ntBASIC1.48□□□□□ -2.17
HOXD9P28356 AC079140.2-201ENST00000506193 142 ntBASIC1.48□□□□□ -2.17
HOXD9P28356 RNU6-1053P-201ENST00000515930 101 ntBASIC1.48□□□□□ -2.17
HOXD9P28356 RNU6-412P-201ENST00000516434 106 ntBASIC1.48□□□□□ -2.17
HOXD9P28356 IGHVII-40-1-201ENST00000517316 58 ntBASIC1.48□□□□□ -2.17
HOXD9P28356 AC004812.1-201ENST00000540773 146 ntBASIC1.48□□□□□ -2.17
HOXD9P28356 ZGRF1-203ENST00000445203 6529 ntAPPRIS P1 TSL 5 BASIC1.48□□□□□ -2.17
HOXD9P28356 MIR302D-201ENST00000362275 68 ntBASIC1.47□□□□□ -2.17
HOXD9P28356 RNU6-153P-201ENST00000364422 104 ntBASIC1.47□□□□□ -2.17
HOXD9P28356 AL512326.2-201ENST00000426359 151 ntBASIC1.47□□□□□ -2.17
HOXD9P28356 AC009474.2-201ENST00000451383 136 ntBASIC1.47□□□□□ -2.17
HOXD9P28356 MIR4421-201ENST00000578133 69 ntBASIC1.47□□□□□ -2.17
HOXD9P28356 AL359821.1-201ENST00000605519 182 ntBASIC1.47□□□□□ -2.17
HOXD9P28356 SNORA22.1-201ENST00000362701 134 ntBASIC1.46□□□□□ -2.18
HOXD9P28356 Y_RNA.85-201ENST00000363014 111 ntBASIC1.46□□□□□ -2.18
HOXD9P28356 RNU6-321P-201ENST00000410912 106 ntBASIC1.46□□□□□ -2.18
Retrieved 100 of 98,524 protein–RNA pairs in 167.7 ms