Protein–RNA interactions for Protein: O75150

RNF40, E3 ubiquitin-protein ligase BRE1B, humanhuman

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40O75150 MIR4764-201ENST00000580680 88 ntBASIC3.18□□□□□ -1.9
RNF40O75150 MIR622-201ENST00000638396 96 ntBASIC3.18□□□□□ -1.9
RNF40O75150 FGF14-201ENST00000376131 12882 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
RNF40O75150 TSGA10-205ENST00000410001 3036 ntAPPRIS P2 TSL 1 (best) BASIC3.18□□□□□ -1.9
RNF40O75150 TDRD15-201ENST00000405799 6135 ntAPPRIS P1 TSL 2 BASIC3.17□□□□□ -1.9
RNF40O75150 RICTOR-201ENST00000296782 7505 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
RNF40O75150 SNORD15B-201ENST00000384714 146 ntBASIC3.17□□□□□ -1.9
RNF40O75150 RN7SKP220-201ENST00000410611 288 ntBASIC3.17□□□□□ -1.9
RNF40O75150 RN7SL20P-201ENST00000488827 297 ntBASIC3.17□□□□□ -1.9
RNF40O75150 AC092435.3-201ENST00000565538 3654 ntBASIC3.16□□□□□ -1.9
RNF40O75150 ZMYM1-210ENST00000611874 4466 ntAPPRIS P1 TSL 2 BASIC3.16□□□□□ -1.9
RNF40O75150 PIK3C2G-201ENST00000266497 4764 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
RNF40O75150 FAM46D-201ENST00000308293 3011 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
RNF40O75150 RNU6-949P-201ENST00000384040 107 ntBASIC3.16□□□□□ -1.9
RNF40O75150 RNU6-1237P-201ENST00000384777 107 ntBASIC3.16□□□□□ -1.9
RNF40O75150 MIR520A-201ENST00000384862 85 ntBASIC3.16□□□□□ -1.9
RNF40O75150 EEF1A1P41-201ENST00000414667 207 ntBASIC3.16□□□□□ -1.9
RNF40O75150 RNU7-26P-201ENST00000458980 63 ntBASIC3.16□□□□□ -1.9
RNF40O75150 RNU6-850P-201ENST00000516934 103 ntBASIC3.16□□□□□ -1.9
RNF40O75150 AC138749.4-201ENST00000563970 127 ntBASIC3.16□□□□□ -1.9
RNF40O75150 SUB1P4-201ENST00000566062 339 ntBASIC3.16□□□□□ -1.9
RNF40O75150 CAPS2-203ENST00000393284 3430 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
RNF40O75150 MIR424-201ENST00000362227 98 ntBASIC3.15□□□□□ -1.91
RNF40O75150 RNU6-811P-201ENST00000384069 107 ntBASIC3.15□□□□□ -1.91
RNF40O75150 TRAJ1-201ENST00000390536 62 ntAPPRIS P1 BASIC3.15□□□□□ -1.91
RNF40O75150 SNORD67-201ENST00000390833 111 ntBASIC3.15□□□□□ -1.91
RNF40O75150 AL023284.1-201ENST00000403956 276 ntBASIC3.15□□□□□ -1.91
RNF40O75150 MIR4709-201ENST00000577272 72 ntBASIC3.15□□□□□ -1.91
RNF40O75150 MIR22-201ENST00000362190 85 ntBASIC3.14□□□□□ -1.91
RNF40O75150 RNU6-571P-201ENST00000384128 107 ntBASIC3.14□□□□□ -1.91
RNF40O75150 MIR635-201ENST00000384830 98 ntBASIC3.14□□□□□ -1.91
RNF40O75150 RNU6-75P-201ENST00000515944 104 ntBASIC3.14□□□□□ -1.91
RNF40O75150 RNA5SP356-201ENST00000515972 94 ntBASIC3.14□□□□□ -1.91
RNF40O75150 RNU4ATAC9P-201ENST00000517146 126 ntBASIC3.14□□□□□ -1.91
RNF40O75150 PRKG1-205ENST00000401604 5922 ntTSL 5 BASIC3.14□□□□□ -1.91
RNF40O75150 OMD-201ENST00000375550 2449 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
RNF40O75150 ERBIN-204ENST00000380943 6410 ntAPPRIS P3 TSL 1 (best) BASIC3.13□□□□□ -1.91
RNF40O75150 THOC2-201ENST00000245838 5609 ntAPPRIS P1 TSL 5 BASIC3.13□□□□□ -1.91
RNF40O75150 RNU6-112P-201ENST00000363599 104 ntBASIC3.13□□□□□ -1.91
RNF40O75150 RNU1-148P-201ENST00000384472 162 ntBASIC3.13□□□□□ -1.91
RNF40O75150 SNORA48.1-201ENST00000390879 135 ntBASIC3.13□□□□□ -1.91
RNF40O75150 AL139132.1-201ENST00000431587 344 ntBASIC3.13□□□□□ -1.91
RNF40O75150 snoU13.27-201ENST00000459278 104 ntBASIC3.13□□□□□ -1.91
RNF40O75150 GTF3AP2-201ENST00000557014 266 ntBASIC3.13□□□□□ -1.91
RNF40O75150 MALAT1-207ENST00000613376 132 ntTSL 3 BASIC3.13□□□□□ -1.91
RNF40O75150 AL449363.1-201ENST00000617815 186 ntBASIC3.13□□□□□ -1.91
RNF40O75150 MIR1297-201ENST00000637311 77 ntBASIC3.13□□□□□ -1.91
RNF40O75150 SIRT1-202ENST00000403579 3333 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
RNF40O75150 Y_RNA.205-201ENST00000364128 113 ntBASIC3.12□□□□□ -1.91
RNF40O75150 AC074348.1-201ENST00000426503 132 ntBASIC3.12□□□□□ -1.91
RNF40O75150 RN7SL429P-201ENST00000479090 223 ntBASIC3.12□□□□□ -1.91
RNF40O75150 RN7SL489P-201ENST00000486185 223 ntBASIC3.12□□□□□ -1.91
RNF40O75150 RPS27P21-201ENST00000486977 252 ntBASIC3.12□□□□□ -1.91
RNF40O75150 RN7SL327P-201ENST00000488659 223 ntBASIC3.12□□□□□ -1.91
RNF40O75150 RNU6-56P-201ENST00000516986 93 ntBASIC3.12□□□□□ -1.91
RNF40O75150 MIR4484-201ENST00000582855 83 ntBASIC3.12□□□□□ -1.91
RNF40O75150 RN7SL853P-201ENST00000617250 223 ntBASIC3.12□□□□□ -1.91
RNF40O75150 PRKACB-207ENST00000394838 4294 ntTSL 5 BASIC3.12□□□□□ -1.91
RNF40O75150 CACNB4-228ENST00000636598 7808 ntTSL 5 BASIC3.11□□□□□ -1.91
RNF40O75150 SNORA25.9-201ENST00000365087 128 ntBASIC3.11□□□□□ -1.91
RNF40O75150 SNORD38B-201ENST00000384690 67 ntBASIC3.11□□□□□ -1.91
RNF40O75150 RNU6-70P-201ENST00000516438 60 ntBASIC3.11□□□□□ -1.91
RNF40O75150 RNA5SP137-201ENST00000516833 135 ntBASIC3.11□□□□□ -1.91
RNF40O75150 MIR3064-201ENST00000581130 66 ntBASIC3.11□□□□□ -1.91
RNF40O75150 SNORD38B-202ENST00000625943 69 ntBASIC3.11□□□□□ -1.91
RNF40O75150 FTX-214ENST00000638437 12267 ntTSL 5 BASIC3.11□□□□□ -1.91
RNF40O75150 LIG4-203ENST00000442234 3982 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
RNF40O75150 MIR449A-201ENST00000362113 91 ntBASIC3.1□□□□□ -1.91
RNF40O75150 RNU6-132P-201ENST00000383863 107 ntBASIC3.1□□□□□ -1.91
RNF40O75150 RNU6-301P-201ENST00000384277 107 ntBASIC3.1□□□□□ -1.91
RNF40O75150 SNORA72.6-201ENST00000384520 129 ntBASIC3.1□□□□□ -1.91
RNF40O75150 SNORD77.2-201ENST00000391045 68 ntBASIC3.1□□□□□ -1.91
RNF40O75150 RNU11-3P-201ENST00000391111 133 ntBASIC3.1□□□□□ -1.91
RNF40O75150 RNA5SP237-201ENST00000410414 113 ntBASIC3.1□□□□□ -1.91
RNF40O75150 HMGN2P3-201ENST00000433603 273 ntBASIC3.1□□□□□ -1.91
RNF40O75150 HMGN2P5-201ENST00000436882 273 ntBASIC3.1□□□□□ -1.91
RNF40O75150 Y_RNA.681-201ENST00000516445 113 ntBASIC3.1□□□□□ -1.91
RNF40O75150 SNORA18.5-201ENST00000516616 101 ntBASIC3.1□□□□□ -1.91
RNF40O75150 RNU6-807P-201ENST00000516805 107 ntBASIC3.1□□□□□ -1.91
RNF40O75150 CERS3-AS1-201ENST00000560643 372 ntTSL 3 BASIC3.1□□□□□ -1.91
RNF40O75150 AC104996.3-201ENST00000590718 94 ntBASIC3.1□□□□□ -1.91
RNF40O75150 AC009487.2-201ENST00000420969 6821 ntBASIC3.1□□□□□ -1.91
RNF40O75150 AC008163.1-202ENST00000636004 2889 ntBASIC3.1□□□□□ -1.91
RNF40O75150 RNU6-540P-201ENST00000384622 101 ntBASIC3.09□□□□□ -1.91
RNF40O75150 RNU6-587P-201ENST00000391282 106 ntBASIC3.09□□□□□ -1.91
RNF40O75150 AC104389.3-201ENST00000445629 235 ntBASIC3.09□□□□□ -1.91
RNF40O75150 RNA5SP445-201ENST00000515889 115 ntBASIC3.09□□□□□ -1.91
RNF40O75150 MIR664A-201ENST00000626086 82 ntBASIC3.09□□□□□ -1.91
RNF40O75150 MIR4251-201ENST00000635819 61 ntBASIC3.09□□□□□ -1.91
RNF40O75150 MACC1-202ENST00000400331 9159 ntAPPRIS P1 TSL 2 BASIC3.09□□□□□ -1.92
RNF40O75150 MYSM1-208ENST00000622766 6020 ntTSL 1 (best) BASIC3.08□□□□□ -1.92
RNF40O75150 RNU5F-1-201ENST00000362507 117 ntBASIC3.08□□□□□ -1.92
RNF40O75150 SNORD36A-201ENST00000362874 73 ntBASIC3.08□□□□□ -1.92
RNF40O75150 RNA5SP126-201ENST00000365092 109 ntBASIC3.08□□□□□ -1.92
RNF40O75150 MIR563-201ENST00000385080 79 ntBASIC3.08□□□□□ -1.92
RNF40O75150 RNA5SP465-201ENST00000391195 109 ntBASIC3.08□□□□□ -1.92
RNF40O75150 AC107016.2-201ENST00000547968 190 ntBASIC3.08□□□□□ -1.92
RNF40O75150 MIR3124-201ENST00000582636 67 ntBASIC3.08□□□□□ -1.92
RNF40O75150 Metazoa_SRP.32-201ENST00000622685 286 ntBASIC3.08□□□□□ -1.92
RNF40O75150 HAS2-201ENST00000303924 4190 ntAPPRIS P1 TSL 1 (best) BASIC3.08□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 191 ms