Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 MIR8087-201ENST00000612745 78 ntBASIC0.45□□□□□ -2.34
SDC3O75056 AL365265.1-201ENST00000621045 234 ntBASIC0.45□□□□□ -2.34
SDC3O75056 AC010332.2-201ENST00000613083 1904 ntBASIC0.44□□□□□ -2.34
SDC3O75056 MIR18A-201ENST00000362310 71 ntBASIC0.44□□□□□ -2.34
SDC3O75056 RNU6-1160P-201ENST00000384546 104 ntBASIC0.44□□□□□ -2.34
SDC3O75056 MIR140-201ENST00000385282 100 ntBASIC0.44□□□□□ -2.34
SDC3O75056 MIR938-201ENST00000401216 83 ntBASIC0.44□□□□□ -2.34
SDC3O75056 MIR548F4-201ENST00000408515 105 ntBASIC0.44□□□□□ -2.34
SDC3O75056 AP003072.1-201ENST00000531740 145 ntBASIC0.44□□□□□ -2.34
SDC3O75056 AC004148.1-201ENST00000571506 398 ntTSL 5 BASIC0.44□□□□□ -2.34
SDC3O75056 AC006504.6-201ENST00000590142 199 ntBASIC0.44□□□□□ -2.34
SDC3O75056 Y_RNA.23-201ENST00000362496 106 ntBASIC0.43□□□□□ -2.34
SDC3O75056 RNU6-653P-201ENST00000363074 106 ntBASIC0.43□□□□□ -2.34
SDC3O75056 Y_RNA.199-201ENST00000364014 102 ntBASIC0.43□□□□□ -2.34
SDC3O75056 Y_RNA.326-201ENST00000365176 113 ntBASIC0.43□□□□□ -2.34
SDC3O75056 SNORA1-201ENST00000384107 130 ntBASIC0.43□□□□□ -2.34
SDC3O75056 RNU6-472P-201ENST00000384299 107 ntBASIC0.43□□□□□ -2.34
SDC3O75056 Y_RNA.483-201ENST00000384380 101 ntBASIC0.43□□□□□ -2.34
SDC3O75056 Y_RNA.574-201ENST00000384766 95 ntBASIC0.43□□□□□ -2.34
SDC3O75056 MIR125B2-201ENST00000385128 89 ntBASIC0.43□□□□□ -2.34
SDC3O75056 MT-TF-201ENST00000387314 71 ntBASIC0.43□□□□□ -2.34
SDC3O75056 SNORA26.6-201ENST00000391256 115 ntBASIC0.43□□□□□ -2.34
SDC3O75056 RNU4-43P-201ENST00000410628 137 ntBASIC0.43□□□□□ -2.34
SDC3O75056 AL138752.1-201ENST00000452964 351 ntBASIC0.43□□□□□ -2.34
SDC3O75056 Y_RNA.679-201ENST00000516416 91 ntBASIC0.43□□□□□ -2.34
SDC3O75056 AL122017.1-202ENST00000570612 319 ntTSL 5 BASIC0.43□□□□□ -2.34
SDC3O75056 MIR3612-201ENST00000579753 87 ntBASIC0.43□□□□□ -2.34
SDC3O75056 MT-ATP8-201ENST00000361851 207 ntAPPRIS P1 BASIC0.42□□□□□ -2.34
SDC3O75056 RNU6-1309P-201ENST00000363305 108 ntBASIC0.42□□□□□ -2.34
SDC3O75056 SNORD18A-201ENST00000363753 72 ntBASIC0.42□□□□□ -2.34
SDC3O75056 Y_RNA.352-201ENST00000365439 102 ntBASIC0.42□□□□□ -2.34
SDC3O75056 VTRNA1-3-201ENST00000365645 89 ntBASIC0.42□□□□□ -2.34
SDC3O75056 RPS27-201ENST00000368567 350 ntAPPRIS P1 TSL 1 (best) BASIC0.42□□□□□ -2.34
SDC3O75056 RNU6-1292P-201ENST00000383856 107 ntBASIC0.42□□□□□ -2.34
SDC3O75056 Y_RNA.461-201ENST00000384263 103 ntBASIC0.42□□□□□ -2.34
SDC3O75056 MIR1197-201ENST00000408818 88 ntBASIC0.42□□□□□ -2.34
SDC3O75056 RNA5SP261-201ENST00000410536 106 ntBASIC0.42□□□□□ -2.34
SDC3O75056 RNU6-1190P-201ENST00000410811 104 ntBASIC0.42□□□□□ -2.34
SDC3O75056 RNU7-185P-201ENST00000459215 60 ntBASIC0.42□□□□□ -2.34
SDC3O75056 MTATP8P1-201ENST00000467115 207 ntBASIC0.42□□□□□ -2.34
SDC3O75056 AL442663.2-201ENST00000554385 511 ntBASIC0.42□□□□□ -2.34
SDC3O75056 MIR6717-201ENST00000622747 73 ntBASIC0.42□□□□□ -2.34
SDC3O75056 MIR30D-201ENST00000362283 70 ntBASIC0.41□□□□□ -2.34
SDC3O75056 Y_RNA.7-201ENST00000362352 102 ntBASIC0.41□□□□□ -2.34
SDC3O75056 RNU6-238P-201ENST00000363313 106 ntBASIC0.41□□□□□ -2.34
SDC3O75056 RNU6-728P-201ENST00000365375 104 ntBASIC0.41□□□□□ -2.34
SDC3O75056 RNU4-17P-201ENST00000365598 141 ntBASIC0.41□□□□□ -2.34
SDC3O75056 SNORD12C-201ENST00000386307 89 ntBASIC0.41□□□□□ -2.34
SDC3O75056 TRAJ2-201ENST00000390535 66 ntAPPRIS P1 BASIC0.41□□□□□ -2.34
SDC3O75056 SNORD100-201ENST00000408573 76 ntBASIC0.41□□□□□ -2.34
SDC3O75056 AL135790.1-201ENST00000427161 157 ntTSL 3 BASIC0.41□□□□□ -2.34
SDC3O75056 RNU7-80P-201ENST00000459562 61 ntBASIC0.41□□□□□ -2.34
SDC3O75056 AC090897.1-201ENST00000580909 226 ntBASIC0.41□□□□□ -2.34
SDC3O75056 MIR5197-201ENST00000583721 112 ntBASIC0.41□□□□□ -2.34
SDC3O75056 SNORD92-201ENST00000585078 85 ntBASIC0.41□□□□□ -2.34
SDC3O75056 AL365205.2-201ENST00000594586 68 ntBASIC0.41□□□□□ -2.34
SDC3O75056 MIR376A2-201ENST00000636782 80 ntBASIC0.41□□□□□ -2.34
SDC3O75056 MIR302B-201ENST00000362188 73 ntBASIC0.4□□□□□ -2.35
SDC3O75056 MIR330-201ENST00000362196 94 ntBASIC0.4□□□□□ -2.35
SDC3O75056 RNA5SP457-201ENST00000363657 124 ntBASIC0.4□□□□□ -2.35
SDC3O75056 RNU6-103P-201ENST00000363686 107 ntBASIC0.4□□□□□ -2.35
SDC3O75056 Y_RNA.262-201ENST00000364641 102 ntBASIC0.4□□□□□ -2.35
SDC3O75056 Y_RNA.351-201ENST00000365436 96 ntBASIC0.4□□□□□ -2.35
SDC3O75056 Y_RNA.416-201ENST00000384014 113 ntBASIC0.4□□□□□ -2.35
SDC3O75056 Y_RNA.430-201ENST00000384081 110 ntBASIC0.4□□□□□ -2.35
SDC3O75056 SNORA79-201ENST00000408376 140 ntBASIC0.4□□□□□ -2.35
SDC3O75056 MIR1257-201ENST00000408490 117 ntBASIC0.4□□□□□ -2.35
SDC3O75056 Y_RNA.618-201ENST00000410949 107 ntBASIC0.4□□□□□ -2.35
SDC3O75056 AC011921.3-201ENST00000605540 361 ntBASIC0.4□□□□□ -2.35
SDC3O75056 5S_rRNA.15-201ENST00000611169 127 ntBASIC0.4□□□□□ -2.35
SDC3O75056 AL109933.3-201ENST00000619095 188 ntBASIC0.4□□□□□ -2.35
SDC3O75056 MIR342-201ENST00000362212 99 ntBASIC0.39□□□□□ -2.35
SDC3O75056 Y_RNA.176-201ENST00000363815 109 ntBASIC0.39□□□□□ -2.35
SDC3O75056 Y_RNA.454-201ENST00000384224 113 ntBASIC0.39□□□□□ -2.35
SDC3O75056 RNU6-1319P-201ENST00000390855 104 ntBASIC0.39□□□□□ -2.35
SDC3O75056 RNU6-747P-201ENST00000390928 104 ntBASIC0.39□□□□□ -2.35
SDC3O75056 RNU6-241P-201ENST00000391148 104 ntBASIC0.39□□□□□ -2.35
SDC3O75056 RNU6-447P-201ENST00000410293 104 ntBASIC0.39□□□□□ -2.35
SDC3O75056 RNU6-1118P-201ENST00000410382 104 ntBASIC0.39□□□□□ -2.35
SDC3O75056 RNU6-1076P-201ENST00000410397 104 ntBASIC0.39□□□□□ -2.35
SDC3O75056 RNU6-355P-201ENST00000410427 104 ntBASIC0.39□□□□□ -2.35
SDC3O75056 RNU6-791P-201ENST00000410467 104 ntBASIC0.39□□□□□ -2.35
SDC3O75056 RNU6-705P-201ENST00000410601 104 ntBASIC0.39□□□□□ -2.35
SDC3O75056 RNU6-1100P-201ENST00000410691 104 ntBASIC0.39□□□□□ -2.35
SDC3O75056 RNU6-860P-201ENST00000410860 104 ntBASIC0.39□□□□□ -2.35
SDC3O75056 RNU6-1217P-201ENST00000411276 104 ntBASIC0.39□□□□□ -2.35
SDC3O75056 RNU6-785P-201ENST00000411324 104 ntBASIC0.39□□□□□ -2.35
SDC3O75056 RNU6-561P-201ENST00000516222 102 ntBASIC0.39□□□□□ -2.35
SDC3O75056 AL117187.1-201ENST00000555482 181 ntBASIC0.39□□□□□ -2.35
SDC3O75056 MIR4643-201ENST00000577473 78 ntBASIC0.39□□□□□ -2.35
SDC3O75056 MIR4514-201ENST00000581410 57 ntBASIC0.39□□□□□ -2.35
SDC3O75056 AL442067.1-201ENST00000613261 223 ntBASIC0.39□□□□□ -2.35
SDC3O75056 U6.90-201ENST00000614007 104 ntBASIC0.39□□□□□ -2.35
SDC3O75056 U6.70-201ENST00000620287 104 ntBASIC0.39□□□□□ -2.35
SDC3O75056 Y_RNA.145-201ENST00000363527 102 ntBASIC0.38□□□□□ -2.35
SDC3O75056 RNU6-364P-201ENST00000384387 107 ntBASIC0.38□□□□□ -2.35
SDC3O75056 RNU7-102P-201ENST00000458948 62 ntBASIC0.38□□□□□ -2.35
SDC3O75056 MIR3129-201ENST00000581095 76 ntBASIC0.38□□□□□ -2.35
SDC3O75056 Y_RNA.812-201ENST00000610788 101 ntBASIC0.38□□□□□ -2.35
SDC3O75056 Y_RNA.784-201ENST00000613803 101 ntBASIC0.38□□□□□ -2.35
Retrieved 100 of 98,524 protein–RNA pairs in 169.9 ms