Protein–RNA interactions for Protein: Q9Y6I4

USP3, Ubiquitin carboxyl-terminal hydrolase 3, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP3Q9Y6I4 RNU6-785P-201ENST00000411324 104 ntBASIC2.72□□□□□ -1.97
USP3Q9Y6I4 AL445685.2-201ENST00000422551 342 ntBASIC2.72□□□□□ -1.97
USP3Q9Y6I4 AC074131.1-201ENST00000514662 253 ntTSL 2 BASIC2.72□□□□□ -1.97
USP3Q9Y6I4 U6.90-201ENST00000614007 104 ntBASIC2.72□□□□□ -1.97
USP3Q9Y6I4 U6.70-201ENST00000620287 104 ntBASIC2.72□□□□□ -1.97
USP3Q9Y6I4 CLLU1-201ENST00000378485 3897 ntAPPRIS P1 TSL 1 (best) BASIC2.72□□□□□ -1.97
USP3Q9Y6I4 CEP57L1-216ENST00000521522 2259 ntTSL 5 BASIC2.71□□□□□ -1.98
USP3Q9Y6I4 RNU6-360P-201ENST00000390944 104 ntBASIC2.71□□□□□ -1.98
USP3Q9Y6I4 RNA5SP270-201ENST00000411361 118 ntBASIC2.71□□□□□ -1.98
USP3Q9Y6I4 UBE2DNL-203ENST00000474922 222 ntBASIC2.71□□□□□ -1.98
USP3Q9Y6I4 AC005336.3-201ENST00000623833 2679 ntBASIC2.71□□□□□ -1.98
USP3Q9Y6I4 ARHGAP28-204ENST00000419673 5492 ntAPPRIS P2 TSL 1 (best) BASIC2.7□□□□□ -1.98
USP3Q9Y6I4 RNU6-1124P-201ENST00000384169 107 ntBASIC2.7□□□□□ -1.98
USP3Q9Y6I4 Y_RNA.467-201ENST00000384297 102 ntBASIC2.7□□□□□ -1.98
USP3Q9Y6I4 RNU4ATAC16P-201ENST00000408512 126 ntBASIC2.7□□□□□ -1.98
USP3Q9Y6I4 AC090844.1-201ENST00000422019 156 ntBASIC2.7□□□□□ -1.98
USP3Q9Y6I4 AC245047.7-201ENST00000440265 293 ntBASIC2.7□□□□□ -1.98
USP3Q9Y6I4 MIR6817-201ENST00000615588 66 ntBASIC2.7□□□□□ -1.98
USP3Q9Y6I4 AC008133.2-201ENST00000624540 351 ntBASIC2.7□□□□□ -1.98
USP3Q9Y6I4 ZNF470-202ENST00000391709 6601 ntAPPRIS P1 TSL 5 BASIC2.69□□□□□ -1.98
USP3Q9Y6I4 Y_RNA.140-201ENST00000363474 103 ntBASIC2.69□□□□□ -1.98
USP3Q9Y6I4 RNU1-138P-201ENST00000384093 164 ntBASIC2.69□□□□□ -1.98
USP3Q9Y6I4 Y_RNA.500-201ENST00000384466 111 ntBASIC2.69□□□□□ -1.98
USP3Q9Y6I4 MIR206-201ENST00000384872 86 ntBASIC2.69□□□□□ -1.98
USP3Q9Y6I4 MIR27B-201ENST00000385129 97 ntBASIC2.69□□□□□ -1.98
USP3Q9Y6I4 U8.15-201ENST00000390947 134 ntBASIC2.69□□□□□ -1.98
USP3Q9Y6I4 RNU6-1086P-201ENST00000410930 100 ntBASIC2.69□□□□□ -1.98
USP3Q9Y6I4 RN7SL499P-201ENST00000481141 276 ntBASIC2.69□□□□□ -1.98
USP3Q9Y6I4 MIR8065-201ENST00000620577 100 ntBASIC2.69□□□□□ -1.98
USP3Q9Y6I4 SYTL2-230ENST00000634661 6672 ntTSL 5 BASIC2.69□□□□□ -1.98
USP3Q9Y6I4 NEBL-202ENST00000377122 9216 ntTSL 1 (best) BASIC2.68□□□□□ -1.98
USP3Q9Y6I4 AP000648.3-201ENST00000623539 4507 ntBASIC2.68□□□□□ -1.98
USP3Q9Y6I4 SNORD58A-201ENST00000383875 65 ntBASIC2.68□□□□□ -1.98
USP3Q9Y6I4 RNU6-402P-201ENST00000410678 103 ntBASIC2.68□□□□□ -1.98
USP3Q9Y6I4 RNA5SP492-201ENST00000411330 114 ntBASIC2.68□□□□□ -1.98
USP3Q9Y6I4 RNA5SP148-201ENST00000516527 94 ntBASIC2.68□□□□□ -1.98
USP3Q9Y6I4 RNU6-1006P-201ENST00000516998 103 ntBASIC2.68□□□□□ -1.98
USP3Q9Y6I4 CYP3A52P-201ENST00000563326 91 ntBASIC2.68□□□□□ -1.98
USP3Q9Y6I4 PNRC2-204ENST00000579103 171 ntTSL 2 BASIC2.68□□□□□ -1.98
USP3Q9Y6I4 CCPG1-203ENST00000442196 3453 ntAPPRIS P1 TSL 2 BASIC2.68□□□□□ -1.98
USP3Q9Y6I4 MYSM1-208ENST00000622766 6020 ntTSL 1 (best) BASIC2.67□□□□□ -1.98
USP3Q9Y6I4 RNU6-228P-201ENST00000362700 106 ntBASIC2.67□□□□□ -1.98
USP3Q9Y6I4 SNORD114-10-201ENST00000363409 72 ntBASIC2.67□□□□□ -1.98
USP3Q9Y6I4 RNU6-865P-201ENST00000364772 107 ntBASIC2.67□□□□□ -1.98
USP3Q9Y6I4 SNORD38.2-201ENST00000384470 69 ntBASIC2.67□□□□□ -1.98
USP3Q9Y6I4 RNA5SP210-201ENST00000391034 120 ntBASIC2.67□□□□□ -1.98
USP3Q9Y6I4 HMGN1P33-201ENST00000432945 451 ntBASIC2.67□□□□□ -1.98
USP3Q9Y6I4 RPS29P28-201ENST00000446439 141 ntBASIC2.67□□□□□ -1.98
USP3Q9Y6I4 RNA5SP320-201ENST00000516263 124 ntBASIC2.67□□□□□ -1.98
USP3Q9Y6I4 MIR4764-201ENST00000580680 88 ntBASIC2.67□□□□□ -1.98
USP3Q9Y6I4 MIR5588-201ENST00000581890 63 ntBASIC2.67□□□□□ -1.98
USP3Q9Y6I4 MIR376B-201ENST00000614515 100 ntBASIC2.67□□□□□ -1.98
USP3Q9Y6I4 AL161431.1-201ENST00000618966 4205 ntBASIC2.66□□□□□ -1.98
USP3Q9Y6I4 Y_RNA.190-201ENST00000363964 101 ntBASIC2.66□□□□□ -1.98
USP3Q9Y6I4 RNU6-219P-201ENST00000364728 107 ntBASIC2.66□□□□□ -1.98
USP3Q9Y6I4 RNU6-979P-201ENST00000383896 107 ntBASIC2.66□□□□□ -1.98
USP3Q9Y6I4 SNORA67.4-201ENST00000384688 142 ntBASIC2.66□□□□□ -1.98
USP3Q9Y6I4 AC011753.1-201ENST00000451001 220 ntBASIC2.66□□□□□ -1.98
USP3Q9Y6I4 RNU7-171P-201ENST00000459581 62 ntBASIC2.66□□□□□ -1.98
USP3Q9Y6I4 RNU6-322P-201ENST00000516010 103 ntBASIC2.66□□□□□ -1.98
USP3Q9Y6I4 MIR4668-201ENST00000582284 70 ntBASIC2.66□□□□□ -1.98
USP3Q9Y6I4 MIR4658-201ENST00000584344 65 ntBASIC2.66□□□□□ -1.98
USP3Q9Y6I4 U4.3-201ENST00000621047 82 ntBASIC2.66□□□□□ -1.98
USP3Q9Y6I4 WARS-244ENST00000627608 123 ntTSL 5 BASIC2.66□□□□□ -1.98
USP3Q9Y6I4 NEDD4-205ENST00000506154 6751 ntTSL 1 (best) BASIC2.66□□□□□ -1.98
USP3Q9Y6I4 RNU6-457P-201ENST00000363999 107 ntBASIC2.65□□□□□ -1.99
USP3Q9Y6I4 Y_RNA.426-201ENST00000384068 113 ntBASIC2.65□□□□□ -1.99
USP3Q9Y6I4 RNU6-342P-201ENST00000384521 104 ntBASIC2.65□□□□□ -1.99
USP3Q9Y6I4 RNA5SP100-201ENST00000410903 110 ntBASIC2.65□□□□□ -1.99
USP3Q9Y6I4 RNA5SP59-201ENST00000410922 110 ntBASIC2.65□□□□□ -1.99
USP3Q9Y6I4 Y_RNA.620-201ENST00000411009 88 ntBASIC2.65□□□□□ -1.99
USP3Q9Y6I4 RNA5SP395-201ENST00000516567 118 ntBASIC2.65□□□□□ -1.99
USP3Q9Y6I4 5S_rRNA.3-201ENST00000517021 110 ntBASIC2.65□□□□□ -1.99
USP3Q9Y6I4 MIR4529-201ENST00000578110 78 ntBASIC2.65□□□□□ -1.99
USP3Q9Y6I4 MIR5092-201ENST00000583139 88 ntBASIC2.65□□□□□ -1.99
USP3Q9Y6I4 SNORD14A-201ENST00000606526 91 ntBASIC2.65□□□□□ -1.99
USP3Q9Y6I4 5S_rRNA.19-201ENST00000612131 110 ntBASIC2.65□□□□□ -1.99
USP3Q9Y6I4 5S_rRNA.18-201ENST00000621941 110 ntBASIC2.65□□□□□ -1.99
USP3Q9Y6I4 ATP11C-202ENST00000361648 6010 ntAPPRIS ALT2 TSL 1 (best) BASIC2.64□□□□□ -1.99
USP3Q9Y6I4 RNA5SP456-201ENST00000364002 114 ntBASIC2.64□□□□□ -1.99
USP3Q9Y6I4 RNU6-497P-201ENST00000365316 104 ntBASIC2.64□□□□□ -1.99
USP3Q9Y6I4 MIR520C-201ENST00000385005 87 ntBASIC2.64□□□□□ -1.99
USP3Q9Y6I4 RNU6-602P-201ENST00000411155 105 ntBASIC2.64□□□□□ -1.99
USP3Q9Y6I4 UBL5P1-201ENST00000507979 193 ntBASIC2.64□□□□□ -1.99
USP3Q9Y6I4 HMSD-204ENST00000526932 162 ntTSL 3 BASIC2.64□□□□□ -1.99
USP3Q9Y6I4 SCN1A-219ENST00000641575 12874 ntAPPRIS ALT1 BASIC2.64□□□□□ -1.99
USP3Q9Y6I4 OR51A4-202ENST00000641898 4393 ntAPPRIS P1 BASIC2.63□□□□□ -1.99
USP3Q9Y6I4 PCDH11Y-201ENST00000215473 4595 ntAPPRIS ALT2 TSL 1 (best) BASIC2.63□□□□□ -1.99
USP3Q9Y6I4 MIR449A-201ENST00000362113 91 ntBASIC2.63□□□□□ -1.99
USP3Q9Y6I4 TRAJ26-201ENST00000390511 60 ntAPPRIS P1 BASIC2.63□□□□□ -1.99
USP3Q9Y6I4 AL513328.1-201ENST00000446460 224 ntBASIC2.63□□□□□ -1.99
USP3Q9Y6I4 RNU7-79P-201ENST00000516082 62 ntBASIC2.63□□□□□ -1.99
USP3Q9Y6I4 RNU6-826P-201ENST00000516827 104 ntBASIC2.63□□□□□ -1.99
USP3Q9Y6I4 MIR4666B-201ENST00000578142 81 ntBASIC2.63□□□□□ -1.99
USP3Q9Y6I4 WDR3-201ENST00000349139 9974 ntAPPRIS P1 TSL 1 (best) BASIC2.62□□□□□ -1.99
USP3Q9Y6I4 Y_RNA.73-201ENST00000362910 113 ntBASIC2.62□□□□□ -1.99
USP3Q9Y6I4 RNU6-90P-201ENST00000606352 106 ntBASIC2.62□□□□□ -1.99
USP3Q9Y6I4 AC103810.7-201ENST00000607821 91 ntBASIC2.62□□□□□ -1.99
USP3Q9Y6I4 Y_RNA.98-201ENST00000363109 102 ntBASIC2.61□□□□□ -1.99
USP3Q9Y6I4 RNU6-1163P-201ENST00000364516 107 ntBASIC2.61□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 129.7 ms