Protein–RNA interactions for Protein: Q9NZR4

VSX1, Visual system homeobox 1, humanhuman

Predicted RBP Predictions only

Length 365 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1Q9NZR4 Y_RNA.366-201ENST00000365540 102 ntBASIC1.64□□□□□ -2.15
VSX1Q9NZR4 SNORA70B-201ENST00000384210 135 ntBASIC1.64□□□□□ -2.15
VSX1Q9NZR4 RNU6-1064P-201ENST00000410626 104 ntBASIC1.64□□□□□ -2.15
VSX1Q9NZR4 AL022718.1-201ENST00000412004 84 ntBASIC1.64□□□□□ -2.15
VSX1Q9NZR4 HSPE1P24-201ENST00000450782 238 ntBASIC1.64□□□□□ -2.15
VSX1Q9NZR4 RPL39P39-201ENST00000455840 151 ntBASIC1.64□□□□□ -2.15
VSX1Q9NZR4 HMGN2P23-201ENST00000456759 269 ntBASIC1.64□□□□□ -2.15
VSX1Q9NZR4 IGHVII-40-1-201ENST00000517316 58 ntBASIC1.64□□□□□ -2.15
VSX1Q9NZR4 AC108081.1-201ENST00000604358 221 ntBASIC1.64□□□□□ -2.15
VSX1Q9NZR4 NEDD1-204ENST00000457368 3162 ntTSL 2 BASIC1.63□□□□□ -2.15
VSX1Q9NZR4 MIR302D-201ENST00000362275 68 ntBASIC1.63□□□□□ -2.15
VSX1Q9NZR4 Y_RNA.198-201ENST00000364013 98 ntBASIC1.63□□□□□ -2.15
VSX1Q9NZR4 Y_RNA.299-201ENST00000364973 94 ntBASIC1.63□□□□□ -2.15
VSX1Q9NZR4 Y_RNA.353-201ENST00000365440 108 ntBASIC1.63□□□□□ -2.15
VSX1Q9NZR4 RNU1-78P-201ENST00000391248 165 ntBASIC1.63□□□□□ -2.15
VSX1Q9NZR4 RNU6-735P-201ENST00000410612 107 ntBASIC1.63□□□□□ -2.15
VSX1Q9NZR4 AC073127.1-201ENST00000447336 333 ntTSL 3 BASIC1.63□□□□□ -2.15
VSX1Q9NZR4 AC004148.1-201ENST00000571506 398 ntTSL 5 BASIC1.63□□□□□ -2.15
VSX1Q9NZR4 MIR3945-201ENST00000581853 98 ntBASIC1.63□□□□□ -2.15
VSX1Q9NZR4 AL670379.3-201ENST00000605040 251 ntBASIC1.63□□□□□ -2.15
VSX1Q9NZR4 KTN1-205ENST00000395314 4618 ntAPPRIS P4 TSL 1 (best) BASIC1.63□□□□□ -2.15
VSX1Q9NZR4 KIAA1107-201ENST00000370378 4622 ntTSL 5 BASIC1.62□□□□□ -2.15
VSX1Q9NZR4 Y_RNA.213-201ENST00000364178 111 ntBASIC1.62□□□□□ -2.15
VSX1Q9NZR4 Y_RNA.298-201ENST00000364960 107 ntBASIC1.62□□□□□ -2.15
VSX1Q9NZR4 SNORD1A-201ENST00000364968 72 ntBASIC1.62□□□□□ -2.15
VSX1Q9NZR4 RNU6-1144P-201ENST00000384247 104 ntBASIC1.62□□□□□ -2.15
VSX1Q9NZR4 Y_RNA.528-201ENST00000384575 108 ntBASIC1.62□□□□□ -2.15
VSX1Q9NZR4 MIR934-201ENST00000401241 83 ntBASIC1.62□□□□□ -2.15
VSX1Q9NZR4 AC019129.1-201ENST00000403786 261 ntBASIC1.62□□□□□ -2.15
VSX1Q9NZR4 MIR1263-201ENST00000408324 86 ntBASIC1.62□□□□□ -2.15
VSX1Q9NZR4 AC245517.4-201ENST00000448601 281 ntBASIC1.62□□□□□ -2.15
VSX1Q9NZR4 RNU7-164P-201ENST00000459221 62 ntBASIC1.62□□□□□ -2.15
VSX1Q9NZR4 MIR4422-201ENST00000581938 83 ntBASIC1.62□□□□□ -2.15
VSX1Q9NZR4 AL020996.3-201ENST00000606617 222 ntBASIC1.62□□□□□ -2.15
VSX1Q9NZR4 MTND5P18-201ENST00000445624 1801 ntBASIC1.61□□□□□ -2.15
VSX1Q9NZR4 RNU6-997P-201ENST00000384725 107 ntBASIC1.61□□□□□ -2.15
VSX1Q9NZR4 RNU6-476P-201ENST00000384726 107 ntBASIC1.61□□□□□ -2.15
VSX1Q9NZR4 MIR548A3-201ENST00000385297 97 ntBASIC1.61□□□□□ -2.15
VSX1Q9NZR4 RNA5SP144-201ENST00000410846 116 ntBASIC1.61□□□□□ -2.15
VSX1Q9NZR4 RPS29P11-201ENST00000496507 171 ntBASIC1.61□□□□□ -2.15
VSX1Q9NZR4 RNA5SP182-201ENST00000516064 82 ntBASIC1.61□□□□□ -2.15
VSX1Q9NZR4 RNU6-781P-201ENST00000516377 101 ntBASIC1.61□□□□□ -2.15
VSX1Q9NZR4 SNORD111.1-201ENST00000516421 86 ntBASIC1.61□□□□□ -2.15
VSX1Q9NZR4 AC007991.3-201ENST00000517623 502 ntTSL 4 BASIC1.61□□□□□ -2.15
VSX1Q9NZR4 MIR4419B-201ENST00000577260 68 ntBASIC1.61□□□□□ -2.15
VSX1Q9NZR4 MIR4285-201ENST00000581001 85 ntBASIC1.61□□□□□ -2.15
VSX1Q9NZR4 AP001109.1-201ENST00000587114 279 ntTSL 3 BASIC1.61□□□□□ -2.15
VSX1Q9NZR4 MIR8055-201ENST00000610739 97 ntBASIC1.61□□□□□ -2.15
VSX1Q9NZR4 AL121890.5-201ENST00000620848 304 ntBASIC1.61□□□□□ -2.15
VSX1Q9NZR4 MIR8063-201ENST00000621930 81 ntBASIC1.61□□□□□ -2.15
VSX1Q9NZR4 MIR6717-201ENST00000622747 73 ntBASIC1.61□□□□□ -2.15
VSX1Q9NZR4 MIR4251-201ENST00000635819 61 ntBASIC1.61□□□□□ -2.15
VSX1Q9NZR4 NPAT-201ENST00000278612 6117 ntAPPRIS P2 TSL 1 (best) BASIC1.61□□□□□ -2.15
VSX1Q9NZR4 AP000648.3-201ENST00000623539 4507 ntBASIC1.61□□□□□ -2.15
VSX1Q9NZR4 RNY4P6-201ENST00000363667 96 ntBASIC1.6□□□□□ -2.15
VSX1Q9NZR4 MIR570-201ENST00000384917 97 ntBASIC1.6□□□□□ -2.15
VSX1Q9NZR4 SNORD41-201ENST00000386967 70 ntBASIC1.6□□□□□ -2.15
VSX1Q9NZR4 RPS3AP1-201ENST00000413190 320 ntBASIC1.6□□□□□ -2.15
VSX1Q9NZR4 AL133373.1-201ENST00000497098 94 ntBASIC1.6□□□□□ -2.15
VSX1Q9NZR4 IGKV1-22-201ENST00000524313 326 ntBASIC1.6□□□□□ -2.15
VSX1Q9NZR4 HOTAIRM1_4.1-201ENST00000617934 102 ntBASIC1.6□□□□□ -2.15
VSX1Q9NZR4 Z97988.1-201ENST00000637697 135 ntBASIC1.6□□□□□ -2.15
VSX1Q9NZR4 AC008781.2-201ENST00000502205 2480 ntTSL 1 (best) BASIC1.6□□□□□ -2.15
VSX1Q9NZR4 SNORD115-2-201ENST00000362842 82 ntBASIC1.59□□□□□ -2.15
VSX1Q9NZR4 SNORA1.1-201ENST00000364671 133 ntBASIC1.59□□□□□ -2.15
VSX1Q9NZR4 SNORD48-201ENST00000364953 64 ntBASIC1.59□□□□□ -2.15
VSX1Q9NZR4 SNORD115-20-201ENST00000365099 82 ntBASIC1.59□□□□□ -2.15
VSX1Q9NZR4 SNORA40.18-201ENST00000391200 128 ntBASIC1.59□□□□□ -2.15
VSX1Q9NZR4 AC027119.1-201ENST00000440877 241 ntBASIC1.59□□□□□ -2.15
VSX1Q9NZR4 RNU6-970P-201ENST00000516312 107 ntBASIC1.59□□□□□ -2.15
VSX1Q9NZR4 RNU6-922P-201ENST00000516753 99 ntBASIC1.59□□□□□ -2.15
VSX1Q9NZR4 AC024614.2-201ENST00000577584 372 ntBASIC1.59□□□□□ -2.15
VSX1Q9NZR4 MIR3618-201ENST00000580330 88 ntBASIC1.59□□□□□ -2.15
VSX1Q9NZR4 ZNRD1-AS1_3.8-201ENST00000611686 104 ntBASIC1.59□□□□□ -2.15
VSX1Q9NZR4 CEP57L1-216ENST00000521522 2259 ntTSL 5 BASIC1.58□□□□□ -2.16
VSX1Q9NZR4 SNORD114-1-201ENST00000362705 72 ntBASIC1.58□□□□□ -2.16
VSX1Q9NZR4 MIR9-3-201ENST00000385084 90 ntBASIC1.58□□□□□ -2.16
VSX1Q9NZR4 SNORA26.6-201ENST00000391256 115 ntBASIC1.58□□□□□ -2.16
VSX1Q9NZR4 MIR1289-2-201ENST00000408360 111 ntBASIC1.58□□□□□ -2.16
VSX1Q9NZR4 Y_RNA.649-201ENST00000459077 103 ntBASIC1.58□□□□□ -2.16
VSX1Q9NZR4 RNY4P20-201ENST00000516678 93 ntBASIC1.58□□□□□ -2.16
VSX1Q9NZR4 RNU11-2P-201ENST00000516898 142 ntBASIC1.58□□□□□ -2.16
VSX1Q9NZR4 TRAV1-1-201ENST00000542354 392 ntAPPRIS P1 BASIC1.58□□□□□ -2.16
VSX1Q9NZR4 AC068733.3-201ENST00000632757 269 ntTSL 3 BASIC1.58□□□□□ -2.16
VSX1Q9NZR4 MIR6841-201ENST00000637129 72 ntBASIC1.58□□□□□ -2.16
VSX1Q9NZR4 TEX15-203ENST00000638951 11341 ntAPPRIS P1 TSL 5 BASIC1.57□□□□□ -2.16
VSX1Q9NZR4 SNORA22.1-201ENST00000362701 134 ntBASIC1.57□□□□□ -2.16
VSX1Q9NZR4 Y_RNA.531-201ENST00000384589 121 ntBASIC1.57□□□□□ -2.16
VSX1Q9NZR4 RNU6-913P-201ENST00000390913 95 ntBASIC1.57□□□□□ -2.16
VSX1Q9NZR4 MIR1261-201ENST00000408659 82 ntBASIC1.57□□□□□ -2.16
VSX1Q9NZR4 Y_RNA.630-201ENST00000411370 108 ntBASIC1.57□□□□□ -2.16
VSX1Q9NZR4 POLR2J4-204ENST00000418424 324 ntBASIC1.57□□□□□ -2.16
VSX1Q9NZR4 RNU6-412P-201ENST00000516434 106 ntBASIC1.57□□□□□ -2.16
VSX1Q9NZR4 MIR4679-2-201ENST00000578358 77 ntBASIC1.57□□□□□ -2.16
VSX1Q9NZR4 MIR3937-201ENST00000580135 106 ntBASIC1.57□□□□□ -2.16
VSX1Q9NZR4 MIR3163-201ENST00000581592 73 ntBASIC1.57□□□□□ -2.16
VSX1Q9NZR4 Metazoa_SRP.32-201ENST00000622685 286 ntBASIC1.57□□□□□ -2.16
VSX1Q9NZR4 RNU6-880P-201ENST00000384526 107 ntBASIC1.56□□□□□ -2.16
VSX1Q9NZR4 SNORD38B-201ENST00000384690 67 ntBASIC1.56□□□□□ -2.16
VSX1Q9NZR4 RNA5SP445-201ENST00000515889 115 ntBASIC1.56□□□□□ -2.16
Retrieved 100 of 98,524 protein–RNA pairs in 187.1 ms