Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 AL020996.3-201ENST00000606617 222 ntBASIC0.87□□□□□ -2.27
CCDC28BQ9BUN5 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC0.87□□□□□ -2.27
CCDC28BQ9BUN5 ZNF260-205ENST00000593142 4047 ntAPPRIS P1 TSL 1 (best) BASIC0.86□□□□□ -2.27
CCDC28BQ9BUN5 SNORA25.7-201ENST00000364375 127 ntBASIC0.86□□□□□ -2.27
CCDC28BQ9BUN5 MIR146A-201ENST00000385201 99 ntBASIC0.86□□□□□ -2.27
CCDC28BQ9BUN5 MIR624-201ENST00000385217 97 ntBASIC0.86□□□□□ -2.27
CCDC28BQ9BUN5 MT-TN-201ENST00000387400 73 ntBASIC0.86□□□□□ -2.27
CCDC28BQ9BUN5 RNU6-613P-201ENST00000410412 108 ntBASIC0.86□□□□□ -2.27
CCDC28BQ9BUN5 RNA5SP127-201ENST00000411051 133 ntBASIC0.86□□□□□ -2.27
CCDC28BQ9BUN5 AC002429.1-201ENST00000437672 148 ntBASIC0.86□□□□□ -2.27
CCDC28BQ9BUN5 AC107027.2-201ENST00000512197 115 ntBASIC0.86□□□□□ -2.27
CCDC28BQ9BUN5 AC090155.2-201ENST00000518854 267 ntTSL 3 BASIC0.86□□□□□ -2.27
CCDC28BQ9BUN5 snoU13.31-201ENST00000607291 104 ntBASIC0.86□□□□□ -2.27
CCDC28BQ9BUN5 Y_RNA.240-201ENST00000364469 95 ntBASIC0.85□□□□□ -2.27
CCDC28BQ9BUN5 Y_RNA.454-201ENST00000384224 113 ntBASIC0.85□□□□□ -2.27
CCDC28BQ9BUN5 MIR200A-201ENST00000384875 90 ntBASIC0.85□□□□□ -2.27
CCDC28BQ9BUN5 AC006461.1-201ENST00000412637 326 ntBASIC0.85□□□□□ -2.27
CCDC28BQ9BUN5 AP1B1P2-201ENST00000416196 106 ntBASIC0.85□□□□□ -2.27
CCDC28BQ9BUN5 AL603825.1-201ENST00000438481 80 ntBASIC0.85□□□□□ -2.27
CCDC28BQ9BUN5 RNU7-80P-201ENST00000459562 61 ntBASIC0.85□□□□□ -2.27
CCDC28BQ9BUN5 NMTRQ-TTG12-1-201ENST00000467595 72 ntBASIC0.85□□□□□ -2.27
CCDC28BQ9BUN5 RNU4ATAC11P-201ENST00000515939 126 ntBASIC0.85□□□□□ -2.27
CCDC28BQ9BUN5 RNU6-1219P-201ENST00000516143 112 ntBASIC0.85□□□□□ -2.27
CCDC28BQ9BUN5 RNU6-958P-201ENST00000516995 106 ntBASIC0.85□□□□□ -2.27
CCDC28BQ9BUN5 SNORA81.3-201ENST00000517283 198 ntBASIC0.85□□□□□ -2.27
CCDC28BQ9BUN5 ZFAT-AS1_2.1-201ENST00000613742 201 ntBASIC0.85□□□□□ -2.27
CCDC28BQ9BUN5 AC008163.1-202ENST00000636004 2889 ntBASIC0.84□□□□□ -2.27
CCDC28BQ9BUN5 MIR377-201ENST00000362145 69 ntBASIC0.84□□□□□ -2.27
CCDC28BQ9BUN5 SNORD114-2-201ENST00000363953 78 ntBASIC0.84□□□□□ -2.27
CCDC28BQ9BUN5 Y_RNA.337-201ENST00000365312 102 ntBASIC0.84□□□□□ -2.27
CCDC28BQ9BUN5 Y_RNA.393-201ENST00000383936 102 ntBASIC0.84□□□□□ -2.27
CCDC28BQ9BUN5 POLR2J4-204ENST00000418424 324 ntBASIC0.84□□□□□ -2.27
CCDC28BQ9BUN5 MIR4498-201ENST00000577599 66 ntBASIC0.84□□□□□ -2.27
CCDC28BQ9BUN5 AC013244.2-201ENST00000603396 103 ntBASIC0.84□□□□□ -2.27
CCDC28BQ9BUN5 MIR8055-201ENST00000610739 97 ntBASIC0.84□□□□□ -2.27
CCDC28BQ9BUN5 MIR6516-201ENST00000630554 81 ntBASIC0.84□□□□□ -2.27
CCDC28BQ9BUN5 ANGPTL3-201ENST00000371129 2805 ntAPPRIS P1 TSL 1 (best) BASIC0.84□□□□□ -2.28
CCDC28BQ9BUN5 MIR337-201ENST00000362281 93 ntBASIC0.83□□□□□ -2.28
CCDC28BQ9BUN5 RNU1-36P-201ENST00000365130 165 ntBASIC0.83□□□□□ -2.28
CCDC28BQ9BUN5 Y_RNA.357-201ENST00000365487 109 ntBASIC0.83□□□□□ -2.28
CCDC28BQ9BUN5 Y_RNA.521-201ENST00000384560 114 ntBASIC0.83□□□□□ -2.28
CCDC28BQ9BUN5 SEPT7P4-201ENST00000437076 306 ntBASIC0.83□□□□□ -2.28
CCDC28BQ9BUN5 RNU2-11P-201ENST00000459191 187 ntBASIC0.83□□□□□ -2.28
CCDC28BQ9BUN5 RNU6-1053P-201ENST00000515930 101 ntBASIC0.83□□□□□ -2.28
CCDC28BQ9BUN5 RNU6-351P-201ENST00000516097 100 ntBASIC0.83□□□□□ -2.28
CCDC28BQ9BUN5 RNU6-794P-201ENST00000517261 64 ntBASIC0.83□□□□□ -2.28
CCDC28BQ9BUN5 AC022559.1-201ENST00000520905 205 ntBASIC0.83□□□□□ -2.28
CCDC28BQ9BUN5 AC009093.3-203ENST00000565800 121 ntTSL 2 BASIC0.83□□□□□ -2.28
CCDC28BQ9BUN5 MIR4661-201ENST00000582720 75 ntBASIC0.83□□□□□ -2.28
CCDC28BQ9BUN5 MIR376A2-201ENST00000636782 80 ntBASIC0.83□□□□□ -2.28
CCDC28BQ9BUN5 Z97988.1-201ENST00000637697 135 ntBASIC0.83□□□□□ -2.28
CCDC28BQ9BUN5 FAM135A-203ENST00000370479 5930 ntTSL 1 (best) BASIC0.82□□□□□ -2.28
CCDC28BQ9BUN5 RNU4-84P-201ENST00000364200 139 ntBASIC0.82□□□□□ -2.28
CCDC28BQ9BUN5 Y_RNA.330-201ENST00000365230 109 ntBASIC0.82□□□□□ -2.28
CCDC28BQ9BUN5 Y_RNA.351-201ENST00000365436 96 ntBASIC0.82□□□□□ -2.28
CCDC28BQ9BUN5 MIR532-201ENST00000385025 91 ntBASIC0.82□□□□□ -2.28
CCDC28BQ9BUN5 RNU6-913P-201ENST00000390913 95 ntBASIC0.82□□□□□ -2.28
CCDC28BQ9BUN5 RNU6-239P-201ENST00000390990 99 ntBASIC0.82□□□□□ -2.28
CCDC28BQ9BUN5 SNORD111-201ENST00000408139 94 ntBASIC0.82□□□□□ -2.28
CCDC28BQ9BUN5 MIR548I3-201ENST00000408378 149 ntBASIC0.82□□□□□ -2.28
CCDC28BQ9BUN5 RNA5SP261-201ENST00000410536 106 ntBASIC0.82□□□□□ -2.28
CCDC28BQ9BUN5 Y_RNA.662-201ENST00000516028 97 ntBASIC0.82□□□□□ -2.28
CCDC28BQ9BUN5 RNU6-182P-201ENST00000516970 105 ntBASIC0.82□□□□□ -2.28
CCDC28BQ9BUN5 MIR3646-201ENST00000578301 84 ntBASIC0.82□□□□□ -2.28
CCDC28BQ9BUN5 PNRC2-204ENST00000579103 171 ntTSL 2 BASIC0.82□□□□□ -2.28
CCDC28BQ9BUN5 MIR4264-201ENST00000583520 66 ntBASIC0.82□□□□□ -2.28
CCDC28BQ9BUN5 FAM71BP1-201ENST00000604431 523 ntBASIC0.82□□□□□ -2.28
CCDC28BQ9BUN5 AC004792.1-201ENST00000614523 137 ntBASIC0.82□□□□□ -2.28
CCDC28BQ9BUN5 AC106800.4-201ENST00000614905 153 ntBASIC0.82□□□□□ -2.28
CCDC28BQ9BUN5 TEX15-201ENST00000256246 10110 ntTSL 1 (best) BASIC0.82□□□□□ -2.28
CCDC28BQ9BUN5 MIR302B-201ENST00000362188 73 ntBASIC0.81□□□□□ -2.28
CCDC28BQ9BUN5 Y_RNA.168-201ENST00000363740 102 ntBASIC0.81□□□□□ -2.28
CCDC28BQ9BUN5 SNORD113.3-201ENST00000364630 78 ntBASIC0.81□□□□□ -2.28
CCDC28BQ9BUN5 RNU6-1135P-201ENST00000411083 103 ntBASIC0.81□□□□□ -2.28
CCDC28BQ9BUN5 DIP2A-IT1-201ENST00000442434 428 ntTSL 2 BASIC0.81□□□□□ -2.28
CCDC28BQ9BUN5 RNU7-121P-201ENST00000516604 62 ntBASIC0.81□□□□□ -2.28
CCDC28BQ9BUN5 IGHVIII-67-2-201ENST00000519849 88 ntBASIC0.81□□□□□ -2.28
CCDC28BQ9BUN5 AC036111.3-201ENST00000526389 112 ntBASIC0.81□□□□□ -2.28
CCDC28BQ9BUN5 AC010177.1-201ENST00000547819 366 ntTSL 3 BASIC0.81□□□□□ -2.28
CCDC28BQ9BUN5 AC131055.1-201ENST00000584626 316 ntBASIC0.81□□□□□ -2.28
CCDC28BQ9BUN5 MIR4653-201ENST00000585107 83 ntBASIC0.81□□□□□ -2.28
CCDC28BQ9BUN5 AP000753.3-201ENST00000604083 169 ntBASIC0.81□□□□□ -2.28
CCDC28BQ9BUN5 DLEU2_5.2-201ENST00000610606 84 ntBASIC0.81□□□□□ -2.28
CCDC28BQ9BUN5 ZNF518A-209ENST00000614149 7911 ntAPPRIS P1 TSL 5 BASIC0.8□□□□□ -2.28
CCDC28BQ9BUN5 RNU6-682P-201ENST00000363843 106 ntBASIC0.8□□□□□ -2.28
CCDC28BQ9BUN5 SNORA1.1-201ENST00000364671 133 ntBASIC0.8□□□□□ -2.28
CCDC28BQ9BUN5 SNORD114-24-201ENST00000365029 72 ntBASIC0.8□□□□□ -2.28
CCDC28BQ9BUN5 RNU6-580P-201ENST00000365159 107 ntBASIC0.8□□□□□ -2.28
CCDC28BQ9BUN5 RNU6-1318P-201ENST00000365389 103 ntBASIC0.8□□□□□ -2.28
CCDC28BQ9BUN5 Y_RNA.441-201ENST00000384123 112 ntBASIC0.8□□□□□ -2.28
CCDC28BQ9BUN5 RNU6-768P-201ENST00000384683 107 ntBASIC0.8□□□□□ -2.28
CCDC28BQ9BUN5 SNORD38B-201ENST00000384690 67 ntBASIC0.8□□□□□ -2.28
CCDC28BQ9BUN5 SNORA75.5-201ENST00000391291 81 ntBASIC0.8□□□□□ -2.28
CCDC28BQ9BUN5 FABP5P4-201ENST00000437203 171 ntBASIC0.8□□□□□ -2.28
CCDC28BQ9BUN5 RNU6-861P-201ENST00000516745 106 ntBASIC0.8□□□□□ -2.28
CCDC28BQ9BUN5 SCARNA15-202ENST00000516881 127 ntBASIC0.8□□□□□ -2.28
CCDC28BQ9BUN5 RNU7-70P-201ENST00000516941 66 ntBASIC0.8□□□□□ -2.28
CCDC28BQ9BUN5 AC211469.2-201ENST00000605461 205 ntBASIC0.8□□□□□ -2.28
CCDC28BQ9BUN5 AL359821.1-201ENST00000605519 182 ntBASIC0.8□□□□□ -2.28
CCDC28BQ9BUN5 AC091932.4-201ENST00000623386 200 ntBASIC0.8□□□□□ -2.28
Retrieved 100 of 98,524 protein–RNA pairs in 388.4 ms