Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 AL020996.3-201ENST00000606617 222 ntBASIC0.87□□□□□ -2.27
CCDC28BQ9BUN5 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC0.87□□□□□ -2.27
CCDC28BQ9BUN5 ZNF260-205ENST00000593142 4047 ntAPPRIS P1 TSL 1 (best) BASIC0.86□□□□□ -2.27
CCDC28BQ9BUN5 SNORA25.7-201ENST00000364375 127 ntBASIC0.86□□□□□ -2.27
CCDC28BQ9BUN5 MIR146A-201ENST00000385201 99 ntBASIC0.86□□□□□ -2.27
CCDC28BQ9BUN5 MIR624-201ENST00000385217 97 ntBASIC0.86□□□□□ -2.27
CCDC28BQ9BUN5 MT-TN-201ENST00000387400 73 ntBASIC0.86□□□□□ -2.27
CCDC28BQ9BUN5 RNU6-613P-201ENST00000410412 108 ntBASIC0.86□□□□□ -2.27
CCDC28BQ9BUN5 RNA5SP127-201ENST00000411051 133 ntBASIC0.86□□□□□ -2.27
CCDC28BQ9BUN5 AC002429.1-201ENST00000437672 148 ntBASIC0.86□□□□□ -2.27
CCDC28BQ9BUN5 AC107027.2-201ENST00000512197 115 ntBASIC0.86□□□□□ -2.27
CCDC28BQ9BUN5 AC090155.2-201ENST00000518854 267 ntTSL 3 BASIC0.86□□□□□ -2.27
CCDC28BQ9BUN5 snoU13.31-201ENST00000607291 104 ntBASIC0.86□□□□□ -2.27
CCDC28BQ9BUN5 Y_RNA.240-201ENST00000364469 95 ntBASIC0.85□□□□□ -2.27
CCDC28BQ9BUN5 Y_RNA.454-201ENST00000384224 113 ntBASIC0.85□□□□□ -2.27
CCDC28BQ9BUN5 MIR200A-201ENST00000384875 90 ntBASIC0.85□□□□□ -2.27
CCDC28BQ9BUN5 AC006461.1-201ENST00000412637 326 ntBASIC0.85□□□□□ -2.27
CCDC28BQ9BUN5 AP1B1P2-201ENST00000416196 106 ntBASIC0.85□□□□□ -2.27
CCDC28BQ9BUN5 AL603825.1-201ENST00000438481 80 ntBASIC0.85□□□□□ -2.27
CCDC28BQ9BUN5 RNU7-80P-201ENST00000459562 61 ntBASIC0.85□□□□□ -2.27
CCDC28BQ9BUN5 NMTRQ-TTG12-1-201ENST00000467595 72 ntBASIC0.85□□□□□ -2.27
CCDC28BQ9BUN5 RNU4ATAC11P-201ENST00000515939 126 ntBASIC0.85□□□□□ -2.27
CCDC28BQ9BUN5 RNU6-1219P-201ENST00000516143 112 ntBASIC0.85□□□□□ -2.27
CCDC28BQ9BUN5 RNU6-958P-201ENST00000516995 106 ntBASIC0.85□□□□□ -2.27
CCDC28BQ9BUN5 SNORA81.3-201ENST00000517283 198 ntBASIC0.85□□□□□ -2.27
CCDC28BQ9BUN5 ZFAT-AS1_2.1-201ENST00000613742 201 ntBASIC0.85□□□□□ -2.27
CCDC28BQ9BUN5 AC008163.1-202ENST00000636004 2889 ntBASIC0.84□□□□□ -2.27
CCDC28BQ9BUN5 MIR377-201ENST00000362145 69 ntBASIC0.84□□□□□ -2.27
CCDC28BQ9BUN5 SNORD114-2-201ENST00000363953 78 ntBASIC0.84□□□□□ -2.27
CCDC28BQ9BUN5 Y_RNA.337-201ENST00000365312 102 ntBASIC0.84□□□□□ -2.27
CCDC28BQ9BUN5 Y_RNA.393-201ENST00000383936 102 ntBASIC0.84□□□□□ -2.27
CCDC28BQ9BUN5 POLR2J4-204ENST00000418424 324 ntBASIC0.84□□□□□ -2.27
CCDC28BQ9BUN5 MIR4498-201ENST00000577599 66 ntBASIC0.84□□□□□ -2.27
CCDC28BQ9BUN5 AC013244.2-201ENST00000603396 103 ntBASIC0.84□□□□□ -2.27
CCDC28BQ9BUN5 MIR8055-201ENST00000610739 97 ntBASIC0.84□□□□□ -2.27
CCDC28BQ9BUN5 MIR6516-201ENST00000630554 81 ntBASIC0.84□□□□□ -2.27
CCDC28BQ9BUN5 ANGPTL3-201ENST00000371129 2805 ntAPPRIS P1 TSL 1 (best) BASIC0.84□□□□□ -2.28
CCDC28BQ9BUN5 MIR337-201ENST00000362281 93 ntBASIC0.83□□□□□ -2.28
CCDC28BQ9BUN5 RNU1-36P-201ENST00000365130 165 ntBASIC0.83□□□□□ -2.28
CCDC28BQ9BUN5 Y_RNA.357-201ENST00000365487 109 ntBASIC0.83□□□□□ -2.28
CCDC28BQ9BUN5 Y_RNA.521-201ENST00000384560 114 ntBASIC0.83□□□□□ -2.28
CCDC28BQ9BUN5 SEPT7P4-201ENST00000437076 306 ntBASIC0.83□□□□□ -2.28
CCDC28BQ9BUN5 RNU2-11P-201ENST00000459191 187 ntBASIC0.83□□□□□ -2.28
CCDC28BQ9BUN5 RNU6-1053P-201ENST00000515930 101 ntBASIC0.83□□□□□ -2.28
CCDC28BQ9BUN5 RNU6-351P-201ENST00000516097 100 ntBASIC0.83□□□□□ -2.28
CCDC28BQ9BUN5 RNU6-794P-201ENST00000517261 64 ntBASIC0.83□□□□□ -2.28
CCDC28BQ9BUN5 AC022559.1-201ENST00000520905 205 ntBASIC0.83□□□□□ -2.28
CCDC28BQ9BUN5 AC009093.3-203ENST00000565800 121 ntTSL 2 BASIC0.83□□□□□ -2.28
CCDC28BQ9BUN5 MIR4661-201ENST00000582720 75 ntBASIC0.83□□□□□ -2.28
CCDC28BQ9BUN5 MIR376A2-201ENST00000636782 80 ntBASIC0.83□□□□□ -2.28
CCDC28BQ9BUN5 Z97988.1-201ENST00000637697 135 ntBASIC0.83□□□□□ -2.28
CCDC28BQ9BUN5 FAM135A-203ENST00000370479 5930 ntTSL 1 (best) BASIC0.82□□□□□ -2.28
CCDC28BQ9BUN5 RNU4-84P-201ENST00000364200 139 ntBASIC0.82□□□□□ -2.28
CCDC28BQ9BUN5 Y_RNA.330-201ENST00000365230 109 ntBASIC0.82□□□□□ -2.28
CCDC28BQ9BUN5 Y_RNA.351-201ENST00000365436 96 ntBASIC0.82□□□□□ -2.28
CCDC28BQ9BUN5 MIR532-201ENST00000385025 91 ntBASIC0.82□□□□□ -2.28
CCDC28BQ9BUN5 RNU6-913P-201ENST00000390913 95 ntBASIC0.82□□□□□ -2.28
CCDC28BQ9BUN5 RNU6-239P-201ENST00000390990 99 ntBASIC0.82□□□□□ -2.28
CCDC28BQ9BUN5 SNORD111-201ENST00000408139 94 ntBASIC0.82□□□□□ -2.28
CCDC28BQ9BUN5 MIR548I3-201ENST00000408378 149 ntBASIC0.82□□□□□ -2.28
CCDC28BQ9BUN5 RNA5SP261-201ENST00000410536 106 ntBASIC0.82□□□□□ -2.28
CCDC28BQ9BUN5 Y_RNA.662-201ENST00000516028 97 ntBASIC0.82□□□□□ -2.28
CCDC28BQ9BUN5 RNU6-182P-201ENST00000516970 105 ntBASIC0.82□□□□□ -2.28
CCDC28BQ9BUN5 MIR3646-201ENST00000578301 84 ntBASIC0.82□□□□□ -2.28
CCDC28BQ9BUN5 PNRC2-204ENST00000579103 171 ntTSL 2 BASIC0.82□□□□□ -2.28
CCDC28BQ9BUN5 MIR4264-201ENST00000583520 66 ntBASIC0.82□□□□□ -2.28
CCDC28BQ9BUN5 FAM71BP1-201ENST00000604431 523 ntBASIC0.82□□□□□ -2.28
CCDC28BQ9BUN5 AC004792.1-201ENST00000614523 137 ntBASIC0.82□□□□□ -2.28
CCDC28BQ9BUN5 AC106800.4-201ENST00000614905 153 ntBASIC0.82□□□□□ -2.28
CCDC28BQ9BUN5 TEX15-201ENST00000256246 10110 ntTSL 1 (best) BASIC0.82□□□□□ -2.28
CCDC28BQ9BUN5 MIR302B-201ENST00000362188 73 ntBASIC0.81□□□□□ -2.28
CCDC28BQ9BUN5 Y_RNA.168-201ENST00000363740 102 ntBASIC0.81□□□□□ -2.28
CCDC28BQ9BUN5 SNORD113.3-201ENST00000364630 78 ntBASIC0.81□□□□□ -2.28
CCDC28BQ9BUN5 RNU6-1135P-201ENST00000411083 103 ntBASIC0.81□□□□□ -2.28
CCDC28BQ9BUN5 DIP2A-IT1-201ENST00000442434 428 ntTSL 2 BASIC0.81□□□□□ -2.28
CCDC28BQ9BUN5 RNU7-121P-201ENST00000516604 62 ntBASIC0.81□□□□□ -2.28
CCDC28BQ9BUN5 IGHVIII-67-2-201ENST00000519849 88 ntBASIC0.81□□□□□ -2.28
CCDC28BQ9BUN5 AC036111.3-201ENST00000526389 112 ntBASIC0.81□□□□□ -2.28
CCDC28BQ9BUN5 AC010177.1-201ENST00000547819 366 ntTSL 3 BASIC0.81□□□□□ -2.28
CCDC28BQ9BUN5 AC131055.1-201ENST00000584626 316 ntBASIC0.81□□□□□ -2.28
CCDC28BQ9BUN5 MIR4653-201ENST00000585107 83 ntBASIC0.81□□□□□ -2.28
CCDC28BQ9BUN5 AP000753.3-201ENST00000604083 169 ntBASIC0.81□□□□□ -2.28
CCDC28BQ9BUN5 DLEU2_5.2-201ENST00000610606 84 ntBASIC0.81□□□□□ -2.28
CCDC28BQ9BUN5 ZNF518A-209ENST00000614149 7911 ntAPPRIS P1 TSL 5 BASIC0.8□□□□□ -2.28
CCDC28BQ9BUN5 RNU6-682P-201ENST00000363843 106 ntBASIC0.8□□□□□ -2.28
CCDC28BQ9BUN5 SNORA1.1-201ENST00000364671 133 ntBASIC0.8□□□□□ -2.28
CCDC28BQ9BUN5 SNORD114-24-201ENST00000365029 72 ntBASIC0.8□□□□□ -2.28
CCDC28BQ9BUN5 RNU6-580P-201ENST00000365159 107 ntBASIC0.8□□□□□ -2.28
CCDC28BQ9BUN5 RNU6-1318P-201ENST00000365389 103 ntBASIC0.8□□□□□ -2.28
CCDC28BQ9BUN5 Y_RNA.441-201ENST00000384123 112 ntBASIC0.8□□□□□ -2.28
CCDC28BQ9BUN5 RNU6-768P-201ENST00000384683 107 ntBASIC0.8□□□□□ -2.28
CCDC28BQ9BUN5 SNORD38B-201ENST00000384690 67 ntBASIC0.8□□□□□ -2.28
CCDC28BQ9BUN5 SNORA75.5-201ENST00000391291 81 ntBASIC0.8□□□□□ -2.28
CCDC28BQ9BUN5 FABP5P4-201ENST00000437203 171 ntBASIC0.8□□□□□ -2.28
CCDC28BQ9BUN5 RNU6-861P-201ENST00000516745 106 ntBASIC0.8□□□□□ -2.28
CCDC28BQ9BUN5 SCARNA15-202ENST00000516881 127 ntBASIC0.8□□□□□ -2.28
CCDC28BQ9BUN5 RNU7-70P-201ENST00000516941 66 ntBASIC0.8□□□□□ -2.28
CCDC28BQ9BUN5 AC211469.2-201ENST00000605461 205 ntBASIC0.8□□□□□ -2.28
CCDC28BQ9BUN5 AL359821.1-201ENST00000605519 182 ntBASIC0.8□□□□□ -2.28
CCDC28BQ9BUN5 AC091932.4-201ENST00000623386 200 ntBASIC0.8□□□□□ -2.28
Retrieved 100 of 98,524 protein–RNA pairs in 166.6 ms