Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 RNU6-144P-201ENST00000383951 107 ntBASIC-1.34□□□□□ -2.62
CCDC42Q96M95 MIR626-201ENST00000385032 94 ntBASIC-1.34□□□□□ -2.62
CCDC42Q96M95 RNU6-1148P-201ENST00000410992 104 ntBASIC-1.34□□□□□ -2.62
CCDC42Q96M95 AL353742.1-201ENST00000453455 224 ntTSL 3 BASIC-1.34□□□□□ -2.62
CCDC42Q96M95 RNU6-1270P-201ENST00000517128 108 ntBASIC-1.34□□□□□ -2.62
CCDC42Q96M95 AC100767.1-201ENST00000528178 123 ntBASIC-1.34□□□□□ -2.62
CCDC42Q96M95 AC119751.7-201ENST00000600494 245 ntBASIC-1.34□□□□□ -2.62
CCDC42Q96M95 AC063944.3-201ENST00000609969 533 ntBASIC-1.34□□□□□ -2.62
CCDC42Q96M95 TPTEP1-208ENST00000636884 213 ntBASIC-1.34□□□□□ -2.62
CCDC42Q96M95 MIR1321-201ENST00000637766 79 ntBASIC-1.34□□□□□ -2.62
CCDC42Q96M95 Y_RNA.77-201ENST00000362962 107 ntBASIC-1.35□□□□□ -2.63
CCDC42Q96M95 SNORD95.1-201ENST00000364099 68 ntBASIC-1.35□□□□□ -2.63
CCDC42Q96M95 RNU6-1189P-201ENST00000383958 107 ntBASIC-1.35□□□□□ -2.63
CCDC42Q96M95 RNU6-259P-201ENST00000383999 107 ntBASIC-1.35□□□□□ -2.63
CCDC42Q96M95 RNU6-1042P-201ENST00000384204 107 ntBASIC-1.35□□□□□ -2.63
CCDC42Q96M95 RNY1P7-201ENST00000384743 110 ntBASIC-1.35□□□□□ -2.63
CCDC42Q96M95 Y_RNA.577-201ENST00000384794 101 ntBASIC-1.35□□□□□ -2.63
CCDC42Q96M95 RNU6-1086P-201ENST00000410930 100 ntBASIC-1.35□□□□□ -2.63
CCDC42Q96M95 RNU6-126P-201ENST00000516685 103 ntBASIC-1.35□□□□□ -2.63
CCDC42Q96M95 MIR3145-201ENST00000580727 82 ntBASIC-1.35□□□□□ -2.63
CCDC42Q96M95 AC099654.14-201ENST00000638599 341 ntBASIC-1.35□□□□□ -2.63
CCDC42Q96M95 RNA5SP133-201ENST00000363368 119 ntBASIC-1.36□□□□□ -2.63
CCDC42Q96M95 RNA5SP368-201ENST00000364298 116 ntBASIC-1.36□□□□□ -2.63
CCDC42Q96M95 Y_RNA.404-201ENST00000383978 102 ntBASIC-1.36□□□□□ -2.63
CCDC42Q96M95 SNORA18-201ENST00000384416 132 ntBASIC-1.36□□□□□ -2.63
CCDC42Q96M95 TRAJ1-201ENST00000390536 62 ntAPPRIS P1 BASIC-1.36□□□□□ -2.63
CCDC42Q96M95 Y_RNA.682-201ENST00000516457 100 ntBASIC-1.36□□□□□ -2.63
CCDC42Q96M95 MIR3681-201ENST00000580089 72 ntBASIC-1.36□□□□□ -2.63
CCDC42Q96M95 MIR6841-201ENST00000637129 72 ntBASIC-1.36□□□□□ -2.63
CCDC42Q96M95 RNU6-899P-201ENST00000363947 107 ntBASIC-1.37□□□□□ -2.63
CCDC42Q96M95 RNU6-308P-201ENST00000390957 107 ntBASIC-1.37□□□□□ -2.63
CCDC42Q96M95 DEFB108C-201ENST00000400154 252 ntBASIC-1.37□□□□□ -2.63
CCDC42Q96M95 Y_RNA.637-201ENST00000459424 114 ntBASIC-1.37□□□□□ -2.63
CCDC42Q96M95 PLS1-AS1-201ENST00000485338 346 ntTSL 3 BASIC-1.37□□□□□ -2.63
CCDC42Q96M95 RNU7-188P-201ENST00000517063 64 ntBASIC-1.37□□□□□ -2.63
CCDC42Q96M95 RNU6-365P-201ENST00000517113 106 ntBASIC-1.37□□□□□ -2.63
CCDC42Q96M95 AP001328.1-201ENST00000528550 176 ntBASIC-1.37□□□□□ -2.63
CCDC42Q96M95 AC011825.2-201ENST00000583138 553 ntTSL 4 BASIC-1.37□□□□□ -2.63
CCDC42Q96M95 Y_RNA.351-201ENST00000365436 96 ntBASIC-1.38□□□□□ -2.63
CCDC42Q96M95 RNU6ATAC19P-201ENST00000408096 110 ntBASIC-1.38□□□□□ -2.63
CCDC42Q96M95 MTND3P10-201ENST00000450967 341 ntBASIC-1.38□□□□□ -2.63
CCDC42Q96M95 AC144568.1-201ENST00000520139 137 ntBASIC-1.38□□□□□ -2.63
CCDC42Q96M95 Y_RNA.371-201ENST00000365591 113 ntBASIC-1.39□□□□□ -2.63
CCDC42Q96M95 RNU6-1119P-201ENST00000384349 108 ntBASIC-1.39□□□□□ -2.63
CCDC42Q96M95 RNU6-455P-201ENST00000384681 107 ntBASIC-1.39□□□□□ -2.63
CCDC42Q96M95 RNA5SP169-201ENST00000517268 117 ntBASIC-1.39□□□□□ -2.63
CCDC42Q96M95 AC006362.1-201ENST00000567392 174 ntBASIC-1.39□□□□□ -2.63
CCDC42Q96M95 Y_RNA.14-201ENST00000362415 103 ntBASIC-1.4□□□□□ -2.63
CCDC42Q96M95 Y_RNA.274-201ENST00000364714 101 ntBASIC-1.4□□□□□ -2.63
CCDC42Q96M95 Y_RNA.462-201ENST00000384268 102 ntBASIC-1.4□□□□□ -2.63
CCDC42Q96M95 SNORA20-201ENST00000384662 132 ntBASIC-1.4□□□□□ -2.63
CCDC42Q96M95 RNU6-1248P-201ENST00000391096 64 ntBASIC-1.4□□□□□ -2.63
CCDC42Q96M95 RNU6-383P-201ENST00000410864 94 ntBASIC-1.4□□□□□ -2.63
CCDC42Q96M95 AC021146.6-201ENST00000514659 117 ntBASIC-1.4□□□□□ -2.63
CCDC42Q96M95 RNU7-4P-201ENST00000516961 62 ntBASIC-1.4□□□□□ -2.63
CCDC42Q96M95 AP003733.2-201ENST00000529409 171 ntBASIC-1.4□□□□□ -2.63
CCDC42Q96M95 MIR548H5-201ENST00000580314 60 ntBASIC-1.4□□□□□ -2.63
CCDC42Q96M95 AC135050.6-201ENST00000610813 528 ntTSL 3 BASIC-1.4□□□□□ -2.63
CCDC42Q96M95 PISRT1.1-201ENST00000616930 107 ntBASIC-1.4□□□□□ -2.63
CCDC42Q96M95 U6.92-201ENST00000636464 89 ntBASIC-1.4□□□□□ -2.63
CCDC42Q96M95 Y_RNA.27-201ENST00000362540 103 ntBASIC-1.41□□□□□ -2.64
CCDC42Q96M95 SNORA22.1-201ENST00000362701 134 ntBASIC-1.41□□□□□ -2.64
CCDC42Q96M95 RNU6-1205P-201ENST00000363625 106 ntBASIC-1.41□□□□□ -2.64
CCDC42Q96M95 RNU6-1336P-201ENST00000383886 109 ntBASIC-1.41□□□□□ -2.64
CCDC42Q96M95 MIR548K-201ENST00000408406 116 ntBASIC-1.41□□□□□ -2.64
CCDC42Q96M95 MTND2P9-201ENST00000422293 931 ntBASIC-1.41□□□□□ -2.64
CCDC42Q96M95 RPS3AP52-201ENST00000435639 297 ntBASIC-1.41□□□□□ -2.64
CCDC42Q96M95 U6.109-201ENST00000636749 87 ntBASIC-1.41□□□□□ -2.64
CCDC42Q96M95 MIR181B2-201ENST00000385004 89 ntBASIC-1.42□□□□□ -2.64
CCDC42Q96M95 RNU7-80P-201ENST00000459562 61 ntBASIC-1.42□□□□□ -2.64
CCDC42Q96M95 AC013417.1-201ENST00000549896 271 ntTSL 5 BASIC-1.42□□□□□ -2.64
CCDC42Q96M95 Y_RNA.68-201ENST00000362881 102 ntBASIC-1.43□□□□□ -2.64
CCDC42Q96M95 Y_RNA.221-201ENST00000364248 96 ntBASIC-1.43□□□□□ -2.64
CCDC42Q96M95 Y_RNA.454-201ENST00000384224 113 ntBASIC-1.43□□□□□ -2.64
CCDC42Q96M95 Y_RNA.482-201ENST00000384377 111 ntBASIC-1.43□□□□□ -2.64
CCDC42Q96M95 MIR1265-201ENST00000408444 86 ntBASIC-1.43□□□□□ -2.64
CCDC42Q96M95 DMD-AS3-201ENST00000439592 293 ntTSL 3 BASIC-1.43□□□□□ -2.64
CCDC42Q96M95 RPS29P25-201ENST00000481709 171 ntBASIC-1.43□□□□□ -2.64
CCDC42Q96M95 AC090582.1-201ENST00000636321 199 ntBASIC-1.43□□□□□ -2.64
CCDC42Q96M95 Y_RNA.66-201ENST00000362862 102 ntBASIC-1.44□□□□□ -2.64
CCDC42Q96M95 RNU6-1244P-201ENST00000363614 108 ntBASIC-1.44□□□□□ -2.64
CCDC42Q96M95 RNU6-449P-201ENST00000383914 107 ntBASIC-1.44□□□□□ -2.64
CCDC42Q96M95 MIR204-201ENST00000385200 110 ntBASIC-1.44□□□□□ -2.64
CCDC42Q96M95 MIR196A1-201ENST00000388006 70 ntBASIC-1.44□□□□□ -2.64
CCDC42Q96M95 RNU2-66P-201ENST00000410650 161 ntBASIC-1.44□□□□□ -2.64
CCDC42Q96M95 LINC01755-201ENST00000455010 453 ntTSL 2 BASIC-1.44□□□□□ -2.64
CCDC42Q96M95 RNU7-74P-201ENST00000459104 62 ntBASIC-1.44□□□□□ -2.64
CCDC42Q96M95 RNU6-138P-201ENST00000515952 107 ntBASIC-1.44□□□□□ -2.64
CCDC42Q96M95 RNU6-911P-201ENST00000516523 104 ntBASIC-1.44□□□□□ -2.64
CCDC42Q96M95 RNU7-110P-201ENST00000516891 62 ntBASIC-1.44□□□□□ -2.64
CCDC42Q96M95 RNU7-10P-201ENST00000607194 63 ntBASIC-1.44□□□□□ -2.64
CCDC42Q96M95 uc_338.10-201ENST00000621872 182 ntBASIC-1.44□□□□□ -2.64
CCDC42Q96M95 AC091932.4-201ENST00000623386 200 ntBASIC-1.44□□□□□ -2.64
CCDC42Q96M95 RNU6-35P-201ENST00000384530 107 ntBASIC-1.45□□□□□ -2.64
CCDC42Q96M95 AL603914.1-201ENST00000401964 204 ntBASIC-1.45□□□□□ -2.64
CCDC42Q96M95 AC008440.2-201ENST00000413496 423 ntTSL 5 BASIC-1.45□□□□□ -2.64
CCDC42Q96M95 RNU7-169P-201ENST00000459456 61 ntBASIC-1.45□□□□□ -2.64
CCDC42Q96M95 SCARNA20.2-201ENST00000516052 116 ntBASIC-1.45□□□□□ -2.64
CCDC42Q96M95 RNU7-79P-201ENST00000516082 62 ntBASIC-1.45□□□□□ -2.64
CCDC42Q96M95 AC107973.1-201ENST00000530249 576 ntTSL 4 BASIC-1.45□□□□□ -2.64
Retrieved 100 of 98,524 protein–RNA pairs in 169.3 ms