Protein–RNA interactions for Protein: P78367

NKX3-2, Homeobox protein Nkx-3.2, humanhuman

Predictions only

Length 333 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-2P78367 PYGO1-201ENST00000302000 8488 ntTSL 1 (best) BASIC2.14□□□□□ -2.07
NKX3-2P78367 WWP1P1-201ENST00000466609 2769 ntBASIC2.14□□□□□ -2.07
NKX3-2P78367 KPNA5-202ENST00000368564 11311 ntAPPRIS P1 TSL 1 (best) BASIC2.13□□□□□ -2.07
NKX3-2P78367 AP003174.1-201ENST00000306533 376 ntTSL 2 BASIC2.13□□□□□ -2.07
NKX3-2P78367 Y_RNA.140-201ENST00000363474 103 ntBASIC2.13□□□□□ -2.07
NKX3-2P78367 AL512326.2-201ENST00000426359 151 ntBASIC2.13□□□□□ -2.07
NKX3-2P78367 AC012668.1-201ENST00000457625 228 ntTSL 3 BASIC2.13□□□□□ -2.07
NKX3-2P78367 RNA5SP233-201ENST00000459153 113 ntBASIC2.13□□□□□ -2.07
NKX3-2P78367 LINC02514-201ENST00000509058 498 ntTSL 3 BASIC2.13□□□□□ -2.07
NKX3-2P78367 SNORA31.17-201ENST00000516953 127 ntBASIC2.13□□□□□ -2.07
NKX3-2P78367 MIR548AR-201ENST00000582191 57 ntBASIC2.13□□□□□ -2.07
NKX3-2P78367 KTN1-207ENST00000438792 4449 ntAPPRIS ALT2 TSL 5 BASIC2.12□□□□□ -2.07
NKX3-2P78367 Y_RNA.49-201ENST00000362714 112 ntBASIC2.12□□□□□ -2.07
NKX3-2P78367 RNU6-457P-201ENST00000363999 107 ntBASIC2.12□□□□□ -2.07
NKX3-2P78367 U8.6-201ENST00000364939 135 ntBASIC2.12□□□□□ -2.07
NKX3-2P78367 Y_RNA.323-201ENST00000365157 109 ntBASIC2.12□□□□□ -2.07
NKX3-2P78367 Y_RNA.328-201ENST00000365208 113 ntBASIC2.12□□□□□ -2.07
NKX3-2P78367 RNU6-756P-201ENST00000383997 107 ntBASIC2.12□□□□□ -2.07
NKX3-2P78367 MIR548D2-201ENST00000384955 97 ntBASIC2.12□□□□□ -2.07
NKX3-2P78367 MIR9-3-201ENST00000385084 90 ntBASIC2.12□□□□□ -2.07
NKX3-2P78367 RNA5SP247-201ENST00000411181 105 ntBASIC2.12□□□□□ -2.07
NKX3-2P78367 RNU6-958P-201ENST00000516995 106 ntBASIC2.12□□□□□ -2.07
NKX3-2P78367 RNU6-94P-201ENST00000607728 107 ntBASIC2.12□□□□□ -2.07
NKX3-2P78367 HOTAIRM1_4.1-201ENST00000617934 102 ntBASIC2.12□□□□□ -2.07
NKX3-2P78367 U1.36-201ENST00000620684 176 ntBASIC2.12□□□□□ -2.07
NKX3-2P78367 AC106754.2-201ENST00000623006 233 ntBASIC2.12□□□□□ -2.07
NKX3-2P78367 HFM1-201ENST00000370425 4931 ntAPPRIS P1 TSL 1 (best) BASIC2.12□□□□□ -2.07
NKX3-2P78367 USP53-202ENST00000450251 6072 ntAPPRIS P1 TSL 5 BASIC2.12□□□□□ -2.07
NKX3-2P78367 ZDBF2-202ENST00000611847 9890 ntTSL 5 BASIC2.12□□□□□ -2.07
NKX3-2P78367 PTPRQ-208ENST00000614701 8289 ntAPPRIS P1 TSL 5 BASIC2.12□□□□□ -2.07
NKX3-2P78367 TDRD15-202ENST00000622654 5805 ntAPPRIS P1 BASIC2.11□□□□□ -2.07
NKX3-2P78367 MIRLET7G-201ENST00000362280 84 ntBASIC2.11□□□□□ -2.07
NKX3-2P78367 RNU6-766P-201ENST00000362478 107 ntBASIC2.11□□□□□ -2.07
NKX3-2P78367 SNORA1.2-201ENST00000365189 134 ntBASIC2.11□□□□□ -2.07
NKX3-2P78367 SNORA51.5-201ENST00000384126 131 ntBASIC2.11□□□□□ -2.07
NKX3-2P78367 MIR1302-5-201ENST00000408164 150 ntBASIC2.11□□□□□ -2.07
NKX3-2P78367 POLR2J4-204ENST00000418424 324 ntBASIC2.11□□□□□ -2.07
NKX3-2P78367 AL445685.2-201ENST00000422551 342 ntBASIC2.11□□□□□ -2.07
NKX3-2P78367 SNORD123-201ENST00000459473 70 ntBASIC2.11□□□□□ -2.07
NKX3-2P78367 AC107297.1-201ENST00000459991 176 ntBASIC2.11□□□□□ -2.07
NKX3-2P78367 RNU2-13P-201ENST00000515909 113 ntBASIC2.11□□□□□ -2.07
NKX3-2P78367 Y_RNA.677-201ENST00000516401 85 ntBASIC2.11□□□□□ -2.07
NKX3-2P78367 RNU7-6P-201ENST00000516845 62 ntBASIC2.11□□□□□ -2.07
NKX3-2P78367 RNU6-1258P-201ENST00000516911 111 ntBASIC2.11□□□□□ -2.07
NKX3-2P78367 RNU6-250P-201ENST00000516958 103 ntBASIC2.11□□□□□ -2.07
NKX3-2P78367 RNU6-537P-201ENST00000517277 103 ntBASIC2.11□□□□□ -2.07
NKX3-2P78367 AC068339.1-201ENST00000526965 141 ntBASIC2.11□□□□□ -2.07
NKX3-2P78367 AC004812.1-201ENST00000540773 146 ntBASIC2.11□□□□□ -2.07
NKX3-2P78367 MIR3163-201ENST00000581592 73 ntBASIC2.11□□□□□ -2.07
NKX3-2P78367 AP001109.1-201ENST00000587114 279 ntTSL 3 BASIC2.11□□□□□ -2.07
NKX3-2P78367 snoU13.31-201ENST00000607291 104 ntBASIC2.11□□□□□ -2.07
NKX3-2P78367 SENP7-207ENST00000394095 4945 ntAPPRIS P3 TSL 1 (best) BASIC2.1□□□□□ -2.07
NKX3-2P78367 MIR424-201ENST00000362227 98 ntBASIC2.1□□□□□ -2.07
NKX3-2P78367 SNORA51.10-201ENST00000384418 136 ntBASIC2.1□□□□□ -2.07
NKX3-2P78367 RNU6-1190P-201ENST00000410811 104 ntBASIC2.1□□□□□ -2.07
NKX3-2P78367 RNU7-67P-201ENST00000459003 62 ntBASIC2.1□□□□□ -2.07
NKX3-2P78367 RNU6-1053P-201ENST00000515930 101 ntBASIC2.1□□□□□ -2.07
NKX3-2P78367 MIR4529-201ENST00000578110 78 ntBASIC2.1□□□□□ -2.07
NKX3-2P78367 MIR5009-201ENST00000578736 100 ntBASIC2.1□□□□□ -2.07
NKX3-2P78367 AL513534.2-201ENST00000603836 250 ntBASIC2.1□□□□□ -2.07
NKX3-2P78367 Y_RNA.171-201ENST00000363760 102 ntBASIC2.09□□□□□ -2.07
NKX3-2P78367 RNA5SP190-201ENST00000365222 118 ntBASIC2.09□□□□□ -2.07
NKX3-2P78367 RNU6-203P-201ENST00000384038 104 ntBASIC2.09□□□□□ -2.07
NKX3-2P78367 AL022718.1-201ENST00000412004 84 ntBASIC2.09□□□□□ -2.07
NKX3-2P78367 AL356379.1-201ENST00000414105 126 ntBASIC2.09□□□□□ -2.07
NKX3-2P78367 FAM106DP-201ENST00000586416 501 ntBASIC2.09□□□□□ -2.07
NKX3-2P78367 SNRPGP19-201ENST00000603826 189 ntBASIC2.09□□□□□ -2.07
NKX3-2P78367 C16orf97-206ENST00000622950 415 ntTSL 2 BASIC2.09□□□□□ -2.07
NKX3-2P78367 AC095038.3-201ENST00000634439 195 ntBASIC2.09□□□□□ -2.07
NKX3-2P78367 MIR4679-1-201ENST00000637619 75 ntBASIC2.09□□□□□ -2.07
NKX3-2P78367 UHRF1BP1L-203ENST00000545232 4088 ntTSL 1 (best) BASIC2.09□□□□□ -2.08
NKX3-2P78367 PCDH11Y-203ENST00000362095 4220 ntAPPRIS ALT2 TSL 1 (best) BASIC2.09□□□□□ -2.08
NKX3-2P78367 SNORA16B-201ENST00000364674 135 ntBASIC2.08□□□□□ -2.08
NKX3-2P78367 Y_RNA.348-201ENST00000365403 103 ntBASIC2.08□□□□□ -2.08
NKX3-2P78367 RNA5SP37-201ENST00000365420 130 ntBASIC2.08□□□□□ -2.08
NKX3-2P78367 RNU4-52P-201ENST00000384209 138 ntBASIC2.08□□□□□ -2.08
NKX3-2P78367 RNU6-905P-201ENST00000384434 107 ntBASIC2.08□□□□□ -2.08
NKX3-2P78367 Y_RNA.531-201ENST00000384589 121 ntBASIC2.08□□□□□ -2.08
NKX3-2P78367 MIR676-201ENST00000390702 67 ntBASIC2.08□□□□□ -2.08
NKX3-2P78367 RNU6-913P-201ENST00000390913 95 ntBASIC2.08□□□□□ -2.08
NKX3-2P78367 SNORA67.5-201ENST00000391036 107 ntBASIC2.08□□□□□ -2.08
NKX3-2P78367 SNORA19.1-201ENST00000410656 129 ntBASIC2.08□□□□□ -2.08
NKX3-2P78367 AC003989.2-201ENST00000440224 169 ntBASIC2.08□□□□□ -2.08
NKX3-2P78367 RPS29P29-201ENST00000456396 171 ntBASIC2.08□□□□□ -2.08
NKX3-2P78367 MIR5582-201ENST00000579697 68 ntBASIC2.08□□□□□ -2.08
NKX3-2P78367 AC243994.1-201ENST00000618627 109 ntBASIC2.08□□□□□ -2.08
NKX3-2P78367 AC087741.2-201ENST00000619415 172 ntBASIC2.08□□□□□ -2.08
NKX3-2P78367 LRRCC1-202ENST00000414626 4493 ntAPPRIS ALT2 TSL 1 (best) BASIC2.08□□□□□ -2.08
NKX3-2P78367 OR5M1-202ENST00000641076 4302 ntAPPRIS P1 BASIC2.08□□□□□ -2.08
NKX3-2P78367 FSIP2-202ENST00000424728 20788 ntAPPRIS P2 TSL 5 BASIC2.07□□□□□ -2.08
NKX3-2P78367 KIF20B-202ENST00000371728 6419 ntAPPRIS ALT2 TSL 1 (best) BASIC2.07□□□□□ -2.08
NKX3-2P78367 SNORA24-201ENST00000384096 131 ntBASIC2.07□□□□□ -2.08
NKX3-2P78367 RNU6-1319P-201ENST00000390855 104 ntBASIC2.07□□□□□ -2.08
NKX3-2P78367 RNU6-747P-201ENST00000390928 104 ntBASIC2.07□□□□□ -2.08
NKX3-2P78367 RNU6-241P-201ENST00000391148 104 ntBASIC2.07□□□□□ -2.08
NKX3-2P78367 SNORA26.6-201ENST00000391256 115 ntBASIC2.07□□□□□ -2.08
NKX3-2P78367 RNY4P30-201ENST00000410216 95 ntBASIC2.07□□□□□ -2.08
NKX3-2P78367 RNU6-177P-201ENST00000411257 104 ntBASIC2.07□□□□□ -2.08
NKX3-2P78367 AC025033.1-201ENST00000463883 194 ntBASIC2.07□□□□□ -2.08
NKX3-2P78367 AC055731.1-201ENST00000474387 401 ntBASIC2.07□□□□□ -2.08
Retrieved 100 of 98,524 protein–RNA pairs in 130.1 ms